Wall clock time and date at job start Tue Mar 31 2020 18:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99940 * 2 1 4 4 H 1.08996 * 109.46641 * 30.00094 * 3 2 1 5 5 C 1.50698 * 109.46886 * 149.99871 * 3 2 1 6 6 O 1.21283 * 120.00472 * 5.00421 * 5 3 2 7 7 N 1.34777 * 119.99538 * 184.99758 * 5 3 2 8 8 C 1.46499 * 119.99665 * 179.72653 * 7 5 3 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 N 1.46499 * 109.47198 * 179.97438 * 9 8 7 11 11 C 1.34777 * 120.00065 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99650 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00075 * 180.02562 * 11 10 9 14 14 S 1.81004 * 109.46908 * 179.97438 * 13 11 10 15 15 C 1.76202 * 99.99819 * 180.02562 * 14 13 11 16 16 H 1.08007 * 119.99752 * 359.97438 * 15 14 13 17 17 C 1.38793 * 119.99846 * 180.02562 * 15 14 13 18 18 N 1.31624 * 120.00284 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99825 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46892 * 60.00283 * 19 17 15 21 21 H 1.48505 * 109.47235 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47504 * 299.99978 * 19 17 15 23 23 C 1.52995 * 109.46923 * 270.00252 * 3 2 1 24 24 C 1.53790 * 113.61166 * 159.13766 * 23 3 2 25 25 C 1.53952 * 87.01537 * 220.04341 * 24 23 3 26 26 C 1.53777 * 87.11523 * 25.36320 * 25 24 23 27 27 H 1.09002 * 109.47143 * 299.99533 * 1 2 3 28 28 H 1.09000 * 109.47285 * 59.99783 * 1 2 3 29 29 H 1.09007 * 109.47193 * 180.02562 * 1 2 3 30 30 H 0.97001 * 120.00485 * 0.02562 * 7 5 3 31 31 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 32 32 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 33 33 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 34 34 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 35 35 H 0.97000 * 120.00386 * 359.97438 * 10 9 8 36 36 H 1.08994 * 109.46850 * 299.99690 * 13 11 10 37 37 H 1.08998 * 109.47115 * 59.99614 * 13 11 10 38 38 H 0.97003 * 120.00379 * 179.97438 * 18 17 15 39 39 H 1.09004 * 112.85048 * 290.32918 * 23 3 2 40 40 H 1.09000 * 113.61220 * 334.56345 * 24 23 3 41 41 H 1.09002 * 113.61086 * 105.46789 * 24 23 3 42 42 H 1.08994 * 113.54401 * 270.80686 * 25 24 23 43 43 H 1.09009 * 113.73897 * 139.94378 * 25 24 23 44 44 H 1.09001 * 113.61657 * 220.08441 * 26 25 24 45 45 H 1.09000 * 113.61858 * 89.18319 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5138 5 6 3.3386 1.2639 0.7104 6 8 3.7897 0.2045 1.0914 7 7 4.0254 2.4040 0.9224 8 6 5.3139 2.3643 1.6183 9 6 5.8755 3.7829 1.7330 10 7 7.1637 3.7433 2.4295 11 6 7.8476 4.8841 2.6470 12 8 7.3962 5.9436 2.2665 13 6 9.1731 4.8433 3.3629 14 16 9.8373 6.5216 3.4988 15 6 11.3436 6.1865 4.3494 16 1 11.5974 5.1718 4.6188 17 6 12.2033 7.2266 4.6742 18 7 11.8937 8.4631 4.3463 19 14 13.7999 6.8714 5.5766 20 1 14.6368 5.9558 4.7601 21 1 14.5338 8.1424 5.8030 22 1 13.4986 6.2337 6.8834 23 6 2.2176 1.7714 -1.4425 24 6 2.3476 3.2972 -1.5843 25 6 1.4919 3.1709 -2.8579 26 6 0.9120 1.8843 -2.2472 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.6645 3.2514 0.6180 31 1 5.1755 1.9466 2.6156 32 1 6.0109 1.7419 1.0572 33 1 6.0138 4.2006 0.7358 34 1 5.1785 4.4054 2.2943 35 1 7.5242 2.8961 2.7348 36 1 9.0347 4.4252 4.3599 37 1 9.8702 4.2213 2.8016 38 1 12.4944 9.1901 4.5736 39 1 3.0016 1.2166 -1.9579 40 1 1.8596 3.8532 -0.7838 41 1 3.3672 3.6327 -1.7737 42 1 2.0779 3.0000 -3.7609 43 1 0.7579 3.9683 -2.9743 44 1 0.7743 1.0809 -2.9709 45 1 0.0309 2.0533 -1.6282 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686445845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:40 Heat of formation + Delta-G solvation = -100.391864 kcal Electronic energy + Delta-G solvation = -25049.289590 eV Core-core repulsion = 21193.975357 eV Total energy + Delta-G solvation = -3855.314233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -40.87418 -39.35856 -38.86496 -37.41353 -35.90991 -33.99319 -32.44344 -30.99329 -29.78808 -27.85914 -26.90285 -26.09496 -25.49603 -24.22272 -22.75186 -21.09249 -20.34497 -20.05735 -18.15383 -17.78975 -17.26525 -16.74254 -16.44100 -16.06439 -15.98582 -15.71410 -15.33110 -14.94355 -14.81426 -14.74828 -14.29729 -13.91886 -13.87195 -13.58799 -13.20319 -13.07794 -12.62636 -12.57934 -12.51870 -12.35456 -12.06620 -11.99600 -11.68223 -11.45316 -11.06156 -11.04518 -11.04270 -10.88190 -10.78425 -10.35859 -9.84808 -9.73213 -9.50089 -9.48518 -9.08766 -9.01416 -8.27057 -6.52327 -6.22992 -3.94022 2.23023 2.31458 3.01443 3.03188 3.23110 3.26704 3.29443 3.44500 3.73069 3.93792 4.08222 4.15343 4.19196 4.31552 4.36850 4.40927 4.58091 4.73323 4.80182 4.88461 4.91655 5.09848 5.09940 5.12262 5.17141 5.17797 5.26891 5.29999 5.41172 5.43948 5.54952 5.60232 5.60948 5.72275 5.86123 5.88172 5.96201 6.11386 6.46651 6.53886 7.06612 7.57468 7.59328 7.83758 8.33722 8.51314 9.22343 10.84360 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.029936 B = 0.001711 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.097592 B =16362.268396 C =17058.662933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.356 6.356 3 C 0.084 3.916 4 H 0.087 0.913 5 C 0.517 3.483 6 O -0.517 6.517 7 N -0.724 5.724 8 C 0.109 3.891 9 C 0.111 3.889 10 N -0.737 5.737 11 C 0.535 3.465 12 O -0.516 6.516 13 C -0.154 4.154 14 S -0.060 6.060 15 C -0.537 4.537 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.130 4.130 24 C -0.144 4.144 25 C -0.138 4.138 26 C -0.135 4.135 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.403 0.597 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.401 0.599 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.269 0.731 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.691 -14.542 -12.050 31.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.273 6.273 3 C 0.022 3.978 4 H 0.105 0.895 5 C 0.301 3.699 6 O -0.391 6.391 7 N -0.379 5.379 8 C -0.015 4.015 9 C -0.014 4.014 10 N -0.392 5.392 11 C 0.321 3.679 12 O -0.390 6.390 13 C -0.304 4.304 14 S 0.167 5.833 15 C -0.685 4.685 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.149 4.149 24 C -0.181 4.181 25 C -0.175 4.175 26 C -0.172 4.172 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.238 0.762 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.236 0.764 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.954 -13.531 -12.403 30.978 hybrid contribution 1.345 -1.251 1.046 2.114 sum -23.609 -14.782 -11.356 30.081 Atomic orbital electron populations 1.23085 0.80602 1.03463 1.00444 1.88038 1.19703 1.24700 1.94838 1.21954 0.93224 0.87077 0.95503 0.89514 1.20364 0.86208 0.83868 0.79420 1.90746 1.69065 1.29661 1.49610 1.45746 1.21904 1.09815 1.60448 1.21476 0.84738 0.97020 0.98255 1.21313 0.86112 0.95445 0.98502 1.45808 1.21537 1.10358 1.61537 1.20327 0.85850 0.83069 0.78678 1.90707 1.68999 1.29529 1.49757 1.23533 0.95878 1.08582 1.02439 1.85381 1.22975 0.98992 1.75969 1.22829 1.06048 0.96340 1.43267 0.90917 1.24987 0.98485 0.94423 0.95647 1.70002 1.37059 0.98998 1.44241 0.86221 0.81661 0.77777 0.79820 1.19926 1.20804 1.19925 1.23078 1.00271 0.97118 0.94418 1.23085 1.01528 0.94537 0.98952 1.22805 0.99413 0.97897 0.97435 1.22992 0.96414 0.98551 0.99286 0.93891 0.92961 0.89140 0.76207 0.90528 0.90499 0.90895 0.90941 0.76443 0.89049 0.89043 0.92111 0.87929 0.89587 0.90393 0.89836 0.90972 0.90864 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.58 101.05 1.07 1.18 16 2 O -0.36 -3.40 9.85 -55.09 -0.54 -3.94 16 3 C 0.08 0.63 2.44 -27.89 -0.07 0.57 16 4 H 0.09 0.46 7.62 -51.93 -0.40 0.06 16 5 C 0.52 5.27 7.18 -10.99 -0.08 5.19 16 6 O -0.52 -7.66 16.51 -14.30 -0.24 -7.89 16 7 N -0.72 -5.64 5.45 -60.29 -0.33 -5.96 16 8 C 0.11 0.94 5.79 -4.04 -0.02 0.92 16 9 C 0.11 1.12 5.79 -4.04 -0.02 1.10 16 10 N -0.74 -9.10 5.56 -60.29 -0.33 -9.43 16 11 C 0.53 9.53 7.85 -10.98 -0.09 9.45 16 12 O -0.52 -11.23 15.86 5.55 0.09 -11.14 16 13 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 14 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 15 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 16 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 17 C 0.07 2.10 5.49 -17.44 -0.10 2.00 16 18 N -0.87 -25.98 13.22 55.49 0.73 -25.24 16 19 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 C -0.13 -0.77 3.32 -89.81 -0.30 -1.07 16 24 C -0.14 -0.63 6.19 -25.82 -0.16 -0.79 16 25 C -0.14 -0.59 8.09 -25.83 -0.21 -0.80 16 26 C -0.14 -0.61 6.14 -25.92 -0.16 -0.77 16 27 H 0.04 0.20 8.09 -51.93 -0.42 -0.22 16 28 H 0.05 0.21 5.04 -51.93 -0.26 -0.06 16 29 H 0.09 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.40 2.18 7.05 -40.82 -0.29 1.90 16 31 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.40 3.86 8.47 -40.82 -0.35 3.52 16 36 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 37 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.28 7.98 -51.93 -0.41 -0.14 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.30 6.49 -51.93 -0.34 -0.04 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -37.55 386.95 -8.72 -46.27 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -7.08 Total: -0.26 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 0.38 Total: -0.68 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.07 Total: -40.64 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.69 Total: -22.97 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.55 -8.72 -46.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686445845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.124 kcal (2) G-P(sol) polarization free energy of solvation -37.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds