Wall clock time and date at job start Tue Mar 31 2020 15:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35962 * 116.99628 * 2 1 4 4 C 1.38012 * 119.99695 * 359.97438 * 3 2 1 5 5 C 1.40095 * 119.83231 * 180.25529 * 4 3 2 6 6 C 1.46734 * 120.08963 * 179.69828 * 5 4 3 7 7 C 1.35614 * 120.00113 * 180.02562 * 6 5 4 8 8 C 1.40770 * 120.00303 * 180.02562 * 7 6 5 9 9 O 1.21471 * 119.99319 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99979 * 180.02562 * 8 7 6 11 11 C 1.52998 * 109.46769 * 274.99338 * 10 8 7 12 12 C 1.53008 * 109.46569 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.46846 * 60.00577 * 12 11 10 14 14 C 1.53000 * 109.47264 * 299.99444 * 13 12 11 15 15 C 1.53001 * 109.46640 * 154.99525 * 10 8 7 16 16 C 1.40160 * 119.82331 * 359.49121 * 5 4 3 17 17 C 1.37587 * 119.98826 * 0.48809 * 16 5 4 18 18 C 1.39103 * 120.17133 * 359.76506 * 17 16 5 19 19 O 1.35582 * 119.91236 * 179.97438 * 18 17 16 20 20 C 1.34743 * 116.99830 * 354.38171 * 19 18 17 21 21 H 1.07994 * 119.99726 * 5.05996 * 20 19 18 22 22 C 1.38741 * 120.00019 * 185.06330 * 20 19 18 23 23 N 1.31496 * 119.99736 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00291 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46889 * 89.99726 * 24 22 20 26 26 H 1.48499 * 109.47360 * 210.00014 * 24 22 20 27 27 H 1.48498 * 109.47017 * 329.99853 * 24 22 20 28 28 H 1.09001 * 109.47397 * 60.00249 * 1 2 3 29 29 H 1.09005 * 109.46937 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47312 * 300.00012 * 1 2 3 31 31 H 1.08002 * 120.08603 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.99882 * 0.02562 * 6 5 4 33 33 H 1.08009 * 120.00003 * 359.97438 * 7 6 5 34 34 H 1.08994 * 109.47153 * 34.99607 * 10 8 7 35 35 H 1.08994 * 109.47503 * 300.00055 * 11 10 8 36 36 H 1.08996 * 109.47040 * 60.01033 * 11 10 8 37 37 H 1.08994 * 109.47206 * 300.00179 * 12 11 10 38 38 H 1.09005 * 109.46663 * 180.02562 * 12 11 10 39 39 H 1.08997 * 109.47063 * 179.97438 * 13 12 11 40 40 H 1.08994 * 109.47543 * 59.99809 * 13 12 11 41 41 H 1.09003 * 109.46858 * 300.00641 * 14 13 12 42 42 H 1.08994 * 109.47675 * 180.02562 * 14 13 12 43 43 H 1.08996 * 109.47408 * 299.99767 * 15 10 8 44 44 H 1.08994 * 109.47280 * 60.00160 * 15 10 8 45 45 H 1.08000 * 120.00697 * 180.23036 * 16 5 4 46 46 H 1.07997 * 119.91236 * 179.74416 * 17 16 5 47 47 H 0.97002 * 119.99978 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2115 0.0000 4 6 1.2943 2.3688 -0.0005 5 6 1.9338 3.6153 -0.0059 6 6 1.1400 4.8494 -0.0132 7 6 1.7610 6.0550 -0.0190 8 6 0.9995 7.2390 -0.0254 9 8 -0.2138 7.1806 -0.0263 10 6 1.6896 8.5787 -0.0324 11 6 2.0344 8.9821 1.4026 12 6 2.7344 10.3426 1.3955 13 6 1.8053 11.3910 0.7803 14 6 1.4604 10.9875 -0.6547 15 6 0.7609 9.6273 -0.6479 16 6 3.3339 3.6805 0.0000 17 6 4.0762 2.5220 0.0010 18 6 3.4409 1.2846 0.0010 19 8 4.1776 0.1463 0.0014 20 6 5.5130 0.2820 -0.1157 21 1 5.9573 1.2663 -0.1221 22 6 6.3174 -0.8429 -0.2281 23 7 5.7764 -2.0414 -0.2198 24 14 8.1687 -0.6549 -0.3912 25 1 8.7869 -0.6529 0.9590 26 1 8.7133 -1.7867 -1.1834 27 1 8.4776 0.6245 -1.0789 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2157 2.3138 -0.0014 32 1 0.0613 4.7975 -0.0140 33 1 2.8398 6.1069 -0.0178 34 1 2.6044 8.5131 -0.6212 35 1 1.1195 9.0477 1.9914 36 1 2.6960 8.2350 1.8410 37 1 3.6493 10.2774 0.8065 38 1 2.9805 10.6299 2.4178 39 1 2.3038 12.3603 0.7756 40 1 0.8905 11.4562 1.3692 41 1 2.3753 10.9224 -1.2437 42 1 0.7989 11.7346 -1.0932 43 1 0.5152 9.3399 -1.6702 44 1 -0.1539 9.6930 -0.0591 45 1 3.8300 4.6398 -0.0004 46 1 5.1550 2.5737 0.0014 47 1 6.3387 -2.8279 -0.2987 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007905607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:48 Heat of formation + Delta-G solvation = -82.430689 kcal Electronic energy + Delta-G solvation = -27053.595807 eV Core-core repulsion = 23167.156821 eV Total energy + Delta-G solvation = -3886.438986 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.166 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.09847 -39.70607 -37.75017 -37.64748 -36.53724 -33.13982 -32.37167 -31.38934 -30.92868 -29.80381 -28.79666 -26.74323 -25.74399 -24.61893 -22.84276 -22.52638 -21.79660 -20.63616 -19.68846 -18.65690 -18.26332 -17.74381 -16.36604 -16.27954 -15.62798 -15.27391 -15.25707 -14.75805 -14.66258 -14.58729 -14.20290 -14.04346 -13.93407 -13.80092 -13.66316 -13.50180 -12.90041 -12.51065 -12.40975 -12.26275 -12.11862 -11.84359 -11.74567 -11.52004 -11.39949 -11.31212 -11.15893 -11.06786 -10.84699 -10.82483 -10.73845 -10.61487 -10.55281 -10.28086 -9.66318 -9.43385 -9.29153 -8.89574 -8.04607 -6.97215 -6.69689 -4.19250 0.73616 2.06503 2.30382 3.00555 3.01563 3.07113 3.34717 3.77290 3.88998 4.23399 4.40043 4.50998 4.57722 4.79555 4.83355 4.94206 5.01759 5.06588 5.19213 5.25071 5.27839 5.29480 5.33674 5.43196 5.46403 5.50310 5.53645 5.59949 5.66178 5.78689 5.80816 5.84057 5.87788 5.91359 5.95502 5.97801 6.05700 6.10585 6.15371 6.25432 6.39437 6.46251 6.56100 6.81741 6.95733 7.02446 7.20801 7.41086 7.71020 7.88238 8.02157 8.73059 9.41326 10.45676 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013839 B = 0.002405 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.794169 B =11637.575300 C =13379.495332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.050 3.950 4 C -0.133 4.133 5 C -0.178 4.178 6 C 0.053 3.947 7 C -0.315 4.315 8 C 0.393 3.607 9 O -0.489 6.489 10 C -0.130 4.130 11 C -0.105 4.105 12 C -0.118 4.118 13 C -0.121 4.121 14 C -0.119 4.119 15 C -0.106 4.106 16 C -0.051 4.051 17 C -0.228 4.228 18 C 0.151 3.849 19 O -0.143 6.143 20 C -0.390 4.390 21 H 0.099 0.901 22 C 0.042 3.958 23 N -0.841 5.841 24 Si 0.946 3.054 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.264 1.264 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.118 0.882 46 H 0.138 0.862 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.609 18.172 0.825 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.005 3.995 4 C -0.153 4.153 5 C -0.179 4.179 6 C 0.034 3.966 7 C -0.334 4.334 8 C 0.277 3.723 9 O -0.371 6.371 10 C -0.149 4.149 11 C -0.143 4.143 12 C -0.155 4.155 13 C -0.158 4.158 14 C -0.157 4.157 15 C -0.143 4.143 16 C -0.069 4.069 17 C -0.247 4.247 18 C 0.093 3.907 19 O -0.043 6.043 20 C -0.465 4.465 21 H 0.116 0.884 22 C -0.166 4.166 23 N -0.472 5.472 24 Si 0.770 3.230 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.188 1.188 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.136 0.864 46 H 0.156 0.844 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.080 17.400 0.823 18.450 hybrid contribution 0.828 0.195 -0.098 0.857 sum -5.252 17.595 0.724 18.377 Atomic orbital electron populations 1.22921 0.80125 1.03121 1.00419 1.86236 1.19609 1.26154 1.89724 1.18035 0.89361 0.84640 1.07419 1.20911 0.98589 0.90951 1.04838 1.18222 0.92904 0.91489 1.15306 1.22611 0.99045 0.91501 0.83426 1.22118 1.01288 0.93408 1.16615 1.20779 0.88820 0.90916 0.71743 1.90521 1.16648 1.90295 1.39615 1.21639 1.00248 0.94569 0.98471 1.21406 1.01019 0.97220 0.94638 1.21527 0.98530 0.94582 1.00864 1.21552 0.99701 0.98231 0.96357 1.21534 1.00489 0.96844 0.96796 1.21394 0.98422 0.93575 1.00944 1.20994 0.92477 0.97448 0.96002 1.20833 1.00761 0.90712 1.12431 1.18919 0.88259 0.87602 0.95903 1.83968 1.19825 1.26033 1.74436 1.21574 0.78304 0.95194 1.51428 0.88351 1.25456 1.01073 0.94106 0.95955 1.70036 1.36850 0.97906 1.42410 0.85624 0.79611 0.78811 0.78959 1.19539 1.19971 1.18823 0.93425 0.88916 0.93449 0.85848 0.86094 0.85696 0.89065 0.91671 0.91189 0.91761 0.91815 0.92167 0.92018 0.91989 0.92017 0.91985 0.91167 0.86412 0.84430 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.30 -6.37 10.28 -34.23 -0.35 -6.73 16 3 C 0.05 1.07 6.70 -39.13 -0.26 0.81 16 4 C -0.13 -2.38 8.78 -38.97 -0.34 -2.72 16 5 C -0.18 -3.05 5.87 -105.05 -0.62 -3.66 16 6 C 0.05 0.80 9.41 -37.09 -0.35 0.45 16 7 C -0.32 -4.35 9.08 -39.56 -0.36 -4.71 16 8 C 0.39 5.36 6.00 -33.35 -0.20 5.16 16 9 O -0.49 -8.06 15.84 5.39 0.09 -7.97 16 10 C -0.13 -1.38 2.40 -91.77 -0.22 -1.60 16 11 C -0.11 -1.00 5.19 -26.73 -0.14 -1.14 16 12 C -0.12 -0.92 5.92 -26.73 -0.16 -1.07 16 13 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 14 C -0.12 -0.96 5.92 -26.76 -0.16 -1.12 16 15 C -0.11 -1.08 4.73 -26.76 -0.13 -1.20 16 16 C -0.05 -0.89 9.40 -39.10 -0.37 -1.25 16 17 C -0.23 -4.63 9.14 -39.50 -0.36 -5.00 16 18 C 0.15 3.54 6.67 -38.73 -0.26 3.28 16 19 O -0.14 -3.93 9.52 -13.80 -0.13 -4.06 16 20 C -0.39 -10.26 9.48 30.92 0.29 -9.97 16 21 H 0.10 2.34 5.18 -52.49 -0.27 2.07 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 23 N -0.84 -23.47 13.67 55.48 0.76 -22.72 16 24 Si 0.95 19.15 29.55 -169.99 -5.02 14.13 16 25 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 26 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 27 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 28 H 0.05 0.61 7.66 -51.93 -0.40 0.22 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 31 H 0.12 1.84 6.28 -52.49 -0.33 1.51 16 32 H 0.12 1.78 7.45 -52.49 -0.39 1.39 16 33 H 0.13 1.54 6.07 -52.48 -0.32 1.23 16 34 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.80 7.87 -51.93 -0.41 0.39 16 45 H 0.12 1.70 6.15 -52.49 -0.32 1.37 16 46 H 0.14 2.71 5.61 -52.49 -0.29 2.42 16 47 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 383.88 15.07 5.78 5.78 Total: -1.00 -30.46 383.88 -8.68 -39.14 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.92 Total: 4.83 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -2.89 Total: -22.40 kcal Atomic # 7 Polarization: -23.47 SS G_CDS: 0.76 Total: -22.72 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.40 Total: -18.76 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.46 -8.68 -39.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007905607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.288 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds