Wall clock time and date at job start Tue Mar 31 2020 18:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99591 * 2 1 4 4 H 1.09003 * 109.47460 * 30.00037 * 3 2 1 5 5 C 1.50702 * 109.46978 * 269.99796 * 3 2 1 6 6 O 1.21283 * 120.00262 * 355.00493 * 5 3 2 7 7 N 1.34777 * 119.99928 * 174.72398 * 5 3 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 3 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 N 1.46499 * 109.47555 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00199 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99750 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99772 * 180.02562 * 11 10 9 14 14 S 1.81000 * 109.46868 * 180.02562 * 13 11 10 15 15 C 1.76199 * 100.00170 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99534 * 359.97438 * 15 14 13 17 17 C 1.38799 * 120.00549 * 180.02562 * 15 14 13 18 18 N 1.31632 * 119.99352 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00392 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46996 * 89.99676 * 19 17 15 21 21 H 1.48495 * 109.46895 * 209.99933 * 19 17 15 22 22 H 1.48496 * 109.46857 * 329.99742 * 19 17 15 23 23 C 1.53003 * 109.47189 * 150.00312 * 3 2 1 24 24 C 1.53782 * 113.61490 * 37.49382 * 23 3 2 25 25 C 1.53782 * 87.08025 * 220.02487 * 24 23 3 26 26 C 1.53780 * 87.08352 * 25.43099 * 25 24 23 27 27 H 1.09001 * 109.46977 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47179 * 299.99744 * 1 2 3 29 29 H 1.08997 * 109.47018 * 60.00408 * 1 2 3 30 30 H 0.97000 * 120.00317 * 0.28382 * 7 5 3 31 31 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 32 32 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 33 33 H 1.08998 * 109.47382 * 300.00439 * 9 8 7 34 34 H 1.09011 * 109.47062 * 60.00275 * 9 8 7 35 35 H 0.97000 * 119.99478 * 0.02562 * 10 9 8 36 36 H 1.09006 * 109.47054 * 300.00143 * 13 11 10 37 37 H 1.08997 * 109.47040 * 60.00297 * 13 11 10 38 38 H 0.97004 * 119.99696 * 180.02562 * 18 17 15 39 39 H 1.08997 * 112.85111 * 168.80265 * 23 3 2 40 40 H 1.09002 * 113.61351 * 334.57110 * 24 23 3 41 41 H 1.08993 * 113.61360 * 105.47064 * 24 23 3 42 42 H 1.09002 * 113.61060 * 270.88563 * 25 24 23 43 43 H 1.09003 * 113.69191 * 139.99626 * 25 24 23 44 44 H 1.08998 * 113.61343 * 220.02111 * 26 25 24 45 45 H 1.09004 * 113.61425 * 89.11931 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0106 -2.3414 7 7 2.6534 3.0143 -1.6688 8 6 2.8463 3.4624 -3.0502 9 6 3.3469 4.9082 -3.0522 10 7 3.5392 5.3565 -4.4336 11 6 3.9780 6.6065 -4.6816 12 8 4.2141 7.3600 -3.7610 13 6 4.1752 7.0678 -6.1026 14 16 4.7675 8.7781 -6.1050 15 6 4.9071 9.0512 -7.8400 16 1 4.6525 8.2629 -8.5329 17 6 5.3452 10.2791 -8.3164 18 7 5.6559 11.2398 -7.4718 19 14 5.4938 10.5684 -10.1559 20 1 4.2108 11.1033 -10.6780 21 1 6.5806 11.5460 -10.4169 22 1 5.8083 9.2857 -10.8348 23 6 3.3589 1.2634 0.7212 24 6 4.1599 -0.0221 0.4551 25 6 4.5529 0.0088 1.9416 26 6 3.2602 0.8051 2.1858 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.8418 3.6172 -0.9326 31 1 3.5807 2.8233 -3.5403 32 1 1.8991 3.4047 -3.5864 33 1 2.6128 5.5476 -2.5620 34 1 4.2943 4.9655 -2.5161 35 1 3.3500 4.7539 -5.1698 36 1 4.9093 6.4287 -6.5935 37 1 3.2276 7.0103 -6.6380 38 1 5.9618 12.0980 -7.8047 39 1 3.9390 2.1765 0.5876 40 1 3.5383 -0.8759 0.1855 41 1 5.0018 0.1204 -0.2222 42 1 5.4607 0.5781 2.1414 43 1 4.5566 -0.9735 2.4141 44 1 3.3759 1.6153 2.9056 45 1 2.3926 0.1774 2.3894 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686445846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:48 Heat of formation + Delta-G solvation = -103.522673 kcal Electronic energy + Delta-G solvation = -24979.230450 eV Core-core repulsion = 21123.780455 eV Total energy + Delta-G solvation = -3855.449995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.81953 -39.34287 -38.77831 -37.33262 -35.90245 -34.01933 -32.44884 -31.00304 -29.78243 -27.90166 -26.64174 -25.95812 -25.50250 -24.28395 -22.76913 -21.10320 -20.34295 -19.77920 -18.19348 -17.75584 -17.21602 -16.78861 -16.37499 -16.05289 -15.95139 -15.56146 -15.37955 -14.94008 -14.86212 -14.81979 -14.12252 -14.02575 -13.87586 -13.50419 -13.21055 -12.85835 -12.67039 -12.58996 -12.38957 -12.31793 -12.07983 -11.87829 -11.69923 -11.07939 -11.06386 -11.04437 -11.00818 -10.78273 -10.77914 -10.61725 -9.84648 -9.69074 -9.50346 -9.47925 -9.10044 -9.02455 -8.27324 -6.53021 -6.23865 -3.94765 2.20717 2.44441 3.00565 3.06066 3.21322 3.25453 3.28671 3.35845 3.72163 4.00738 4.18352 4.21910 4.22657 4.34934 4.45123 4.51039 4.69455 4.76054 4.78857 4.94305 5.04272 5.09013 5.11529 5.16123 5.20061 5.29241 5.36595 5.47261 5.53158 5.54169 5.59165 5.65924 5.71276 5.79051 5.85198 5.95824 6.10448 6.12389 6.45767 6.52776 7.05525 7.56805 7.58634 7.82035 8.33240 8.50440 9.21645 10.83563 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.029474 B = 0.001665 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.769059 B =16817.512089 C =17248.301856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.084 3.916 4 H 0.089 0.911 5 C 0.493 3.507 6 O -0.522 6.522 7 N -0.726 5.726 8 C 0.109 3.891 9 C 0.111 3.889 10 N -0.737 5.737 11 C 0.534 3.466 12 O -0.516 6.516 13 C -0.154 4.154 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.113 4.113 24 C -0.128 4.128 25 C -0.143 4.143 26 C -0.129 4.129 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.403 0.597 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.401 0.599 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.269 0.731 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.235 -23.251 18.866 31.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.269 6.269 3 C 0.022 3.978 4 H 0.107 0.893 5 C 0.278 3.722 6 O -0.397 6.397 7 N -0.381 5.381 8 C -0.015 4.015 9 C -0.014 4.014 10 N -0.393 5.393 11 C 0.321 3.679 12 O -0.390 6.390 13 C -0.304 4.304 14 S 0.167 5.833 15 C -0.684 4.684 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.746 3.254 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.131 4.131 24 C -0.165 4.165 25 C -0.180 4.180 26 C -0.166 4.166 27 H 0.109 0.891 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.238 0.762 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.235 0.765 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.845 -22.546 19.762 30.991 hybrid contribution -0.431 -0.342 -2.356 2.420 sum -8.276 -22.889 17.406 29.922 Atomic orbital electron populations 1.22887 0.80555 1.03353 1.00078 1.87977 1.19976 1.24631 1.94291 1.21863 0.97170 0.86962 0.91772 0.89329 1.21383 0.76996 0.81390 0.92388 1.90731 1.49337 1.53541 1.46069 1.45851 1.68854 1.14613 1.08784 1.21456 1.02105 0.94514 0.83463 1.21316 1.01816 0.93146 0.85083 1.45813 1.70675 1.15212 1.07565 1.20329 0.75614 0.80529 0.91462 1.90707 1.48726 1.53378 1.46165 1.23533 1.05233 1.06866 0.94794 1.85386 1.85317 1.02686 1.09959 1.22868 1.52109 1.01948 0.91495 0.90871 1.24997 0.94570 0.94963 0.99060 1.70019 1.41839 1.04013 1.34413 0.86156 0.78021 0.78238 0.83026 1.20261 1.20737 1.19680 1.22760 0.93449 1.00302 0.96625 1.22839 0.99367 0.97796 0.96533 1.22799 0.97570 1.00735 0.96898 1.22899 0.98960 1.00072 0.94699 0.89121 0.93857 0.93650 0.76247 0.90615 0.90700 0.90960 0.90909 0.76472 0.89046 0.89059 0.92166 0.87610 0.88577 0.91637 0.90186 0.91275 0.91258 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.81 101.05 1.09 1.27 16 2 O -0.35 -3.06 8.00 -55.09 -0.44 -3.50 16 3 C 0.08 0.60 2.52 -27.88 -0.07 0.53 16 4 H 0.09 0.43 7.79 -51.93 -0.40 0.03 16 5 C 0.49 4.72 7.12 -10.98 -0.08 4.64 16 6 O -0.52 -7.24 16.51 -14.30 -0.24 -7.47 16 7 N -0.73 -5.42 5.48 -60.29 -0.33 -5.75 16 8 C 0.11 0.93 5.79 -4.04 -0.02 0.90 16 9 C 0.11 1.12 5.79 -4.04 -0.02 1.10 16 10 N -0.74 -9.11 5.56 -60.29 -0.33 -9.45 16 11 C 0.53 9.55 7.85 -10.99 -0.09 9.46 16 12 O -0.52 -11.25 15.86 5.55 0.09 -11.16 16 13 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 14 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 15 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 16 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 17 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 18 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 19 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 C -0.11 -0.68 3.55 -89.80 -0.32 -1.00 16 24 C -0.13 -0.93 7.48 -25.92 -0.19 -1.13 16 25 C -0.14 -0.81 8.08 -25.92 -0.21 -1.02 16 26 C -0.13 -0.67 7.54 -25.92 -0.20 -0.86 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.19 8.08 -51.93 -0.42 -0.23 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.40 1.97 8.34 -40.82 -0.34 1.63 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.40 3.87 8.47 -40.82 -0.35 3.53 16 36 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 37 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.11 0.51 7.96 -51.93 -0.41 0.09 16 40 H 0.10 0.85 6.98 -51.93 -0.36 0.48 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.09 0.48 7.77 -51.93 -0.40 0.08 16 LS Contribution 392.97 15.07 5.92 5.92 Total: -1.00 -36.98 392.97 -8.83 -45.81 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.31 Total: 0.16 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 0.31 Total: -1.75 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.07 Total: -40.44 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.59 Total: -22.14 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.98 -8.83 -45.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686445846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.715 kcal (2) G-P(sol) polarization free energy of solvation -36.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds