Wall clock time and date at job start Tue Mar 31 2020 17:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46778 * 2 1 4 4 N 1.46494 * 109.47124 * 119.99908 * 2 1 3 5 5 C 1.34780 * 120.00332 * 275.00157 * 4 2 1 6 6 O 1.21596 * 119.99507 * 0.02562 * 5 4 2 7 7 N 1.34768 * 120.00292 * 180.02562 * 5 4 2 8 8 C 1.40201 * 120.00142 * 180.02562 * 7 5 4 9 9 C 1.40396 * 125.97176 * 359.97438 * 8 7 5 10 10 C 1.35243 * 107.86896 * 179.97438 * 9 8 7 11 11 N 1.34962 * 107.85356 * 0.22585 * 10 9 8 12 12 C 1.46501 * 125.97082 * 179.76577 * 11 10 9 13 13 C 1.50703 * 109.46706 * 125.00181 * 12 11 10 14 14 H 1.07992 * 120.00189 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99721 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99839 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00259 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46837 * 89.99815 * 17 15 13 19 19 H 1.48493 * 109.47140 * 209.99651 * 17 15 13 20 20 H 1.48494 * 109.46790 * 329.99908 * 17 15 13 21 21 N 1.31202 * 125.97171 * 179.97438 * 8 7 5 22 22 C 1.50702 * 109.47355 * 240.00294 * 2 1 3 23 23 C 1.38286 * 119.97127 * 279.99528 * 22 2 1 24 24 C 1.38247 * 120.11459 * 179.97438 * 23 22 2 25 25 C 1.38165 * 120.05006 * 0.02562 * 24 23 22 26 26 C 1.38705 * 119.94962 * 0.02562 * 25 24 23 27 27 O 1.35901 * 120.05829 * 180.02562 * 26 25 24 28 28 C 1.38122 * 119.97287 * 99.72533 * 22 2 1 29 29 H 1.09007 * 109.46819 * 60.00290 * 1 2 3 30 30 H 1.08998 * 109.46592 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47286 * 299.99833 * 1 2 3 32 32 H 0.96998 * 120.00015 * 95.00182 * 4 2 1 33 33 H 0.96998 * 120.00056 * 359.97438 * 7 5 4 34 34 H 1.08003 * 126.06768 * 359.93842 * 9 8 7 35 35 H 1.08002 * 126.06857 * 179.97438 * 10 9 8 36 36 H 1.09000 * 109.47836 * 245.00121 * 12 11 10 37 37 H 1.08997 * 109.47518 * 5.00660 * 12 11 10 38 38 H 0.96996 * 120.00319 * 180.02562 * 16 15 13 39 39 H 1.08002 * 119.94150 * 359.97438 * 23 22 2 40 40 H 1.07997 * 119.97588 * 180.02562 * 24 23 22 41 41 H 1.08009 * 120.02271 * 180.02562 * 25 24 23 42 42 H 0.96698 * 114.00154 * 90.00029 * 27 26 25 43 43 H 1.07998 * 120.03045 * 359.97438 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0182 2.3572 6 8 1.8574 1.1614 2.4118 7 7 2.5967 -0.6534 3.4574 8 6 2.7301 0.0458 4.6653 9 6 2.4336 1.4028 4.8696 10 6 2.6940 1.6941 6.1644 11 7 3.1433 0.5690 6.7593 12 6 3.5470 0.4395 8.1616 13 6 2.7661 -0.6756 8.8081 14 1 2.0419 -1.2323 8.2320 15 6 2.9770 -0.9857 10.1350 16 7 2.2959 -1.9592 10.6990 17 14 4.2301 -0.0232 11.1314 18 1 3.5665 1.1435 11.7667 19 1 4.8043 -0.8996 12.1837 20 1 5.3153 0.4515 10.2359 21 7 3.1538 -0.4535 5.8021 22 6 2.0324 -0.7103 -1.2305 23 6 2.0667 -2.0924 -1.2648 24 6 2.5265 -2.7470 -2.3922 25 6 2.9535 -2.0215 -3.4877 26 6 2.9212 -0.6352 -3.4555 27 8 3.3402 0.0807 -4.5320 28 6 2.4530 0.0194 -2.3252 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.2490 -1.6317 1.1526 33 1 2.8275 -1.5945 3.4139 34 1 2.0638 2.0921 4.1249 35 1 2.5690 2.6571 6.6371 36 1 4.6123 0.2148 8.2139 37 1 3.3467 1.3742 8.6853 38 1 2.4439 -2.1771 11.6325 39 1 1.7336 -2.6612 -0.4092 40 1 2.5519 -3.8264 -2.4167 41 1 3.3123 -2.5334 -4.3685 42 1 2.6410 0.2763 -5.1707 43 1 2.4216 1.0986 -2.2997 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173368326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:56 Heat of formation + Delta-G solvation = 19.150815 kcal Electronic energy + Delta-G solvation = -26480.491396 eV Core-core repulsion = 22527.209722 eV Total energy + Delta-G solvation = -3953.281673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.26066 -41.29567 -40.49475 -38.22457 -36.49351 -35.94381 -35.20190 -33.37363 -32.37725 -31.00409 -30.77073 -29.98473 -28.86815 -25.38062 -24.48137 -23.73952 -23.16535 -22.08724 -21.52282 -21.28441 -19.55174 -19.07318 -18.91327 -18.14536 -17.45281 -17.18925 -16.81812 -16.65850 -16.26318 -16.10787 -15.78901 -15.50964 -15.38516 -14.81558 -14.75315 -14.54826 -14.35626 -14.21282 -13.84557 -13.79234 -13.27931 -13.08534 -13.01309 -12.94441 -12.52189 -12.41072 -12.34701 -12.21281 -11.82388 -11.61676 -11.46040 -11.38988 -11.12872 -10.85791 -10.33501 -9.84421 -9.72761 -9.58621 -9.03156 -8.36386 -6.46357 0.22248 0.32718 1.06010 1.13723 1.37528 1.40801 1.50369 1.70191 2.09474 2.29976 2.40419 2.65759 2.96010 3.10252 3.28579 3.58131 3.92832 3.94386 4.18622 4.22261 4.24930 4.27862 4.33642 4.58599 4.62147 4.69457 4.75519 4.85974 4.88252 4.93398 4.95321 5.01168 5.14259 5.24965 5.26269 5.35564 5.43264 5.45483 5.61477 5.80127 5.87294 5.93733 6.03493 6.43076 6.58745 6.71514 6.86379 7.12334 7.16745 7.40685 8.80647 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027951 B = 0.001938 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.500457 B =14446.351832 C =14721.946814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.205 3.795 3 H 0.084 0.916 4 N -0.719 5.719 5 C 0.715 3.285 6 O -0.597 6.597 7 N -0.638 5.638 8 C 0.285 3.715 9 C -0.293 4.293 10 C 0.060 3.940 11 N -0.345 5.345 12 C 0.239 3.761 13 C -0.546 4.546 14 H 0.026 0.974 15 C 0.013 3.987 16 N -0.942 5.942 17 Si 0.956 3.044 18 H -0.253 1.253 19 H -0.281 1.281 20 H -0.240 1.240 21 N -0.350 5.350 22 C -0.077 4.077 23 C -0.127 4.127 24 C -0.098 4.098 25 C -0.152 4.152 26 C 0.100 3.900 27 O -0.513 6.513 28 C -0.145 4.145 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.411 0.589 33 H 0.420 0.580 34 H 0.168 0.832 35 H 0.210 0.790 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.272 0.728 39 H 0.141 0.859 40 H 0.152 0.848 41 H 0.142 0.858 42 H 0.410 0.590 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.361 2.726 -30.120 30.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.101 3.899 3 H 0.102 0.898 4 N -0.376 5.376 5 C 0.414 3.586 6 O -0.474 6.474 7 N -0.290 5.290 8 C 0.029 3.971 9 C -0.324 4.324 10 C -0.088 4.088 11 N -0.127 5.127 12 C 0.120 3.880 13 C -0.584 4.584 14 H 0.045 0.955 15 C -0.185 4.185 16 N -0.581 5.581 17 Si 0.777 3.223 18 H -0.178 1.178 19 H -0.207 1.207 20 H -0.163 1.163 21 N -0.181 5.181 22 C -0.078 4.078 23 C -0.145 4.145 24 C -0.116 4.116 25 C -0.170 4.170 26 C 0.055 3.945 27 O -0.326 6.326 28 C -0.164 4.164 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.249 0.751 33 H 0.257 0.743 34 H 0.186 0.814 35 H 0.227 0.773 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.159 0.841 40 H 0.170 0.830 41 H 0.160 0.840 42 H 0.270 0.730 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.331 2.621 -28.974 29.094 hybrid contribution -0.332 -0.281 0.084 0.443 sum -0.001 2.340 -28.890 28.984 Atomic orbital electron populations 1.22150 0.93271 1.03182 1.02663 1.19643 0.94617 0.95842 0.79795 0.89754 1.45069 1.70913 1.14334 1.07291 1.15719 0.77940 0.84682 0.80221 1.90832 1.56978 1.15340 1.84283 1.41401 1.68294 1.13941 1.05319 1.19116 0.99854 0.91962 0.86181 1.21731 1.17737 0.95586 0.97362 1.23242 0.98304 0.93690 0.93530 1.48482 1.49408 1.05581 1.09273 1.19881 0.96245 0.98786 0.73136 1.21234 1.23135 1.17647 0.96364 0.95515 1.25930 0.98154 0.96008 0.98449 1.70049 1.43014 1.31338 1.13697 0.85611 0.79250 0.78869 0.78619 1.17754 1.20662 1.16279 1.77298 1.29800 1.14020 0.96935 1.19674 0.99483 0.94296 0.94344 1.21203 1.00476 0.93294 0.99509 1.21328 0.96776 1.01352 0.92124 1.21718 1.01366 0.93136 1.00780 1.18558 0.97308 0.90195 0.88396 1.84788 1.40061 1.74338 1.33436 1.21370 1.00249 1.00997 0.93818 0.89937 0.91090 0.93352 0.75127 0.74334 0.81446 0.77298 0.93713 0.90062 0.91911 0.84101 0.83041 0.84020 0.73043 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.46 71.98 0.68 -1.76 16 2 C 0.21 3.55 2.77 44.25 0.12 3.67 16 3 H 0.08 1.77 7.44 -2.38 -0.02 1.75 16 4 N -0.72 -13.68 5.03 -461.41 -2.32 -16.00 16 5 C 0.71 20.37 8.50 179.06 1.52 21.89 16 6 O -0.60 -20.82 13.13 -4.02 -0.05 -20.88 16 7 N -0.64 -19.69 5.45 -321.24 -1.75 -21.45 16 8 C 0.28 11.48 8.11 133.31 1.08 12.56 16 9 C -0.29 -11.35 9.61 22.10 0.21 -11.14 16 10 C 0.06 2.25 11.44 83.52 0.96 3.21 16 11 N -0.35 -15.64 3.67 -351.84 -1.29 -16.94 16 12 C 0.24 11.16 5.33 85.63 0.46 11.61 16 13 C -0.55 -31.65 9.79 25.60 0.25 -31.39 16 14 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 15 C 0.01 0.76 5.47 84.66 0.46 1.22 16 16 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 17 Si 0.96 40.86 27.47 68.60 1.88 42.74 16 18 H -0.25 -10.06 7.11 99.48 0.71 -9.36 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 21 N -0.35 -16.40 12.42 -54.44 -0.68 -17.07 16 22 C -0.08 -1.10 4.95 -19.88 -0.10 -1.20 16 23 C -0.13 -1.44 9.05 22.28 0.20 -1.23 16 24 C -0.10 -0.99 10.04 22.25 0.22 -0.76 16 25 C -0.15 -1.76 9.99 22.36 0.22 -1.54 16 26 C 0.10 1.40 6.71 22.51 0.15 1.55 16 27 O -0.51 -6.45 13.50 -92.43 -1.25 -7.70 16 28 C -0.15 -2.15 9.61 22.37 0.21 -1.94 16 29 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.41 5.46 6.88 -92.71 -0.64 4.82 16 33 H 0.42 10.48 8.84 -92.71 -0.82 9.67 16 34 H 0.17 6.33 5.91 -2.91 -0.02 6.31 16 35 H 0.21 5.75 8.06 -2.91 -0.02 5.72 16 36 H 0.05 2.05 7.20 -2.39 -0.02 2.03 16 37 H 0.08 3.25 7.50 -2.39 -0.02 3.23 16 38 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 39 H 0.14 1.09 6.91 -2.91 -0.02 1.07 16 40 H 0.15 0.81 8.06 -2.91 -0.02 0.78 16 41 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 42 H 0.41 1.07 9.06 -74.06 -0.67 0.40 16 43 H 0.13 1.84 8.04 -2.91 -0.02 1.82 16 Total: -1.00 -81.87 368.95 0.40 -81.47 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: -1.10 Total: 28.96 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 6.66 Total: 4.74 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -5.74 Total: -129.33 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -1.30 Total: -28.58 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.88 Total: 42.74 kcal Total: -81.87 0.40 -81.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173368326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.617 kcal (2) G-P(sol) polarization free energy of solvation -81.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds