Wall clock time and date at job start Tue Mar 31 2020 18:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99785 * 2 1 4 4 C 1.53001 * 109.46812 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46898 * 179.97438 * 4 3 2 6 6 O 1.21274 * 119.99964 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99508 * 179.97438 * 5 4 3 8 8 C 1.46508 * 119.99594 * 180.02562 * 7 5 4 9 9 H 1.09006 * 112.85122 * 336.19708 * 8 7 5 10 10 C 1.53779 * 113.69115 * 107.46541 * 8 7 5 11 11 C 1.53784 * 87.08045 * 139.99342 * 10 8 7 12 12 H 1.08994 * 113.61477 * 89.11454 * 11 10 8 13 13 C 1.52997 * 113.61270 * 220.02125 * 11 10 8 14 14 N 1.46498 * 109.47070 * 272.49429 * 13 11 10 15 15 C 1.34783 * 120.00214 * 179.97438 * 14 13 11 16 16 O 1.21287 * 119.99646 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00120 * 180.02562 * 15 14 13 18 18 S 1.80996 * 109.47167 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00148 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99858 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00036 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99758 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99918 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.46906 * 59.99489 * 23 21 19 25 25 H 1.48496 * 109.47030 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46681 * 299.99408 * 23 21 19 27 27 C 1.53779 * 113.61245 * 205.00346 * 8 7 5 28 28 H 1.09002 * 109.47445 * 59.99499 * 1 2 3 29 29 H 1.09000 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46833 * 299.99885 * 1 2 3 31 31 H 1.08995 * 109.47164 * 60.00336 * 3 2 1 32 32 H 1.09003 * 109.47161 * 300.00279 * 3 2 1 33 33 H 1.09009 * 109.47225 * 60.00366 * 4 3 2 34 34 H 1.09000 * 109.47259 * 300.00481 * 4 3 2 35 35 H 0.96996 * 120.00779 * 0.02562 * 7 5 4 36 36 H 1.09002 * 113.61557 * 25.44454 * 10 8 7 37 37 H 1.09004 * 113.61501 * 254.53874 * 10 8 7 38 38 H 1.08998 * 109.47573 * 32.49481 * 13 11 10 39 39 H 1.09003 * 109.47157 * 152.50001 * 13 11 10 40 40 H 0.96997 * 120.00287 * 0.02562 * 14 13 11 41 41 H 1.08998 * 109.46935 * 300.00333 * 17 15 14 42 42 H 1.09003 * 109.46788 * 60.00236 * 17 15 14 43 43 H 0.96998 * 119.99714 * 180.02562 * 22 21 19 44 44 H 1.08997 * 113.61646 * 105.38794 * 27 8 7 45 45 H 1.09000 * 113.61527 * 334.48065 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1484 2.5614 -0.0013 6 8 3.4355 3.5426 -0.0008 7 7 5.4887 2.7022 -0.0014 8 6 6.0846 4.0407 -0.0014 9 1 5.4172 4.8012 -0.4068 10 6 6.7221 4.4332 1.3418 11 6 7.8586 5.0720 0.5260 12 1 7.6761 6.1144 0.2649 13 6 9.2473 4.8426 1.1257 14 7 9.5405 5.8994 2.0969 15 6 10.7164 5.9020 2.7557 16 8 11.5319 5.0295 2.5442 17 6 11.0177 6.9888 3.7552 18 16 12.6600 6.7167 4.4656 19 6 12.7488 8.0899 5.5661 20 1 11.9227 8.7823 5.6333 21 6 13.8808 8.2823 6.3459 22 7 14.8878 7.4386 6.2636 23 14 13.9746 9.7377 7.5131 24 1 12.8688 9.6523 8.5006 25 1 15.2770 9.7174 8.2260 26 1 13.8521 11.0002 6.7408 27 6 7.5017 4.0840 -0.5971 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8465 -0.8900 33 1 3.8567 0.6439 -0.8910 34 1 3.8574 0.6435 0.8891 35 1 6.0589 1.9176 -0.0014 36 1 7.0406 3.5795 1.9401 37 1 6.1342 5.1540 1.9101 38 1 9.2722 3.8737 1.6245 39 1 9.9937 4.8617 0.3315 40 1 8.8882 6.5970 2.2664 41 1 10.9931 7.9578 3.2567 42 1 10.2711 6.9695 4.5491 43 1 15.6788 7.5729 6.8089 44 1 7.5431 4.5228 -1.5940 45 1 8.0332 3.1348 -0.5289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001757310552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:31 Heat of formation + Delta-G solvation = -112.067247 kcal Electronic energy + Delta-G solvation = -24251.784512 eV Core-core repulsion = 20395.963996 eV Total energy + Delta-G solvation = -3855.820515 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.70501 -39.46906 -38.65158 -38.05544 -34.73907 -33.53773 -32.42752 -32.15717 -29.87276 -27.51173 -26.85984 -26.12949 -25.46656 -24.41423 -22.34013 -20.94851 -20.55052 -19.74816 -17.89297 -17.80818 -16.96282 -16.80112 -16.31967 -16.22327 -15.92475 -15.49540 -15.44094 -15.22305 -15.00029 -14.80192 -14.03595 -13.97594 -13.86713 -13.40519 -13.16379 -12.89749 -12.67246 -12.55994 -12.42202 -12.36218 -11.95371 -11.84876 -11.68744 -11.53704 -11.09783 -11.04221 -11.03707 -10.76870 -10.73675 -10.28652 -10.17947 -9.82268 -9.46134 -9.39412 -9.06249 -8.87460 -8.24125 -6.50039 -6.21507 -3.92188 2.15321 2.52927 3.03715 3.10107 3.23665 3.27682 3.31259 3.43963 3.69880 4.05122 4.20576 4.21311 4.23805 4.40123 4.42644 4.51462 4.60907 4.87150 4.88003 4.92965 4.99937 5.13540 5.14283 5.17640 5.19863 5.26231 5.29067 5.30180 5.35247 5.43747 5.56727 5.62200 5.69022 5.79833 5.89657 5.95075 6.14034 6.14686 6.60814 6.62395 7.01905 7.59357 7.71068 7.74309 8.35120 8.61492 9.23721 10.85901 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.027172 B = 0.001481 C = 0.001450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.235004 B =18897.330319 C =19301.217551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.142 4.142 5 C 0.519 3.481 6 O -0.542 6.542 7 N -0.718 5.718 8 C 0.121 3.879 9 H 0.116 0.884 10 C -0.147 4.147 11 C -0.120 4.120 12 H 0.101 0.899 13 C 0.134 3.866 14 N -0.738 5.738 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.135 4.135 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.404 0.596 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.079 0.921 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.927 -11.764 -15.810 32.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.182 4.182 5 C 0.306 3.694 6 O -0.419 6.419 7 N -0.369 5.369 8 C 0.016 3.984 9 H 0.134 0.866 10 C -0.185 4.185 11 C -0.139 4.139 12 H 0.119 0.881 13 C 0.010 3.990 14 N -0.393 5.393 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.174 4.174 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.238 0.762 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -24.784 -12.747 -16.109 32.191 hybrid contribution -1.076 2.133 1.107 2.633 sum -25.860 -10.614 -15.003 31.725 Atomic orbital electron populations 1.22748 0.80420 1.02861 1.00289 1.87801 1.20218 1.27925 1.95585 1.22158 0.91815 0.84325 1.01844 1.21496 0.95672 0.95140 1.05879 1.20450 0.82488 0.91085 0.75398 1.90724 1.60977 1.40841 1.49378 1.45989 1.06559 1.09209 1.75148 1.22560 0.93460 0.85040 0.97349 0.86599 1.23580 0.96855 1.01262 0.96833 1.22608 0.94327 1.00055 0.96954 0.88070 1.21225 0.94630 0.91414 0.91748 1.45993 1.19305 1.30178 1.43798 1.20315 0.80797 0.86339 0.80850 1.90701 1.46455 1.37813 1.64378 1.23533 1.07306 0.99557 1.00054 1.85382 1.10263 1.37658 1.50087 1.22834 1.05804 1.12758 1.27092 0.90981 1.24985 0.94652 0.97109 0.96759 1.70009 1.05800 1.35526 1.38983 0.86227 0.77562 0.81542 0.80192 1.19946 1.20797 1.19933 1.23331 0.94944 1.00308 0.98807 0.93904 0.89441 0.93847 0.92311 0.92382 0.87884 0.87802 0.76159 0.89270 0.90694 0.91537 0.91445 0.76808 0.89234 0.89248 0.92129 0.90242 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.40 -3.06 10.70 -35.23 -0.38 -3.44 16 3 C 0.08 0.54 5.23 37.16 0.19 0.73 16 4 C -0.14 -0.79 6.07 -27.88 -0.17 -0.96 16 5 C 0.52 4.04 7.83 -10.98 -0.09 3.95 16 6 O -0.54 -6.35 15.58 5.56 0.09 -6.26 16 7 N -0.72 -4.19 5.36 -53.01 -0.28 -4.47 16 8 C 0.12 0.80 4.24 -67.12 -0.28 0.51 16 9 H 0.12 0.93 7.47 -51.93 -0.39 0.54 16 10 C -0.15 -1.04 7.43 -25.92 -0.19 -1.24 16 11 C -0.12 -0.84 3.76 -89.80 -0.34 -1.17 16 12 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 13 C 0.13 1.40 5.51 -4.04 -0.02 1.38 16 14 N -0.74 -9.39 5.56 -60.29 -0.33 -9.72 16 15 C 0.53 9.75 7.85 -10.98 -0.09 9.67 16 16 O -0.52 -11.67 15.86 5.55 0.09 -11.59 16 17 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 23 Si 0.92 21.38 29.55 -169.99 -5.02 16.35 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 C -0.14 -0.75 7.39 -25.92 -0.19 -0.94 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 32 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 33 H 0.10 0.42 8.14 -51.92 -0.42 -0.01 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.40 1.35 8.73 -40.82 -0.36 0.99 16 36 H 0.09 0.67 7.90 -51.93 -0.41 0.26 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.75 7.84 -51.93 -0.41 0.34 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.40 3.95 8.47 -40.82 -0.35 3.60 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.45 8.08 -51.93 -0.42 0.03 16 LS Contribution 395.55 15.07 5.96 5.96 Total: -1.00 -37.22 395.55 -8.37 -45.59 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.36 Total: -0.52 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 0.36 Total: -2.62 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.11 Total: -39.62 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.20 Total: -21.28 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.22 -8.37 -45.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757310552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.482 kcal (2) G-P(sol) polarization free energy of solvation -37.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds