Wall clock time and date at job start Tue Mar 31 2020 18:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.46960 * 2 1 4 4 C 1.50702 * 109.47232 * 119.99838 * 2 1 3 5 5 O 1.21283 * 119.99955 * 97.05741 * 4 2 1 6 6 N 1.34783 * 119.99855 * 277.06123 * 4 2 1 7 7 C 1.46499 * 119.99815 * 7.52424 * 6 4 2 8 8 C 1.50703 * 109.46930 * 92.92160 * 7 6 4 9 9 H 1.07995 * 119.99813 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99511 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00548 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99556 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47262 * 59.99409 * 12 10 8 14 14 H 1.48504 * 109.47161 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47146 * 299.99695 * 12 10 8 16 16 C 1.39923 * 119.99805 * 187.52858 * 6 4 2 17 17 C 1.38877 * 120.06756 * 186.25219 * 16 6 4 18 18 C 1.38107 * 119.92389 * 179.76538 * 17 16 6 19 19 C 1.38280 * 120.07233 * 0.48706 * 18 17 16 20 20 C 1.38275 * 120.14452 * 359.76599 * 19 18 17 21 21 C 1.38111 * 120.06962 * 0.02562 * 20 19 18 22 22 N 1.46504 * 109.47183 * 239.99861 * 2 1 3 23 23 C 1.35312 * 125.86626 * 324.71165 * 22 2 1 24 24 C 1.35352 * 106.17200 * 179.90700 * 23 22 2 25 25 C 1.50701 * 126.74966 * 180.12636 * 24 23 22 26 26 O 1.42898 * 109.47109 * 0.29949 * 25 24 23 27 27 N 1.33770 * 106.49698 * 0.35211 * 24 23 22 28 28 N 1.28628 * 108.88671 * 359.77753 * 27 24 23 29 29 H 1.08998 * 109.47339 * 53.16777 * 1 2 3 30 30 H 1.08998 * 109.47120 * 173.16317 * 1 2 3 31 31 H 1.09000 * 109.47278 * 293.16421 * 1 2 3 32 32 H 1.09004 * 109.46943 * 212.91858 * 7 6 4 33 33 H 1.09000 * 109.47616 * 332.91765 * 7 6 4 34 34 H 0.97003 * 120.00539 * 180.02562 * 11 10 8 35 35 H 1.07996 * 120.03243 * 359.97407 * 17 16 6 36 36 H 1.08003 * 119.96567 * 180.25192 * 18 17 16 37 37 H 1.08012 * 119.92851 * 179.74361 * 19 18 17 38 38 H 1.08008 * 119.97014 * 179.97438 * 20 19 18 39 39 H 1.08003 * 120.04132 * 179.97438 * 21 20 19 40 40 H 1.08001 * 126.91024 * 0.02562 * 23 22 2 41 41 H 1.08997 * 109.46905 * 120.29131 * 25 24 23 42 42 H 1.08995 * 109.47300 * 240.29437 * 25 24 23 43 43 H 0.96695 * 114.00168 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3561 -1.8775 1.1672 6 7 2.1217 -0.0487 2.4013 7 6 1.5788 1.3068 2.5199 8 6 0.1618 1.2377 3.0284 9 1 -0.2893 0.2798 3.2415 10 6 -0.5589 2.3972 3.2206 11 7 -0.0098 3.5636 2.9606 12 14 -2.3151 2.3116 3.8516 13 1 -2.3312 1.6542 5.1831 14 1 -2.8655 3.6856 3.9717 15 1 -3.1445 1.5269 2.9021 16 6 2.7330 -0.6565 3.5035 17 6 2.7117 -0.0314 4.7434 18 6 3.3118 -0.6362 5.8303 19 6 3.9422 -1.8580 5.6827 20 6 3.9698 -2.4806 4.4484 21 6 3.3678 -1.8831 3.3584 22 7 2.0183 -0.6907 -1.1962 23 6 1.4387 -1.7622 -1.7851 24 6 2.2134 -2.0714 -2.8511 25 6 1.9890 -3.1913 -3.8342 26 8 0.8022 -3.9045 -3.4810 27 7 3.2200 -1.1904 -2.8574 28 7 3.0755 -0.3860 -1.8642 29 1 -0.3634 0.6160 -0.8225 30 1 -0.3633 -1.0203 -0.1223 31 1 -0.3634 0.4042 0.9448 32 1 2.1874 1.8822 3.2175 33 1 1.5910 1.7900 1.5429 34 1 -0.5167 4.3794 3.0962 35 1 2.2234 0.9250 4.8582 36 1 3.2921 -0.1525 6.7958 37 1 4.4145 -2.3270 6.5335 38 1 4.4633 -3.4347 4.3362 39 1 3.3900 -2.3696 2.3944 40 1 0.5380 -2.2676 -1.4693 41 1 1.8797 -2.7781 -4.8368 42 1 2.8412 -3.8705 -3.8120 43 1 0.5952 -4.6410 -4.0724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603175250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:58 Heat of formation + Delta-G solvation = 45.672127 kcal Electronic energy + Delta-G solvation = -28567.419454 eV Core-core repulsion = 24615.287831 eV Total energy + Delta-G solvation = -3952.131623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.44959 -42.00213 -39.49068 -37.84376 -37.18778 -36.41954 -34.69338 -32.84961 -32.08437 -31.79245 -30.58515 -29.29319 -27.79463 -26.12133 -25.35843 -24.40205 -23.29436 -22.49208 -22.34422 -20.78195 -18.96938 -18.65029 -18.46305 -18.12215 -17.90894 -17.41679 -16.83389 -16.60257 -16.24368 -15.87491 -15.73017 -15.44393 -15.25625 -15.05125 -14.74735 -14.54658 -14.37559 -14.00134 -13.79157 -13.45781 -13.31496 -13.28309 -12.96873 -12.79858 -12.70563 -12.62194 -12.48424 -12.24164 -12.06124 -11.98938 -11.88116 -11.66373 -11.12719 -11.00534 -10.67523 -10.44791 -10.05449 -9.81408 -8.87515 -8.25212 -6.40668 0.25903 0.45852 0.52846 1.03084 1.37390 1.39294 1.43674 1.48320 1.53738 1.94694 2.38255 2.90183 2.98327 3.04492 3.06095 3.29964 3.61354 3.82576 3.95301 4.06064 4.15877 4.18139 4.36080 4.45068 4.48327 4.53045 4.56839 4.58042 4.59147 4.60379 4.78343 4.88223 5.01585 5.03390 5.17953 5.20160 5.33545 5.47289 5.56459 5.62307 5.64548 5.70799 5.88730 6.21381 6.26228 6.65592 6.83055 6.96550 7.29913 7.35821 8.79299 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.009528 B = 0.004605 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.003638 B = 6078.630982 C = 8096.027038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 H 0.138 0.862 4 C 0.508 3.492 5 O -0.544 6.544 6 N -0.529 5.529 7 C 0.236 3.764 8 C -0.541 4.541 9 H 0.057 0.943 10 C 0.038 3.962 11 N -0.910 5.910 12 Si 0.949 3.051 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.265 1.265 16 C 0.137 3.863 17 C -0.156 4.156 18 C -0.101 4.101 19 C -0.144 4.144 20 C -0.106 4.106 21 C -0.190 4.190 22 N -0.275 5.275 23 C -0.001 4.001 24 C -0.048 4.048 25 C 0.177 3.823 26 O -0.584 6.584 27 N -0.281 5.281 28 N -0.117 5.117 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.271 0.729 35 H 0.123 0.877 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.205 0.795 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 -10.692 -4.979 11.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 H 0.155 0.845 4 C 0.296 3.704 5 O -0.424 6.424 6 N -0.248 5.248 7 C 0.116 3.884 8 C -0.579 4.579 9 H 0.075 0.925 10 C -0.165 4.165 11 N -0.547 5.547 12 Si 0.775 3.225 13 H -0.202 1.202 14 H -0.209 1.209 15 H -0.190 1.190 16 C 0.042 3.958 17 C -0.176 4.176 18 C -0.120 4.120 19 C -0.163 4.163 20 C -0.125 4.125 21 C -0.210 4.210 22 N -0.068 5.068 23 C -0.153 4.153 24 C -0.186 4.186 25 C 0.098 3.902 26 O -0.393 6.393 27 N -0.149 5.149 28 N -0.095 5.095 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.166 0.834 37 H 0.171 0.829 38 H 0.161 0.839 39 H 0.168 0.832 40 H 0.222 0.778 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 2.187 -9.611 -4.706 10.922 hybrid contribution -1.713 -0.374 0.249 1.771 sum 0.474 -9.985 -4.457 10.945 Atomic orbital electron populations 1.22359 0.87102 1.04929 1.07654 1.21608 0.99467 0.96967 0.78754 0.84492 1.20669 0.78051 0.86556 0.85099 1.90418 1.50006 1.16778 1.85229 1.45833 1.52420 1.18103 1.08458 1.19583 0.94169 0.75841 0.98758 1.21279 0.97447 0.93020 1.46139 0.92484 1.25475 1.01625 0.94621 0.94740 1.69974 1.38880 0.98228 1.47643 0.85726 0.80283 0.77298 0.79198 1.20216 1.20918 1.18976 1.18284 0.95689 0.94171 0.87609 1.21138 1.03132 1.01758 0.91573 1.21270 0.96646 0.95747 0.98291 1.21439 1.01060 0.95680 0.98081 1.21350 0.98426 1.00304 0.92384 1.22348 1.00449 0.95632 1.02553 1.47158 1.17386 1.21954 1.20255 1.23572 1.03658 0.91932 0.96089 1.22327 0.94533 1.01444 1.00292 1.19897 0.88371 0.88799 0.93183 1.86342 1.43673 1.50263 1.59047 1.74864 1.21735 1.04311 1.13996 1.78254 1.05120 1.22527 1.03615 0.88649 0.90069 0.86952 0.94840 0.93616 0.91976 0.85915 0.83396 0.82888 0.83920 0.83246 0.77823 0.89553 0.90331 0.73735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 8.89 71.98 0.64 -4.40 16 2 C 0.14 4.86 2.83 44.24 0.13 4.98 16 3 H 0.14 4.89 6.42 -2.39 -0.02 4.88 16 4 C 0.51 20.59 6.79 87.66 0.60 21.18 16 5 O -0.54 -23.63 12.86 -3.04 -0.04 -23.67 16 6 N -0.53 -22.18 2.68 -635.29 -1.70 -23.88 16 7 C 0.24 10.40 4.14 85.63 0.35 10.75 16 8 C -0.54 -25.06 6.78 25.60 0.17 -24.89 16 9 H 0.06 2.73 7.81 -2.91 -0.02 2.71 16 10 C 0.04 1.79 5.46 84.66 0.46 2.25 16 11 N -0.91 -45.53 13.29 21.45 0.28 -45.24 16 12 Si 0.95 38.16 29.54 68.60 2.03 40.19 16 13 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 14 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 15 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 16 C 0.14 5.60 6.49 38.15 0.25 5.85 16 17 C -0.16 -5.90 9.10 22.39 0.20 -5.70 16 18 C -0.10 -3.06 10.04 22.25 0.22 -2.84 16 19 C -0.14 -3.91 10.04 22.29 0.22 -3.68 16 20 C -0.11 -3.26 10.04 22.25 0.22 -3.04 16 21 C -0.19 -7.31 8.98 22.39 0.20 -7.11 16 22 N -0.27 -9.80 2.94 -330.73 -0.97 -10.77 16 23 C 0.00 -0.04 9.70 83.49 0.81 0.77 16 24 C -0.05 -1.45 7.22 41.60 0.30 -1.15 16 25 C 0.18 3.48 7.67 71.24 0.55 4.03 16 26 O -0.58 -10.17 13.04 -148.98 -1.94 -12.12 16 27 N -0.28 -10.18 12.41 -48.60 -0.60 -10.79 16 28 N -0.12 -4.56 13.16 37.02 0.49 -4.07 16 29 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.08 2.27 6.83 -2.39 -0.02 2.25 16 31 H 0.11 4.03 5.22 -2.39 -0.01 4.02 16 32 H 0.03 1.59 6.66 -2.39 -0.02 1.57 16 33 H 0.05 2.02 5.76 -2.39 -0.01 2.01 16 34 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 35 H 0.12 5.03 6.20 -2.91 -0.02 5.01 16 36 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 37 H 0.15 2.95 8.06 -2.90 -0.02 2.93 16 38 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 39 H 0.15 6.29 4.72 -45.35 -0.21 6.08 16 40 H 0.20 5.67 7.02 -2.91 -0.02 5.65 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.41 2.46 9.12 -74.06 -0.68 1.78 16 Total: -1.00 -63.75 358.06 3.06 -60.68 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: 0.20 Total: 32.65 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 5.33 Total: -2.98 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -2.51 Total: -94.75 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -1.98 Total: -35.79 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -63.75 3.06 -60.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603175250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.356 kcal (2) G-P(sol) polarization free energy of solvation -63.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds