Wall clock time and date at job start Tue Mar 31 2020 18:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99785 * 2 1 4 4 C 1.53001 * 109.46812 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46898 * 179.97438 * 4 3 2 6 6 O 1.21274 * 119.99964 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99508 * 179.97438 * 5 4 3 8 8 C 1.46508 * 119.99594 * 180.02562 * 7 5 4 9 9 H 1.09006 * 112.85122 * 336.19708 * 8 7 5 10 10 C 1.53779 * 113.69115 * 107.46541 * 8 7 5 11 11 C 1.53784 * 87.08045 * 139.99342 * 10 8 7 12 12 H 1.08994 * 113.61477 * 89.11454 * 11 10 8 13 13 C 1.52997 * 113.61270 * 220.02125 * 11 10 8 14 14 N 1.46498 * 109.47070 * 272.49429 * 13 11 10 15 15 C 1.34783 * 120.00214 * 179.97438 * 14 13 11 16 16 O 1.21287 * 119.99646 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00120 * 180.02562 * 15 14 13 18 18 S 1.80996 * 109.47167 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00148 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99858 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00036 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99758 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99918 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.46906 * 59.99489 * 23 21 19 25 25 H 1.48496 * 109.47030 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46681 * 299.99408 * 23 21 19 27 27 C 1.53779 * 113.61245 * 205.00346 * 8 7 5 28 28 H 1.09002 * 109.47445 * 59.99499 * 1 2 3 29 29 H 1.09000 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46833 * 299.99885 * 1 2 3 31 31 H 1.08995 * 109.47164 * 60.00336 * 3 2 1 32 32 H 1.09003 * 109.47161 * 300.00279 * 3 2 1 33 33 H 1.09009 * 109.47225 * 60.00366 * 4 3 2 34 34 H 1.09000 * 109.47259 * 300.00481 * 4 3 2 35 35 H 0.96996 * 120.00779 * 0.02562 * 7 5 4 36 36 H 1.09002 * 113.61557 * 25.44454 * 10 8 7 37 37 H 1.09004 * 113.61501 * 254.53874 * 10 8 7 38 38 H 1.08998 * 109.47573 * 32.49481 * 13 11 10 39 39 H 1.09003 * 109.47157 * 152.50001 * 13 11 10 40 40 H 0.96997 * 120.00287 * 0.02562 * 14 13 11 41 41 H 1.08998 * 109.46935 * 300.00333 * 17 15 14 42 42 H 1.09003 * 109.46788 * 60.00236 * 17 15 14 43 43 H 0.96998 * 119.99714 * 180.02562 * 22 21 19 44 44 H 1.08997 * 113.61646 * 105.38794 * 27 8 7 45 45 H 1.09000 * 113.61527 * 334.48065 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1484 2.5614 -0.0013 6 8 3.4355 3.5426 -0.0008 7 7 5.4887 2.7022 -0.0014 8 6 6.0846 4.0407 -0.0014 9 1 5.4172 4.8012 -0.4068 10 6 6.7221 4.4332 1.3418 11 6 7.8586 5.0720 0.5260 12 1 7.6761 6.1144 0.2649 13 6 9.2473 4.8426 1.1257 14 7 9.5405 5.8994 2.0969 15 6 10.7164 5.9020 2.7557 16 8 11.5319 5.0295 2.5442 17 6 11.0177 6.9888 3.7552 18 16 12.6600 6.7167 4.4656 19 6 12.7488 8.0899 5.5661 20 1 11.9227 8.7823 5.6333 21 6 13.8808 8.2823 6.3459 22 7 14.8878 7.4386 6.2636 23 14 13.9746 9.7377 7.5131 24 1 12.8688 9.6523 8.5006 25 1 15.2770 9.7174 8.2260 26 1 13.8521 11.0002 6.7408 27 6 7.5017 4.0840 -0.5971 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8465 -0.8900 33 1 3.8567 0.6439 -0.8910 34 1 3.8574 0.6435 0.8891 35 1 6.0589 1.9176 -0.0014 36 1 7.0406 3.5795 1.9401 37 1 6.1342 5.1540 1.9101 38 1 9.2722 3.8737 1.6245 39 1 9.9937 4.8617 0.3315 40 1 8.8882 6.5970 2.2664 41 1 10.9931 7.9578 3.2567 42 1 10.2711 6.9695 4.5491 43 1 15.6788 7.5729 6.8089 44 1 7.5431 4.5228 -1.5940 45 1 8.0332 3.1348 -0.5289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001757310552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:27 Heat of formation + Delta-G solvation = -140.684317 kcal Electronic energy + Delta-G solvation = -24253.025441 eV Core-core repulsion = 20395.963996 eV Total energy + Delta-G solvation = -3857.061445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34126 -40.57232 -39.53210 -38.62990 -35.76971 -34.58120 -34.35912 -32.69546 -31.27712 -28.41203 -27.65369 -27.38215 -26.65596 -25.03246 -23.01138 -21.85058 -21.47946 -20.52926 -19.74729 -18.38236 -17.88624 -17.62022 -17.32203 -16.90678 -16.86886 -16.73491 -16.61336 -16.18996 -15.93484 -15.73832 -15.65995 -14.81840 -14.76677 -14.54403 -14.39457 -14.04184 -13.56711 -13.40213 -13.21809 -13.16416 -12.95583 -12.86656 -12.81993 -12.63684 -12.40554 -12.22644 -12.14630 -11.80233 -11.65388 -11.38328 -11.12473 -10.98319 -10.85611 -10.69835 -10.27538 -10.08962 -9.99596 -8.66038 -8.34102 -6.12216 1.27913 1.44240 1.47578 1.56359 1.57718 1.63567 2.02125 2.27428 2.34403 2.97215 3.00030 3.32456 3.49570 3.59442 3.72713 3.82258 3.85366 4.03159 4.04459 4.13520 4.30393 4.31762 4.45987 4.50153 4.50445 4.52297 4.53540 4.72666 4.79671 4.80355 4.82669 4.84677 4.86495 4.90289 5.05446 5.11307 5.29707 5.42010 5.50268 5.62079 6.12123 6.20043 6.53269 6.53502 7.07176 7.21546 7.27125 8.74900 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.027172 B = 0.001481 C = 0.001450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.235004 B =18897.330319 C =19301.217551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.075 3.925 4 C -0.134 4.134 5 C 0.518 3.482 6 O -0.587 6.587 7 N -0.707 5.707 8 C 0.121 3.879 9 H 0.103 0.897 10 C -0.146 4.146 11 C -0.110 4.110 12 H 0.113 0.887 13 C 0.133 3.867 14 N -0.712 5.712 15 C 0.532 3.468 16 O -0.567 6.567 17 C -0.131 4.131 18 S -0.151 6.151 19 C -0.549 4.549 20 H 0.082 0.918 21 C 0.015 3.985 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.263 1.263 25 H -0.279 1.279 26 H -0.262 1.262 27 C -0.123 4.123 28 H 0.048 0.952 29 H 0.102 0.898 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.418 0.582 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.415 0.585 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.089 0.911 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.457 -11.233 -16.195 33.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.002 4.002 4 C -0.174 4.174 5 C 0.305 3.695 6 O -0.467 6.467 7 N -0.358 5.358 8 C 0.015 3.985 9 H 0.121 0.879 10 C -0.185 4.185 11 C -0.130 4.130 12 H 0.131 0.869 13 C 0.010 3.990 14 N -0.366 5.366 15 C 0.318 3.682 16 O -0.446 6.446 17 C -0.282 4.282 18 S 0.076 5.924 19 C -0.697 4.697 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.161 4.161 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.255 0.745 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.252 0.748 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.108 0.892 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -26.354 -12.226 -16.520 33.420 hybrid contribution -0.721 1.912 1.143 2.342 sum -27.075 -10.313 -15.376 32.800 Atomic orbital electron populations 1.22935 0.79325 1.04020 1.00766 1.87771 1.21562 1.28065 1.95631 1.22134 0.92962 0.84108 1.00979 1.21469 0.94407 0.93981 1.07520 1.20822 0.82762 0.91356 0.74511 1.90707 1.62035 1.42350 1.51619 1.45910 1.06226 1.09625 1.74023 1.22451 0.93738 0.85131 0.97139 0.87899 1.23569 0.96791 1.01130 0.96996 1.22550 0.91819 1.01229 0.97365 0.86870 1.21394 0.96515 0.90288 0.90850 1.45776 1.17515 1.30773 1.42509 1.20046 0.81907 0.85332 0.80932 1.90689 1.48411 1.39440 1.66035 1.23386 1.02702 1.01233 1.00911 1.85546 1.16674 1.38811 1.51377 1.23185 1.06416 1.12829 1.27231 0.89960 1.26109 0.94038 1.00277 0.98558 1.70176 1.06577 1.37783 1.40209 0.85018 0.77892 0.77491 0.77691 1.18720 1.20356 1.18660 1.23294 0.93756 1.00384 0.98682 0.93328 0.87989 0.93517 0.93430 0.93117 0.85908 0.86299 0.74473 0.89434 0.91236 0.92116 0.92031 0.74777 0.87255 0.87353 0.91981 0.89202 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -5.98 10.70 -148.98 -1.59 -7.58 16 3 C 0.08 1.04 5.23 71.98 0.38 1.42 16 4 C -0.13 -1.29 6.07 29.85 0.18 -1.11 16 5 C 0.52 7.49 7.83 87.66 0.69 8.18 16 6 O -0.59 -13.67 15.58 -3.01 -0.05 -13.72 16 7 N -0.71 -6.95 5.36 -440.03 -2.36 -9.31 16 8 C 0.12 1.37 4.24 45.51 0.19 1.56 16 9 H 0.10 1.53 7.47 -2.38 -0.02 1.51 16 10 C -0.15 -1.80 7.43 31.12 0.23 -1.57 16 11 C -0.11 -1.27 3.76 -10.27 -0.04 -1.31 16 12 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 13 C 0.13 2.54 5.51 86.38 0.48 3.02 16 14 N -0.71 -16.71 5.56 -463.06 -2.57 -19.28 16 15 C 0.53 19.12 7.85 87.66 0.69 19.81 16 16 O -0.57 -25.80 15.86 -3.05 -0.05 -25.85 16 17 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 18 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 19 C -0.55 -31.32 9.50 67.95 0.65 -30.68 16 20 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 21 C 0.02 0.85 5.49 84.86 0.47 1.32 16 22 N -0.91 -55.91 13.22 21.65 0.29 -55.63 16 23 Si 1.00 43.44 29.55 68.60 2.03 45.47 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 27 C -0.12 -1.04 7.39 31.12 0.23 -0.81 16 28 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 32 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.42 1.75 8.73 -92.71 -0.81 0.94 16 36 H 0.09 1.14 7.90 -2.39 -0.02 1.12 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 1.28 7.84 -2.39 -0.02 1.26 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.42 7.04 8.47 -92.71 -0.79 6.26 16 41 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 42 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 45 H 0.10 0.70 8.08 -2.39 -0.02 0.68 16 Total: -1.00 -83.26 395.55 -0.24 -83.51 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -0.59 Total: 15.29 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 5.82 Total: -3.37 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -4.64 Total: -84.21 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -1.69 Total: -47.15 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -83.26 -0.24 -83.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757310552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.179 kcal (2) G-P(sol) polarization free energy of solvation -83.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds