Wall clock time and date at job start Tue Mar 31 2020 18:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.46960 * 2 1 4 4 C 1.50702 * 109.47232 * 119.99838 * 2 1 3 5 5 O 1.21283 * 119.99955 * 97.05741 * 4 2 1 6 6 N 1.34783 * 119.99855 * 277.06123 * 4 2 1 7 7 C 1.46499 * 119.99815 * 7.52424 * 6 4 2 8 8 C 1.50703 * 109.46930 * 92.92160 * 7 6 4 9 9 H 1.07995 * 119.99813 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99511 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00548 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99556 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47262 * 59.99409 * 12 10 8 14 14 H 1.48504 * 109.47161 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47146 * 299.99695 * 12 10 8 16 16 C 1.39923 * 119.99805 * 187.52858 * 6 4 2 17 17 C 1.38877 * 120.06756 * 186.25219 * 16 6 4 18 18 C 1.38107 * 119.92389 * 179.76538 * 17 16 6 19 19 C 1.38280 * 120.07233 * 0.48706 * 18 17 16 20 20 C 1.38275 * 120.14452 * 359.76599 * 19 18 17 21 21 C 1.38111 * 120.06962 * 0.02562 * 20 19 18 22 22 N 1.46504 * 109.47183 * 239.99861 * 2 1 3 23 23 C 1.35312 * 125.86626 * 324.71165 * 22 2 1 24 24 C 1.35352 * 106.17200 * 179.90700 * 23 22 2 25 25 C 1.50701 * 126.74966 * 180.12636 * 24 23 22 26 26 O 1.42898 * 109.47109 * 0.29949 * 25 24 23 27 27 N 1.33770 * 106.49698 * 0.35211 * 24 23 22 28 28 N 1.28628 * 108.88671 * 359.77753 * 27 24 23 29 29 H 1.08998 * 109.47339 * 53.16777 * 1 2 3 30 30 H 1.08998 * 109.47120 * 173.16317 * 1 2 3 31 31 H 1.09000 * 109.47278 * 293.16421 * 1 2 3 32 32 H 1.09004 * 109.46943 * 212.91858 * 7 6 4 33 33 H 1.09000 * 109.47616 * 332.91765 * 7 6 4 34 34 H 0.97003 * 120.00539 * 180.02562 * 11 10 8 35 35 H 1.07996 * 120.03243 * 359.97407 * 17 16 6 36 36 H 1.08003 * 119.96567 * 180.25192 * 18 17 16 37 37 H 1.08012 * 119.92851 * 179.74361 * 19 18 17 38 38 H 1.08008 * 119.97014 * 179.97438 * 20 19 18 39 39 H 1.08003 * 120.04132 * 179.97438 * 21 20 19 40 40 H 1.08001 * 126.91024 * 0.02562 * 23 22 2 41 41 H 1.08997 * 109.46905 * 120.29131 * 25 24 23 42 42 H 1.08995 * 109.47300 * 240.29437 * 25 24 23 43 43 H 0.96695 * 114.00168 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3561 -1.8775 1.1672 6 7 2.1217 -0.0487 2.4013 7 6 1.5788 1.3068 2.5199 8 6 0.1618 1.2377 3.0284 9 1 -0.2893 0.2798 3.2415 10 6 -0.5589 2.3972 3.2206 11 7 -0.0098 3.5636 2.9606 12 14 -2.3151 2.3116 3.8516 13 1 -2.3312 1.6542 5.1831 14 1 -2.8655 3.6856 3.9717 15 1 -3.1445 1.5269 2.9021 16 6 2.7330 -0.6565 3.5035 17 6 2.7117 -0.0314 4.7434 18 6 3.3118 -0.6362 5.8303 19 6 3.9422 -1.8580 5.6827 20 6 3.9698 -2.4806 4.4484 21 6 3.3678 -1.8831 3.3584 22 7 2.0183 -0.6907 -1.1962 23 6 1.4387 -1.7622 -1.7851 24 6 2.2134 -2.0714 -2.8511 25 6 1.9890 -3.1913 -3.8342 26 8 0.8022 -3.9045 -3.4810 27 7 3.2200 -1.1904 -2.8574 28 7 3.0755 -0.3860 -1.8642 29 1 -0.3634 0.6160 -0.8225 30 1 -0.3633 -1.0203 -0.1223 31 1 -0.3634 0.4042 0.9448 32 1 2.1874 1.8822 3.2175 33 1 1.5910 1.7900 1.5429 34 1 -0.5167 4.3794 3.0962 35 1 2.2234 0.9250 4.8582 36 1 3.2921 -0.1525 6.7958 37 1 4.4145 -2.3270 6.5335 38 1 4.4633 -3.4347 4.3362 39 1 3.3900 -2.3696 2.3944 40 1 0.5380 -2.2676 -1.4693 41 1 1.8797 -2.7781 -4.8368 42 1 2.8412 -3.8705 -3.8120 43 1 0.5952 -4.6410 -4.0724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603175250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:00 Heat of formation + Delta-G solvation = 64.950623 kcal Electronic energy + Delta-G solvation = -28566.583476 eV Core-core repulsion = 24615.287831 eV Total energy + Delta-G solvation = -3951.295645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.13049 -40.49858 -38.10080 -37.03799 -35.59846 -35.08147 -32.92441 -31.63719 -30.74463 -30.42108 -29.16893 -27.60959 -26.75688 -24.80284 -23.65574 -22.99250 -21.89345 -21.23213 -21.01896 -19.35944 -17.51452 -17.27692 -17.04248 -16.79171 -16.66195 -16.07575 -15.48923 -15.03117 -14.80590 -14.62835 -14.43804 -14.37852 -13.99735 -13.72731 -13.30857 -12.98125 -12.91848 -12.50787 -12.37055 -12.15709 -12.06867 -11.73857 -11.57985 -11.43441 -11.30078 -11.20337 -10.92547 -10.74785 -10.70833 -10.60207 -10.46883 -10.25920 -9.98669 -9.39969 -9.06320 -8.86110 -8.75633 -8.44391 -7.38464 -6.44903 -4.55383 1.66057 1.80317 1.90123 2.37277 2.64967 2.86448 3.09345 3.16353 3.19244 3.41948 3.80458 4.10664 4.36217 4.55036 4.57757 4.85033 4.92653 4.98114 5.09108 5.15154 5.35369 5.36920 5.40953 5.59807 5.61021 5.72686 5.80967 5.93464 5.96593 6.00710 6.01783 6.20050 6.37288 6.48706 6.59005 6.66005 6.79924 6.85691 6.93222 7.01437 7.12078 7.43095 7.46645 7.62522 7.67073 7.82631 8.31643 8.53719 8.68908 9.13083 10.60788 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.009528 B = 0.004605 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.003638 B = 6078.630982 C = 8096.027038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.132 3.868 3 H 0.142 0.858 4 C 0.512 3.488 5 O -0.526 6.526 6 N -0.525 5.525 7 C 0.222 3.778 8 C -0.549 4.549 9 H 0.067 0.933 10 C 0.073 3.927 11 N -0.881 5.881 12 Si 0.898 3.102 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.167 3.833 17 C -0.138 4.138 18 C -0.105 4.105 19 C -0.156 4.156 20 C -0.108 4.108 21 C -0.171 4.171 22 N -0.273 5.273 23 C 0.007 3.993 24 C -0.047 4.047 25 C 0.173 3.827 26 O -0.570 6.570 27 N -0.265 5.265 28 N -0.082 5.082 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.133 0.867 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.271 0.729 35 H 0.141 0.859 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.168 0.832 40 H 0.190 0.810 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.321 -8.926 -5.395 10.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.027 3.973 3 H 0.159 0.841 4 C 0.299 3.701 5 O -0.405 6.405 6 N -0.244 5.244 7 C 0.103 3.897 8 C -0.586 4.586 9 H 0.085 0.915 10 C -0.132 4.132 11 N -0.517 5.517 12 Si 0.725 3.275 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.198 1.198 16 C 0.072 3.928 17 C -0.158 4.158 18 C -0.124 4.124 19 C -0.175 4.175 20 C -0.127 4.127 21 C -0.191 4.191 22 N -0.066 5.066 23 C -0.144 4.144 24 C -0.185 4.185 25 C 0.094 3.906 26 O -0.375 6.375 27 N -0.133 5.133 28 N -0.061 5.061 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.151 0.849 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.159 0.841 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.185 0.815 40 H 0.207 0.793 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.600 -7.823 -5.109 9.698 hybrid contribution -1.910 -0.804 0.338 2.100 sum 0.690 -8.627 -4.770 9.882 Atomic orbital electron populations 1.22440 0.88546 1.03838 1.08134 1.21661 0.98523 0.97537 0.79550 0.84106 1.20315 0.78417 0.86624 0.84706 1.90428 1.49137 1.16046 1.84858 1.45869 1.52215 1.18545 1.07817 1.19878 0.95040 0.75257 0.99517 1.21266 0.97008 0.93570 1.46798 0.91494 1.24919 0.98819 0.94937 0.94540 1.69892 1.37727 0.97784 1.46340 0.86536 0.83615 0.77480 0.79898 1.19830 1.20922 1.19802 1.17979 0.94361 0.93248 0.87227 1.21130 1.01820 1.02008 0.90843 1.20890 0.98001 0.95442 0.98046 1.21008 1.02595 0.96534 0.97398 1.20992 0.99462 0.99455 0.92787 1.22395 0.99054 0.95568 1.02073 1.47156 1.17475 1.21514 1.20428 1.23164 1.03040 0.92274 0.95968 1.21503 0.95891 1.01189 0.99890 1.19808 0.87368 0.89697 0.93771 1.86406 1.44238 1.49119 1.57746 1.74914 1.20732 1.03658 1.14016 1.78281 1.04058 1.21232 1.02562 0.90523 0.91388 0.84945 0.93081 0.93477 0.91935 0.84105 0.86293 0.86964 0.86679 0.81550 0.79340 0.91777 0.91751 0.76593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 8.89 37.15 0.33 -2.34 16 2 C 0.13 2.29 2.83 -69.08 -0.20 2.09 16 3 H 0.14 2.40 6.42 -51.93 -0.33 2.07 16 4 C 0.51 10.04 6.79 -10.98 -0.07 9.97 16 5 O -0.53 -11.11 12.86 5.55 0.07 -11.04 16 6 N -0.53 -10.59 2.68 -114.73 -0.31 -10.90 16 7 C 0.22 4.69 4.14 -5.19 -0.02 4.67 16 8 C -0.55 -12.43 6.78 -34.44 -0.23 -12.66 16 9 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 10 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 11 N -0.88 -21.70 13.29 55.43 0.74 -20.96 16 12 Si 0.90 18.64 29.54 -169.99 -5.02 13.62 16 13 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 14 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 15 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 16 C 0.17 3.34 6.49 -83.69 -0.54 2.79 16 17 C -0.14 -2.58 9.10 -39.39 -0.36 -2.94 16 18 C -0.11 -1.69 10.04 -39.61 -0.40 -2.09 16 19 C -0.16 -2.38 10.04 -39.55 -0.40 -2.77 16 20 C -0.11 -1.77 10.04 -39.61 -0.40 -2.17 16 21 C -0.17 -3.27 8.98 -39.39 -0.35 -3.63 16 22 N -0.27 -4.82 2.94 -55.89 -0.16 -4.98 16 23 C 0.01 0.11 9.70 -17.05 -0.17 -0.05 16 24 C -0.05 -0.74 7.22 -82.78 -0.60 -1.34 16 25 C 0.17 1.90 7.67 36.01 0.28 2.18 16 26 O -0.57 -5.70 13.04 -35.23 -0.46 -6.16 16 27 N -0.26 -4.80 12.41 33.29 0.41 -4.38 16 28 N -0.08 -1.58 13.16 60.35 0.79 -0.78 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.97 6.83 -51.93 -0.35 0.62 16 31 H 0.13 2.35 5.22 -51.93 -0.27 2.08 16 32 H 0.05 1.15 6.66 -51.93 -0.35 0.80 16 33 H 0.05 0.99 5.76 -51.93 -0.30 0.69 16 34 H 0.27 6.43 8.31 -40.82 -0.34 6.10 16 35 H 0.14 2.77 6.20 -52.49 -0.33 2.45 16 36 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 38 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.17 3.41 4.72 -55.16 -0.26 3.15 16 40 H 0.19 2.74 7.02 -52.49 -0.37 2.37 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.39 1.73 9.12 45.56 0.42 2.14 16 LS Contribution 358.06 15.07 5.40 5.40 Total: -1.00 -29.01 358.06 -5.99 -35.01 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -4.22 Total: 11.86 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.23 Total: -6.68 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 1.47 Total: -42.01 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.39 Total: -17.20 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.01 -5.99 -35.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603175250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.957 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds