Wall clock time and date at job start Tue Mar 31 2020 17:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46778 * 2 1 4 4 N 1.46494 * 109.47124 * 119.99908 * 2 1 3 5 5 C 1.34780 * 120.00332 * 275.00157 * 4 2 1 6 6 O 1.21596 * 119.99507 * 0.02562 * 5 4 2 7 7 N 1.34768 * 120.00292 * 180.02562 * 5 4 2 8 8 C 1.40201 * 120.00142 * 180.02562 * 7 5 4 9 9 C 1.40396 * 125.97176 * 359.97438 * 8 7 5 10 10 C 1.35243 * 107.86896 * 179.97438 * 9 8 7 11 11 N 1.34962 * 107.85356 * 0.22585 * 10 9 8 12 12 C 1.46501 * 125.97082 * 179.76577 * 11 10 9 13 13 C 1.50703 * 109.46706 * 125.00181 * 12 11 10 14 14 H 1.07992 * 120.00189 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99721 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99839 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00259 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46837 * 89.99815 * 17 15 13 19 19 H 1.48493 * 109.47140 * 209.99651 * 17 15 13 20 20 H 1.48494 * 109.46790 * 329.99908 * 17 15 13 21 21 N 1.31202 * 125.97171 * 179.97438 * 8 7 5 22 22 C 1.50702 * 109.47355 * 240.00294 * 2 1 3 23 23 C 1.38286 * 119.97127 * 279.99528 * 22 2 1 24 24 C 1.38247 * 120.11459 * 179.97438 * 23 22 2 25 25 C 1.38165 * 120.05006 * 0.02562 * 24 23 22 26 26 C 1.38705 * 119.94962 * 0.02562 * 25 24 23 27 27 O 1.35901 * 120.05829 * 180.02562 * 26 25 24 28 28 C 1.38122 * 119.97287 * 99.72533 * 22 2 1 29 29 H 1.09007 * 109.46819 * 60.00290 * 1 2 3 30 30 H 1.08998 * 109.46592 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47286 * 299.99833 * 1 2 3 32 32 H 0.96998 * 120.00015 * 95.00182 * 4 2 1 33 33 H 0.96998 * 120.00056 * 359.97438 * 7 5 4 34 34 H 1.08003 * 126.06768 * 359.93842 * 9 8 7 35 35 H 1.08002 * 126.06857 * 179.97438 * 10 9 8 36 36 H 1.09000 * 109.47836 * 245.00121 * 12 11 10 37 37 H 1.08997 * 109.47518 * 5.00660 * 12 11 10 38 38 H 0.96996 * 120.00319 * 180.02562 * 16 15 13 39 39 H 1.08002 * 119.94150 * 359.97438 * 23 22 2 40 40 H 1.07997 * 119.97588 * 180.02562 * 24 23 22 41 41 H 1.08009 * 120.02271 * 180.02562 * 25 24 23 42 42 H 0.96698 * 114.00154 * 90.00029 * 27 26 25 43 43 H 1.07998 * 120.03045 * 359.97438 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0182 2.3572 6 8 1.8574 1.1614 2.4118 7 7 2.5967 -0.6534 3.4574 8 6 2.7301 0.0458 4.6653 9 6 2.4336 1.4028 4.8696 10 6 2.6940 1.6941 6.1644 11 7 3.1433 0.5690 6.7593 12 6 3.5470 0.4395 8.1616 13 6 2.7661 -0.6756 8.8081 14 1 2.0419 -1.2323 8.2320 15 6 2.9770 -0.9857 10.1350 16 7 2.2959 -1.9592 10.6990 17 14 4.2301 -0.0232 11.1314 18 1 3.5665 1.1435 11.7667 19 1 4.8043 -0.8996 12.1837 20 1 5.3153 0.4515 10.2359 21 7 3.1538 -0.4535 5.8021 22 6 2.0324 -0.7103 -1.2305 23 6 2.0667 -2.0924 -1.2648 24 6 2.5265 -2.7470 -2.3922 25 6 2.9535 -2.0215 -3.4877 26 6 2.9212 -0.6352 -3.4555 27 8 3.3402 0.0807 -4.5320 28 6 2.4530 0.0194 -2.3252 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.2490 -1.6317 1.1526 33 1 2.8275 -1.5945 3.4139 34 1 2.0638 2.0921 4.1249 35 1 2.5690 2.6571 6.6371 36 1 4.6123 0.2148 8.2139 37 1 3.3467 1.3742 8.6853 38 1 2.4439 -2.1771 11.6325 39 1 1.7336 -2.6612 -0.4092 40 1 2.5519 -3.8264 -2.4167 41 1 3.3123 -2.5334 -4.3685 42 1 2.6410 0.2763 -5.1707 43 1 2.4216 1.0986 -2.2997 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173368326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:00 Heat of formation + Delta-G solvation = 46.073189 kcal Electronic energy + Delta-G solvation = -26479.323954 eV Core-core repulsion = 22527.209722 eV Total energy + Delta-G solvation = -3952.114232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.89795 -40.37475 -39.52380 -37.57417 -35.57510 -34.63652 -33.31749 -32.09490 -31.07333 -30.19708 -29.45466 -29.23644 -27.06123 -24.50072 -23.23730 -22.82479 -21.97779 -21.00064 -20.33379 -19.87919 -18.64544 -18.01910 -17.09518 -16.90377 -16.57647 -16.28276 -15.75383 -15.49297 -15.38263 -14.76055 -14.63902 -14.38070 -14.15485 -13.94852 -13.64878 -13.40107 -13.05146 -12.68554 -12.55801 -12.49130 -12.39810 -12.29120 -12.11588 -11.84500 -11.60283 -11.14262 -10.84882 -10.77115 -10.63099 -10.10912 -9.98535 -9.76086 -9.50994 -9.44148 -9.22556 -9.05697 -8.75405 -8.15135 -7.45912 -6.22338 -4.24360 0.75770 0.85135 2.33935 2.61104 3.06113 3.15697 3.16555 3.23665 3.24393 3.50965 3.75327 3.81624 4.17725 4.23941 4.27466 4.44181 4.66503 4.79740 4.93357 5.00119 5.05576 5.10705 5.31054 5.41719 5.44625 5.50502 5.63483 5.71818 5.89914 5.95195 5.99103 6.00757 6.17079 6.28571 6.35086 6.37261 6.48644 6.59452 6.73854 6.96145 7.20317 7.29322 7.45231 7.84072 7.89629 8.35454 8.56440 8.61427 8.87812 9.32802 10.90376 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027951 B = 0.001938 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.500457 B =14446.351832 C =14721.946814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.204 3.796 3 H 0.101 0.899 4 N -0.739 5.739 5 C 0.716 3.284 6 O -0.566 6.566 7 N -0.643 5.643 8 C 0.279 3.721 9 C -0.282 4.282 10 C 0.050 3.950 11 N -0.321 5.321 12 C 0.232 3.768 13 C -0.533 4.533 14 H 0.085 0.915 15 C 0.075 3.925 16 N -0.888 5.888 17 Si 0.873 3.127 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.264 1.264 21 N -0.300 5.300 22 C -0.072 4.072 23 C -0.122 4.122 24 C -0.098 4.098 25 C -0.146 4.146 26 C 0.108 3.892 27 O -0.499 6.499 28 C -0.132 4.132 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.396 0.604 33 H 0.407 0.593 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.041 0.959 37 H 0.049 0.951 38 H 0.268 0.732 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.391 0.609 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.416 1.799 -29.119 29.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.098 3.902 3 H 0.119 0.881 4 N -0.396 5.396 5 C 0.415 3.585 6 O -0.442 6.442 7 N -0.293 5.293 8 C 0.024 3.976 9 C -0.313 4.313 10 C -0.099 4.099 11 N -0.102 5.102 12 C 0.113 3.887 13 C -0.572 4.572 14 H 0.104 0.896 15 C -0.128 4.128 16 N -0.525 5.525 17 Si 0.699 3.301 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.189 1.189 21 N -0.131 5.131 22 C -0.073 4.073 23 C -0.140 4.140 24 C -0.117 4.117 25 C -0.165 4.165 26 C 0.063 3.937 27 O -0.309 6.309 28 C -0.151 4.151 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.231 0.769 33 H 0.242 0.758 34 H 0.180 0.820 35 H 0.186 0.814 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.247 0.753 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.705 1.719 -27.884 27.946 hybrid contribution 0.099 0.071 0.000 0.122 sum -0.606 1.790 -27.883 27.947 Atomic orbital electron populations 1.22207 0.93936 1.02600 1.03095 1.19622 0.94165 0.96521 0.79846 0.88132 1.45172 1.72262 1.13747 1.08467 1.15576 0.78274 0.84926 0.79692 1.90863 1.55711 1.13871 1.83735 1.41372 1.68258 1.13389 1.06257 1.18780 1.01710 0.91401 0.85662 1.21533 1.17302 0.95591 0.96903 1.22551 1.00552 0.93128 0.93671 1.48581 1.47558 1.04586 1.09512 1.20034 0.96996 0.99304 0.72352 1.21116 1.23485 1.16441 0.96112 0.89648 1.24841 0.95769 0.94966 0.97246 1.69872 1.40676 1.29018 1.12982 0.86901 0.82104 0.80400 0.80675 1.19721 1.20565 1.18860 1.77382 1.27310 1.12598 0.95783 1.19828 0.98563 0.93813 0.95077 1.20994 1.00672 0.93722 0.98661 1.21040 0.97739 1.00161 0.92713 1.21473 1.01647 0.93350 0.99999 1.18431 0.97304 0.89672 0.88246 1.84844 1.38666 1.74321 1.33106 1.21282 0.99642 1.00768 0.93444 0.91472 0.92212 0.90994 0.76870 0.75785 0.81978 0.81440 0.94076 0.93343 0.92208 0.85620 0.85280 0.85376 0.75318 0.84969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.46 37.16 0.35 -0.98 16 2 C 0.20 1.83 2.77 -69.08 -0.19 1.63 16 3 H 0.10 1.05 7.44 -51.93 -0.39 0.66 16 4 N -0.74 -7.36 5.03 -59.81 -0.30 -7.67 16 5 C 0.72 10.31 8.50 -86.92 -0.74 9.57 16 6 O -0.57 -9.87 13.13 5.28 0.07 -9.80 16 7 N -0.64 -9.95 5.45 -15.51 -0.08 -10.03 16 8 C 0.28 5.59 8.11 -154.36 -1.25 4.34 16 9 C -0.28 -5.53 9.61 -39.84 -0.38 -5.92 16 10 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 11 N -0.32 -7.31 3.67 -62.56 -0.23 -7.54 16 12 C 0.23 5.53 5.33 -5.19 -0.03 5.50 16 13 C -0.53 -15.10 9.79 -34.44 -0.34 -15.43 16 14 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 15 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 16 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 17 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 21 N -0.30 -6.90 12.42 31.44 0.39 -6.51 16 22 C -0.07 -0.56 4.95 -104.65 -0.52 -1.08 16 23 C -0.12 -0.82 9.05 -39.56 -0.36 -1.18 16 24 C -0.10 -0.61 10.04 -39.61 -0.40 -1.01 16 25 C -0.15 -0.99 9.99 -39.44 -0.39 -1.38 16 26 C 0.11 0.82 6.71 -39.22 -0.26 0.56 16 27 O -0.50 -3.43 13.50 -19.43 -0.26 -3.69 16 28 C -0.13 -1.03 9.61 -39.43 -0.38 -1.41 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.40 2.94 6.88 -40.82 -0.28 2.66 16 33 H 0.41 5.13 8.84 -40.82 -0.36 4.77 16 34 H 0.16 3.11 5.91 -52.48 -0.31 2.80 16 35 H 0.17 2.57 8.06 -52.49 -0.42 2.15 16 36 H 0.04 0.98 7.20 -51.93 -0.37 0.60 16 37 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.13 0.65 6.91 -52.49 -0.36 0.28 16 40 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 42 H 0.39 0.75 9.06 45.56 0.41 1.16 16 43 H 0.13 0.93 8.04 -52.49 -0.42 0.51 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -36.23 368.95 -8.53 -44.76 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -4.60 Total: 9.25 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -5.18 Total: -3.98 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 0.55 Total: -57.63 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.19 Total: -13.49 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.23 -8.53 -44.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173368326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.835 kcal (2) G-P(sol) polarization free energy of solvation -36.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds