Wall clock time and date at job start Tue Mar 31 2020 16:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86808 * 120.00141 * 2 1 4 4 H 1.48498 * 109.47495 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47030 * 300.00693 * 3 2 1 6 6 H 1.48498 * 109.46643 * 60.00301 * 3 2 1 7 7 C 1.38813 * 120.00659 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00622 * 161.97543 * 7 2 1 9 9 N 1.36937 * 119.99405 * 341.98629 * 7 2 1 10 10 C 1.46930 * 120.63179 * 330.33294 * 9 7 2 11 11 C 1.53198 * 108.89309 * 233.56226 * 10 9 7 12 12 C 1.53079 * 109.29310 * 305.57513 * 11 10 9 13 13 C 1.52999 * 109.44976 * 181.24272 * 12 11 10 14 14 N 1.46496 * 109.47005 * 64.79239 * 13 12 11 15 15 C 1.30758 * 120.00042 * 113.50652 * 14 13 12 16 16 N 1.38396 * 121.44188 * 353.96470 * 15 14 13 17 17 H 0.97000 * 119.95398 * 359.97438 * 16 15 14 18 18 C 1.36071 * 120.09328 * 179.97438 * 16 15 14 19 19 N 1.29674 * 123.36192 * 0.02600 * 18 16 15 20 20 C 1.35892 * 122.15222 * 0.02562 * 19 18 16 21 21 C 1.39540 * 121.42019 * 179.97438 * 20 19 18 22 22 C 1.37822 * 119.79121 * 180.02562 * 21 20 19 23 23 C 1.38650 * 120.81642 * 359.97438 * 22 21 20 24 24 C 1.38251 * 120.45377 * 0.02562 * 23 22 21 25 25 F 1.35096 * 120.25966 * 179.97438 * 24 23 22 26 26 C 1.39295 * 119.47861 * 359.74954 * 24 23 22 27 27 C 1.53043 * 109.65817 * 61.15214 * 12 11 10 28 28 C 1.46928 * 120.63085 * 150.35509 * 9 7 2 29 29 H 0.96996 * 120.00412 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.58592 * 353.41570 * 10 9 7 31 31 H 1.09002 * 109.58811 * 113.70414 * 10 9 7 32 32 H 1.08991 * 109.49656 * 65.38463 * 11 10 9 33 33 H 1.08997 * 109.49336 * 185.48681 * 11 10 9 34 34 H 1.08997 * 109.33478 * 301.13579 * 12 11 10 35 35 H 1.09001 * 109.46844 * 184.79344 * 13 12 11 36 36 H 1.08998 * 109.47089 * 304.78548 * 13 12 11 37 37 H 1.07994 * 118.32019 * 180.02562 * 18 16 15 38 38 H 1.07996 * 120.10353 * 0.04637 * 21 20 19 39 39 H 1.08001 * 119.59429 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.77920 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.49812 * 178.74441 * 27 12 11 42 42 H 1.09011 * 109.49417 * 58.65098 * 27 12 11 43 43 H 1.09003 * 109.58762 * 246.15626 * 28 9 7 44 44 H 1.09000 * 109.59036 * 6.44119 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0505 -1.2249 -0.2899 9 7 1.3760 -2.3591 0.3657 10 6 0.2687 -2.3325 1.3311 11 6 0.5745 -3.3174 2.4640 12 6 0.8611 -4.6987 1.8697 13 6 1.1366 -5.6924 2.9999 14 7 -0.0725 -5.8575 3.8105 15 6 -0.6982 -7.0056 3.8250 16 7 -0.3185 -8.0453 2.9942 17 1 0.4265 -7.9301 2.3838 18 6 -0.9888 -9.2288 3.0324 19 7 -1.9930 -9.4545 3.8212 20 6 -2.4614 -8.5138 4.6828 21 6 -3.5437 -8.7730 5.5247 22 6 -3.9915 -7.7941 6.3853 23 6 -3.3794 -6.5507 6.4271 24 6 -2.3055 -6.2703 5.6028 25 9 -1.7123 -5.0574 5.6464 26 6 -1.8370 -7.2499 4.7303 27 6 2.0822 -4.6204 0.9505 28 6 1.7900 -3.6508 -0.1989 29 1 -0.4850 0.8400 0.0004 30 1 0.1639 -1.3273 1.7393 31 1 -0.6567 -2.6233 0.8340 32 1 1.4475 -2.9740 3.0188 33 1 -0.2827 -3.3781 3.1345 34 1 -0.0042 -5.0315 1.2964 35 1 1.4238 -6.6546 2.5757 36 1 1.9452 -5.3155 3.6260 37 1 -0.6680 -10.0208 2.3720 38 1 -4.0286 -9.7377 5.5021 39 1 -4.8292 -7.9983 7.0357 40 1 -3.7439 -5.7961 7.1083 41 1 2.2974 -5.6096 0.5463 42 1 2.9422 -4.2638 1.5177 43 1 0.9891 -4.0516 -0.8203 44 1 2.6875 -3.5151 -0.8023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340990708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:26 Heat of formation + Delta-G solvation = 49.321551 kcal Electronic energy + Delta-G solvation = -27886.414129 eV Core-core repulsion = 23946.813547 eV Total energy + Delta-G solvation = -3939.600583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.77194 -41.08319 -38.37533 -37.64793 -35.93696 -33.69876 -32.70366 -31.45236 -30.38184 -29.78884 -29.65626 -26.89892 -24.80816 -24.54563 -23.29210 -22.13309 -21.60037 -20.82142 -19.63758 -19.06161 -18.74644 -17.78840 -16.71021 -16.43348 -15.95487 -15.82683 -15.52624 -14.90341 -14.76428 -14.54530 -14.34311 -14.07950 -13.77952 -13.47806 -13.21165 -13.11509 -12.88894 -12.43957 -12.38702 -12.29342 -11.91918 -11.65647 -11.52870 -11.25608 -10.94798 -10.69337 -10.56173 -10.34189 -10.19329 -10.14344 -9.98252 -9.91433 -9.68025 -9.36075 -9.22931 -8.74052 -8.41848 -7.84379 -6.59574 -5.74271 -3.17550 0.31905 0.61784 1.96510 2.49197 2.57724 3.39755 3.47409 3.49741 3.68676 3.69952 3.82394 4.11279 4.44298 4.53507 4.57675 4.75302 4.95412 4.97704 5.11428 5.27512 5.34365 5.42466 5.48180 5.63271 5.64711 5.75732 5.82695 5.86491 5.88784 6.02512 6.10768 6.16638 6.25125 6.38154 6.51340 6.53546 6.72148 6.73351 6.78095 6.90222 6.99578 7.01853 7.46123 7.64378 7.72371 7.84450 7.85986 8.50938 9.26384 9.90102 10.48501 11.34084 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.002827 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.901726 B = 9900.920658 C =10880.209364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.125 4.125 12 C -0.070 4.070 13 C 0.053 3.947 14 N -0.525 5.525 15 C 0.389 3.611 16 N -0.680 5.680 17 H 0.418 0.582 18 C 0.394 3.606 19 N -0.549 5.549 20 C 0.172 3.828 21 C -0.128 4.128 22 C -0.057 4.057 23 C -0.183 4.183 24 C 0.175 3.825 25 F -0.106 7.106 26 C -0.152 4.152 27 C -0.127 4.127 28 C 0.147 3.853 29 H 0.253 0.747 30 H 0.081 0.919 31 H 0.014 0.986 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.026 0.974 36 H 0.087 0.913 37 H 0.198 0.802 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.045 0.955 42 H 0.060 0.940 43 H 0.013 0.987 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.945 -21.971 10.994 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.081 0.919 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.164 4.164 12 C -0.090 4.090 13 C -0.076 4.076 14 N -0.247 5.247 15 C 0.115 3.885 16 N -0.314 5.314 17 H 0.258 0.742 18 C 0.103 3.897 19 N -0.272 5.272 20 C 0.064 3.936 21 C -0.148 4.148 22 C -0.076 4.076 23 C -0.202 4.202 24 C 0.153 3.847 25 F -0.084 7.084 26 C -0.158 4.158 27 C -0.167 4.167 28 C 0.021 3.979 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.032 0.968 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.105 0.895 37 H 0.214 0.786 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.031 0.969 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.529 -21.481 11.495 24.983 hybrid contribution 1.526 1.236 -0.860 2.144 sum -4.003 -20.245 10.635 23.216 Atomic orbital electron populations 1.70063 1.05318 1.25371 1.53607 1.25076 0.95221 0.98459 1.00782 0.86270 0.79419 0.84099 0.77265 1.20260 1.21758 1.21519 1.19185 0.92791 0.85035 1.41368 0.91856 1.44058 1.39100 1.01560 1.46776 1.20724 0.88889 0.97973 0.87692 1.22101 1.00778 0.94206 0.99347 1.21088 0.98071 0.95913 0.93892 1.22247 0.91971 0.97619 0.95802 1.73097 1.10601 1.15026 1.25926 1.20916 0.93650 0.84060 0.89836 1.44319 1.34457 1.13272 1.39312 0.74151 1.24640 0.86214 0.86627 0.92202 1.68579 1.15337 1.31983 1.11258 1.18416 0.94083 0.87563 0.93558 1.20789 0.96650 1.00695 0.96658 1.21004 0.98276 0.91609 0.96721 1.21185 0.97432 0.99373 1.02243 1.17344 0.91986 0.80614 0.94792 1.91644 1.82065 1.40020 1.94686 1.19062 0.99080 0.96290 1.01390 1.22069 0.97331 0.98717 0.98602 1.20848 0.97437 0.87076 0.92561 0.93726 0.90114 0.96798 0.93024 0.92280 0.92495 0.95589 0.89458 0.78555 0.84170 0.84316 0.84076 0.93640 0.92163 0.96867 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 11.38 55.49 0.63 -26.41 16 2 C 0.00 0.10 4.87 -17.43 -0.08 0.02 16 3 Si 0.90 22.23 29.59 -169.99 -5.03 17.20 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.25 -7.19 9.56 -15.06 -0.14 -7.34 16 8 H 0.06 1.76 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -15.41 2.99 -172.31 -0.51 -15.93 16 10 C 0.17 4.38 5.29 -3.70 -0.02 4.36 16 11 C -0.13 -2.62 5.27 -26.59 -0.14 -2.76 16 12 C -0.07 -1.23 2.35 -90.56 -0.21 -1.45 16 13 C 0.05 0.77 5.67 -4.04 -0.02 0.75 16 14 N -0.53 -8.26 8.41 -58.38 -0.49 -8.75 16 15 C 0.39 5.27 7.68 -153.54 -1.18 4.09 16 16 N -0.68 -6.46 5.29 -11.66 -0.06 -6.52 16 17 H 0.42 3.18 6.44 -40.82 -0.26 2.91 16 18 C 0.39 3.03 12.29 -90.11 -1.11 1.92 16 19 N -0.55 -5.63 10.34 -12.02 -0.12 -5.76 16 20 C 0.17 1.98 6.62 -84.51 -0.56 1.42 16 21 C -0.13 -1.17 10.02 -39.25 -0.39 -1.56 16 22 C -0.06 -0.45 10.00 -39.58 -0.40 -0.84 16 23 C -0.18 -1.80 10.01 -39.42 -0.39 -2.19 16 24 C 0.17 2.31 7.29 -39.18 -0.29 2.03 16 25 F -0.11 -1.68 15.68 2.25 0.04 -1.64 16 26 C -0.15 -2.02 5.90 -104.66 -0.62 -2.63 16 27 C -0.13 -2.20 5.37 -26.61 -0.14 -2.34 16 28 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 29 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.08 2.29 6.22 -51.93 -0.32 1.96 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.25 7.72 -51.93 -0.40 0.85 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.03 0.30 5.64 -51.93 -0.29 0.00 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.20 0.52 8.06 -52.49 -0.42 0.09 16 38 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 43 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -34.65 359.09 -11.76 -46.41 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.89 Total: -0.62 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -5.73 Total: -3.39 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.56 Total: -63.36 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.65 -11.76 -46.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340990708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.730 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds