Wall clock time and date at job start Tue Mar 31 2020 17:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46950 * 2 1 4 4 C 1.50695 * 109.47518 * 239.99752 * 2 1 3 5 5 H 1.07997 * 120.00446 * 245.58664 * 4 2 1 6 6 C 1.37883 * 119.99801 * 65.57983 * 4 2 1 7 7 N 1.31516 * 120.00014 * 198.29137 * 6 4 2 8 8 Si 1.86803 * 120.00001 * 18.57489 * 6 4 2 9 9 H 1.48502 * 109.46996 * 179.72365 * 8 6 4 10 10 H 1.48498 * 109.46761 * 299.71964 * 8 6 4 11 11 H 1.48496 * 109.47235 * 59.72150 * 8 6 4 12 12 N 1.46900 * 109.47259 * 119.99389 * 2 1 3 13 13 C 1.46903 * 110.99472 * 58.95482 * 12 2 1 14 14 C 1.46897 * 111.00093 * 295.00639 * 12 2 1 15 15 C 1.50699 * 109.46951 * 189.99667 * 14 12 2 16 16 O 1.21280 * 120.00140 * 0.02562 * 15 14 12 17 17 N 1.34780 * 120.00125 * 179.97438 * 15 14 12 18 18 N 1.40098 * 120.00206 * 180.02562 * 17 15 14 19 19 C 1.34780 * 120.00206 * 180.02562 * 18 17 15 20 20 O 1.21540 * 119.99504 * 359.97438 * 19 18 17 21 21 C 1.47911 * 119.99838 * 179.97438 * 19 18 17 22 22 C 1.39623 * 119.99661 * 359.72178 * 21 19 18 23 23 C 1.37726 * 120.00040 * 179.76642 * 22 21 19 24 24 C 1.39670 * 119.99960 * 0.50945 * 23 22 21 25 25 C 1.43202 * 120.00745 * 179.72353 * 24 23 22 26 26 N 9.85030 * 167.20446 * 202.61446 * 15 1 2 27 27 C 1.39677 * 119.98541 * 359.74371 * 24 23 22 28 28 C 1.37722 * 119.99531 * 0.02562 * 27 24 23 29 29 H 1.08997 * 109.47167 * 174.31792 * 1 2 3 30 30 H 1.09000 * 109.47599 * 294.31912 * 1 2 3 31 31 H 1.09005 * 109.47053 * 54.32166 * 1 2 3 32 32 H 0.97002 * 119.99810 * 355.24611 * 7 6 4 33 33 H 1.08998 * 109.47081 * 60.00563 * 13 12 2 34 34 H 1.09008 * 109.46951 * 179.97438 * 13 12 2 35 35 H 1.08997 * 109.47794 * 299.99940 * 13 12 2 36 36 H 1.08997 * 109.46906 * 309.99690 * 14 12 2 37 37 H 1.08997 * 109.47330 * 69.99922 * 14 12 2 38 38 H 0.96999 * 120.00096 * 359.97438 * 17 15 14 39 39 H 0.97006 * 120.00076 * 359.97438 * 18 17 15 40 40 H 1.07996 * 119.99439 * 359.97438 * 22 21 19 41 41 H 1.08006 * 119.99738 * 180.23417 * 23 22 21 42 42 H 1.08002 * 119.99873 * 179.97438 * 27 24 23 43 43 H 1.08000 * 119.99738 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5769 -1.6381 -1.1338 6 6 1.7968 -0.1761 -2.4794 7 7 1.9005 -0.9341 -3.5491 8 14 1.3379 1.6264 -2.6529 9 1 1.1452 1.9521 -4.0889 10 1 0.0782 1.8899 -1.9122 11 1 2.4256 2.4699 -2.0956 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6486 0.0393 2.4180 15 6 2.3678 -0.5569 3.6006 16 8 3.1161 -1.4983 3.4436 17 7 2.1801 -0.0433 4.8325 18 7 2.8491 -0.5973 5.9317 19 6 2.6611 -0.0840 7.1637 20 8 1.9115 0.8597 7.3209 21 6 3.3670 -0.6693 8.3243 22 6 4.2236 -1.7571 8.1443 23 6 4.8847 -2.2990 9.2242 24 6 4.6900 -1.7672 10.5010 25 6 5.3727 -2.3344 11.6248 26 7 5.9135 -2.7848 12.5164 27 6 3.8289 -0.6824 10.6814 28 6 3.1717 -0.1377 9.6006 29 1 -0.3633 -1.0226 -0.1017 30 1 -0.3634 0.4232 0.9364 31 1 -0.3633 0.5994 -0.8348 32 1 2.2094 -1.8499 -3.4665 33 1 1.8763 -2.6150 0.3649 34 1 1.9060 -2.5657 2.1437 35 1 0.4384 -2.0742 1.2640 36 1 1.9296 1.0871 2.3124 37 1 0.5721 -0.0344 2.5726 38 1 1.5825 0.7103 4.9579 39 1 3.4471 -1.3507 5.8063 40 1 4.3704 -2.1713 7.1578 41 1 5.5502 -3.1381 9.0844 42 1 3.6779 -0.2712 11.6687 43 1 2.5056 0.7009 9.7402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839505119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:46 Heat of formation + Delta-G solvation = 42.270926 kcal Electronic energy + Delta-G solvation = -26400.217959 eV Core-core repulsion = 22447.938849 eV Total energy + Delta-G solvation = -3952.279110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.03600 -39.93116 -38.94931 -37.09743 -36.89987 -35.50166 -32.98159 -32.68890 -31.88057 -31.14919 -29.71013 -27.63237 -25.56947 -25.03509 -23.92307 -23.35352 -21.91471 -21.15293 -19.66538 -19.26850 -18.41770 -18.05496 -17.33906 -16.61318 -16.11848 -15.95929 -15.51787 -15.15317 -15.08204 -14.81980 -14.57450 -14.45635 -14.33196 -14.00371 -13.71892 -13.68974 -13.37557 -12.91917 -12.85444 -12.80218 -12.60458 -12.00992 -11.83211 -11.64396 -11.56152 -11.38991 -11.00021 -10.87593 -10.71911 -10.45363 -9.97003 -9.81367 -9.78422 -9.74631 -9.71776 -8.96680 -8.60045 -8.17940 -7.44268 -6.47650 -4.05175 -0.30259 0.59140 1.48778 1.82185 2.06056 2.49266 2.74247 3.16661 3.25111 3.33044 3.41215 3.56073 3.58100 4.05007 4.08135 4.18414 4.46478 4.48000 4.66567 4.76663 4.83992 4.89323 5.21649 5.25102 5.36001 5.45550 5.49746 5.54009 5.55518 5.95257 6.06820 6.20516 6.28448 6.31385 6.36743 6.42706 6.56953 6.75270 6.85724 6.93528 7.18510 7.26115 7.54693 7.60228 7.92464 8.18227 8.26250 8.42839 8.96676 9.61859 10.93753 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.031452 B = 0.001894 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.032663 B =14782.011953 C =15307.190063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.188 3.812 3 H 0.033 0.967 4 C -0.587 4.587 5 H 0.065 0.935 6 C 0.030 3.970 7 N -0.905 5.905 8 Si 1.044 2.956 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.282 1.282 12 N -0.506 5.506 13 C 0.031 3.969 14 C 0.042 3.958 15 C 0.518 3.482 16 O -0.514 6.514 17 N -0.532 5.532 18 N -0.513 5.513 19 C 0.555 3.445 20 O -0.533 6.533 21 C -0.095 4.095 22 C -0.086 4.086 23 C -0.074 4.074 24 C -0.001 4.001 25 C 0.250 3.750 26 N -0.405 5.405 27 C -0.076 4.076 28 C -0.056 4.056 29 H 0.051 0.949 30 H 0.022 0.978 31 H 0.060 0.940 32 H 0.268 0.732 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.014 0.986 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.431 0.569 39 H 0.431 0.569 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.962 1.635 26.782 26.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.080 3.920 3 H 0.051 0.949 4 C -0.625 4.625 5 H 0.084 0.916 6 C -0.175 4.175 7 N -0.539 5.539 8 Si 0.873 3.127 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.209 1.209 12 N -0.230 5.230 13 C -0.117 4.117 14 C -0.091 4.091 15 C 0.305 3.695 16 O -0.386 6.386 17 N -0.284 5.284 18 N -0.260 5.260 19 C 0.341 3.659 20 O -0.409 6.409 21 C -0.101 4.101 22 C -0.105 4.105 23 C -0.094 4.094 24 C -0.005 4.005 25 C -0.066 4.066 26 N -0.080 5.080 27 C -0.097 4.097 28 C -0.075 4.075 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.033 0.967 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.273 0.727 39 H 0.275 0.725 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.904 2.031 26.945 27.089 hybrid contribution -0.601 -1.007 0.810 1.426 sum 1.303 1.024 27.755 27.805 Atomic orbital electron populations 1.22918 1.01199 1.01483 0.99273 1.19717 0.89276 0.94768 0.88210 0.94884 1.21918 1.40085 1.10423 0.90087 0.91646 1.25687 0.94776 1.05027 0.92053 1.70861 1.42095 1.09470 1.31519 0.84066 0.76878 0.75623 0.76118 1.21159 1.20237 1.20865 1.62030 1.59320 1.02195 0.99456 1.22391 0.96336 0.90195 1.02819 1.21925 0.97588 0.99941 0.89670 1.21461 0.82541 0.83714 0.81815 1.90688 1.36532 1.27392 1.83973 1.45261 1.47267 1.36516 0.99344 1.44677 1.45866 1.35213 1.00206 1.18265 0.82521 0.83640 0.81445 1.90824 1.37682 1.27723 1.84684 1.19891 0.99117 0.97551 0.93507 1.21329 0.94846 0.94590 0.99724 1.21151 0.98571 0.99473 0.90225 1.16179 0.98317 0.97269 0.88743 1.25648 0.93835 0.93931 0.93199 1.81304 1.08580 1.08037 1.10078 1.21199 0.94446 0.94005 1.00036 1.21209 0.97396 0.98961 0.89945 0.92960 0.95893 0.92126 0.92201 0.90462 0.92024 0.96742 0.87760 0.91819 0.72675 0.72532 0.84173 0.83878 0.83900 0.83131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.86 8.12 37.15 0.30 -3.56 16 2 C 0.19 4.21 1.93 -68.87 -0.13 4.08 16 3 H 0.03 0.74 6.67 -51.93 -0.35 0.40 16 4 C -0.59 -15.88 8.31 -34.44 -0.29 -16.17 16 5 H 0.07 1.95 6.78 -52.49 -0.36 1.59 16 6 C 0.03 0.83 5.34 -17.82 -0.10 0.74 16 7 N -0.91 -27.12 13.70 55.43 0.76 -26.36 16 8 Si 1.04 24.11 26.46 -169.99 -4.50 19.61 16 9 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -5.78 5.53 56.52 0.31 -5.46 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.51 -10.17 4.48 -237.74 -1.06 -11.23 16 13 C 0.03 0.60 8.53 60.07 0.51 1.11 16 14 C 0.04 0.63 4.90 -4.98 -0.02 0.60 16 15 C 0.52 7.29 7.64 -10.98 -0.08 7.21 16 16 O -0.51 -8.83 14.17 5.56 0.08 -8.75 16 17 N -0.53 -5.83 6.26 31.22 0.20 -5.63 16 18 N -0.51 -4.85 6.21 30.54 0.19 -4.66 16 19 C 0.55 5.03 7.89 -12.30 -0.10 4.94 16 20 O -0.53 -6.29 16.17 5.33 0.09 -6.20 16 21 C -0.10 -0.60 5.88 -104.90 -0.62 -1.21 16 22 C -0.09 -0.39 9.52 -39.25 -0.37 -0.76 16 23 C -0.07 -0.29 9.73 -39.23 -0.38 -0.67 16 24 C 0.00 -0.01 5.73 -106.90 -0.61 -0.62 16 25 C 0.25 1.69 15.32 -22.47 -0.34 1.35 16 26 N -0.41 -3.84 18.54 41.84 0.78 -3.06 16 27 C -0.08 -0.30 9.73 -39.23 -0.38 -0.68 16 28 C -0.06 -0.29 9.58 -39.25 -0.38 -0.66 16 29 H 0.05 1.09 6.71 -51.93 -0.35 0.75 16 30 H 0.02 0.38 6.49 -51.93 -0.34 0.04 16 31 H 0.06 1.28 4.88 -51.93 -0.25 1.03 16 32 H 0.27 8.04 8.73 -40.82 -0.36 7.68 16 33 H 0.08 1.71 6.43 -51.93 -0.33 1.37 16 34 H 0.06 1.14 5.83 -51.92 -0.30 0.84 16 35 H 0.01 0.26 6.41 -51.93 -0.33 -0.07 16 36 H 0.10 1.38 8.00 -51.93 -0.42 0.96 16 37 H 0.06 0.85 6.81 -51.93 -0.35 0.49 16 38 H 0.43 4.09 8.00 -182.60 -1.46 2.63 16 39 H 0.43 3.57 6.02 -182.59 -1.10 2.47 16 40 H 0.14 0.44 6.38 -52.49 -0.34 0.10 16 41 H 0.14 0.33 8.06 -52.48 -0.42 -0.10 16 42 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 43 H 0.15 0.73 7.64 -52.49 -0.40 0.33 16 LS Contribution 361.77 15.07 5.45 5.45 Total: -1.00 -34.61 361.77 -7.78 -42.39 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.76 Total: 2.77 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.99 Total: -4.32 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.85 Total: -50.95 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.16 Total: -14.95 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -4.50 Total: 19.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.61 -7.78 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839505119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.663 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds