Wall clock time and date at job start Tue Mar 31 2020 16:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86808 * 120.00141 * 2 1 4 4 H 1.48498 * 109.47495 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47030 * 300.00693 * 3 2 1 6 6 H 1.48498 * 109.46643 * 60.00301 * 3 2 1 7 7 C 1.38813 * 120.00659 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00622 * 161.97543 * 7 2 1 9 9 N 1.36937 * 119.99405 * 341.98629 * 7 2 1 10 10 C 1.46930 * 120.63179 * 330.33294 * 9 7 2 11 11 C 1.53198 * 108.89309 * 233.56226 * 10 9 7 12 12 C 1.53079 * 109.29310 * 305.57513 * 11 10 9 13 13 C 1.52999 * 109.44976 * 181.24272 * 12 11 10 14 14 N 1.46496 * 109.47005 * 64.79239 * 13 12 11 15 15 C 1.30758 * 120.00042 * 113.50652 * 14 13 12 16 16 N 1.38396 * 121.44188 * 353.96470 * 15 14 13 17 17 H 0.97000 * 119.95398 * 359.97438 * 16 15 14 18 18 C 1.36071 * 120.09328 * 179.97438 * 16 15 14 19 19 N 1.29674 * 123.36192 * 0.02600 * 18 16 15 20 20 C 1.35892 * 122.15222 * 0.02562 * 19 18 16 21 21 C 1.39540 * 121.42019 * 179.97438 * 20 19 18 22 22 C 1.37822 * 119.79121 * 180.02562 * 21 20 19 23 23 C 1.38650 * 120.81642 * 359.97438 * 22 21 20 24 24 C 1.38251 * 120.45377 * 0.02562 * 23 22 21 25 25 F 1.35096 * 120.25966 * 179.97438 * 24 23 22 26 26 C 1.39295 * 119.47861 * 359.74954 * 24 23 22 27 27 C 1.53043 * 109.65817 * 61.15214 * 12 11 10 28 28 C 1.46928 * 120.63085 * 150.35509 * 9 7 2 29 29 H 0.96996 * 120.00412 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.58592 * 353.41570 * 10 9 7 31 31 H 1.09002 * 109.58811 * 113.70414 * 10 9 7 32 32 H 1.08991 * 109.49656 * 65.38463 * 11 10 9 33 33 H 1.08997 * 109.49336 * 185.48681 * 11 10 9 34 34 H 1.08997 * 109.33478 * 301.13579 * 12 11 10 35 35 H 1.09001 * 109.46844 * 184.79344 * 13 12 11 36 36 H 1.08998 * 109.47089 * 304.78548 * 13 12 11 37 37 H 1.07994 * 118.32019 * 180.02562 * 18 16 15 38 38 H 1.07996 * 120.10353 * 0.04637 * 21 20 19 39 39 H 1.08001 * 119.59429 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.77920 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.49812 * 178.74441 * 27 12 11 42 42 H 1.09011 * 109.49417 * 58.65098 * 27 12 11 43 43 H 1.09003 * 109.58762 * 246.15626 * 28 9 7 44 44 H 1.09000 * 109.59036 * 6.44119 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0505 -1.2249 -0.2899 9 7 1.3760 -2.3591 0.3657 10 6 0.2687 -2.3325 1.3311 11 6 0.5745 -3.3174 2.4640 12 6 0.8611 -4.6987 1.8697 13 6 1.1366 -5.6924 2.9999 14 7 -0.0725 -5.8575 3.8105 15 6 -0.6982 -7.0056 3.8250 16 7 -0.3185 -8.0453 2.9942 17 1 0.4265 -7.9301 2.3838 18 6 -0.9888 -9.2288 3.0324 19 7 -1.9930 -9.4545 3.8212 20 6 -2.4614 -8.5138 4.6828 21 6 -3.5437 -8.7730 5.5247 22 6 -3.9915 -7.7941 6.3853 23 6 -3.3794 -6.5507 6.4271 24 6 -2.3055 -6.2703 5.6028 25 9 -1.7123 -5.0574 5.6464 26 6 -1.8370 -7.2499 4.7303 27 6 2.0822 -4.6204 0.9505 28 6 1.7900 -3.6508 -0.1989 29 1 -0.4850 0.8400 0.0004 30 1 0.1639 -1.3273 1.7393 31 1 -0.6567 -2.6233 0.8340 32 1 1.4475 -2.9740 3.0188 33 1 -0.2827 -3.3781 3.1345 34 1 -0.0042 -5.0315 1.2964 35 1 1.4238 -6.6546 2.5757 36 1 1.9452 -5.3155 3.6260 37 1 -0.6680 -10.0208 2.3720 38 1 -4.0286 -9.7377 5.5021 39 1 -4.8292 -7.9983 7.0357 40 1 -3.7439 -5.7961 7.1083 41 1 2.2974 -5.6096 0.5463 42 1 2.9422 -4.2638 1.5177 43 1 0.9891 -4.0516 -0.8203 44 1 2.6875 -3.5151 -0.8023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340990708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:26 Heat of formation + Delta-G solvation = 28.902003 kcal Electronic energy + Delta-G solvation = -27887.299587 eV Core-core repulsion = 23946.813547 eV Total energy + Delta-G solvation = -3940.486041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.79737 -41.87561 -39.67813 -38.74544 -37.04475 -35.27783 -33.74029 -32.89654 -31.65309 -31.48979 -30.62467 -28.36651 -26.22004 -25.40149 -24.55539 -23.84484 -22.86316 -22.01540 -20.76425 -20.43474 -19.54416 -18.75234 -18.63039 -17.30288 -16.91716 -16.79929 -16.75743 -16.37707 -15.95062 -15.66524 -15.41566 -15.37397 -15.23341 -14.96678 -14.75845 -14.46453 -14.07519 -13.97148 -13.53656 -13.30870 -13.11121 -13.03506 -12.86036 -12.66303 -12.58240 -12.39848 -12.26489 -11.98308 -11.90528 -11.70894 -11.34315 -11.18177 -11.03015 -10.77229 -10.60300 -10.36381 -9.62972 -8.74967 -8.66874 -7.91325 -5.38661 -0.41329 -0.20683 1.10826 1.42098 1.44072 1.55122 1.74349 1.82001 2.47674 2.82831 2.91392 3.16193 3.23052 3.32513 3.63413 3.68027 3.81909 3.86801 3.96012 4.06142 4.16319 4.26589 4.37349 4.39441 4.49703 4.52660 4.64485 4.70610 4.75879 4.87959 4.91334 4.98895 5.06596 5.13663 5.15603 5.23661 5.27529 5.30751 5.34661 5.41038 5.47212 5.61550 5.67983 5.78283 6.03530 6.35506 6.86025 7.00302 7.10074 7.81742 8.35643 9.15300 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.002827 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.901726 B = 9900.920658 C =10880.209364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.265 4.265 8 H 0.069 0.931 9 N -0.611 5.611 10 C 0.184 3.816 11 C -0.108 4.108 12 C -0.061 4.061 13 C 0.064 3.936 14 N -0.577 5.577 15 C 0.393 3.607 16 N -0.672 5.672 17 H 0.428 0.572 18 C 0.400 3.600 19 N -0.566 5.566 20 C 0.162 3.838 21 C -0.128 4.128 22 C -0.040 4.040 23 C -0.182 4.182 24 C 0.139 3.861 25 F -0.133 7.133 26 C -0.186 4.186 27 C -0.113 4.113 28 C 0.140 3.860 29 H 0.249 0.751 30 H 0.042 0.958 31 H -0.015 1.015 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.252 0.748 38 H 0.164 0.836 39 H 0.181 0.819 40 H 0.158 0.842 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.009 0.991 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.486 -25.241 11.350 28.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.249 4.249 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.395 4.395 8 H 0.086 0.914 9 N -0.335 5.335 10 C 0.058 3.942 11 C -0.147 4.147 12 C -0.080 4.080 13 C -0.065 4.065 14 N -0.301 5.301 15 C 0.120 3.880 16 N -0.306 5.306 17 H 0.270 0.730 18 C 0.111 3.889 19 N -0.288 5.288 20 C 0.053 3.947 21 C -0.148 4.148 22 C -0.060 4.060 23 C -0.202 4.202 24 C 0.117 3.883 25 F -0.111 7.111 26 C -0.192 4.192 27 C -0.153 4.153 28 C 0.015 3.985 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.003 0.997 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.268 0.732 38 H 0.181 0.819 39 H 0.198 0.802 40 H 0.175 0.825 41 H 0.111 0.889 42 H 0.077 0.923 43 H 0.027 0.973 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.042 -24.814 11.831 27.949 hybrid contribution 1.255 2.094 -0.972 2.628 sum -3.787 -22.720 10.859 25.465 Atomic orbital electron populations 1.70223 1.06964 1.25837 1.55208 1.25915 0.96012 1.01894 1.01062 0.85197 0.78773 0.79628 0.76801 1.18717 1.21626 1.21824 1.19559 0.93185 0.86214 1.40565 0.91374 1.44327 1.38925 1.02840 1.47369 1.20449 0.88052 0.96999 0.88698 1.21837 0.99963 0.95597 0.97350 1.20944 0.97835 0.94313 0.94918 1.22000 0.91840 0.98214 0.94454 1.73117 1.11940 1.16856 1.28141 1.21082 0.93041 0.84406 0.89509 1.44332 1.34724 1.12979 1.38596 0.72956 1.25698 0.84852 0.86673 0.91656 1.68642 1.16544 1.31678 1.11922 1.18787 0.94631 0.87069 0.94233 1.21200 0.95795 1.01888 0.95871 1.21469 0.98320 0.90069 0.96098 1.21504 0.96327 1.00753 1.01600 1.17843 0.93655 0.80130 0.96714 1.91567 1.82856 1.41627 1.95076 1.19338 1.00108 0.97388 1.02399 1.21922 0.96782 0.99806 0.96748 1.21080 0.97252 0.85952 0.94260 0.94178 0.93983 0.99693 0.93719 0.93171 0.93622 0.91879 0.90224 0.73215 0.81856 0.80201 0.82451 0.88920 0.92277 0.97332 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.77 11.38 21.65 0.25 -58.52 16 2 C -0.05 -3.14 4.87 84.86 0.41 -2.73 16 3 Si 0.97 46.78 29.59 68.60 2.03 48.81 16 4 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 7 C -0.27 -15.30 9.56 84.03 0.80 -14.50 16 8 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 9 N -0.61 -32.66 2.99 -699.07 -2.09 -34.75 16 10 C 0.18 9.86 5.29 86.36 0.46 10.32 16 11 C -0.11 -4.74 5.27 30.69 0.16 -4.58 16 12 C -0.06 -2.11 2.35 -10.75 -0.03 -2.13 16 13 C 0.06 1.80 5.67 86.38 0.49 2.29 16 14 N -0.58 -18.34 8.41 -338.62 -2.85 -21.18 16 15 C 0.39 10.47 7.68 135.98 1.04 11.51 16 16 N -0.67 -11.15 5.29 -190.81 -1.01 -12.16 16 17 H 0.43 5.07 6.44 -92.71 -0.60 4.48 16 18 C 0.40 4.83 12.29 180.17 2.21 7.04 16 19 N -0.57 -10.13 10.34 -191.94 -1.98 -12.12 16 20 C 0.16 3.47 6.62 39.52 0.26 3.73 16 21 C -0.13 -2.01 10.02 22.49 0.23 -1.78 16 22 C -0.04 -0.53 10.00 22.27 0.22 -0.31 16 23 C -0.18 -3.43 10.01 22.37 0.22 -3.21 16 24 C 0.14 3.78 7.29 22.53 0.16 3.94 16 25 F -0.13 -4.51 15.68 44.97 0.71 -3.80 16 26 C -0.19 -4.92 5.90 -19.89 -0.12 -5.04 16 27 C -0.11 -3.69 5.37 30.67 0.16 -3.53 16 28 C 0.14 5.94 6.52 86.36 0.56 6.51 16 29 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.04 2.54 6.22 -2.39 -0.01 2.53 16 31 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 2.26 7.72 -2.39 -0.02 2.24 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.25 5.64 -2.39 -0.01 1.23 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.25 0.03 8.06 -2.91 -0.02 0.00 16 38 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 39 H 0.18 0.84 8.06 -2.91 -0.02 0.81 16 40 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 Total: -1.00 -81.40 359.09 2.76 -78.65 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.43 Total: 7.54 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 7.27 Total: 7.54 kcal Atomic # 7 Polarization: -131.05 SS G_CDS: -7.68 Total: -138.73 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.71 Total: -3.80 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -81.40 2.76 -78.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340990708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.548 kcal (2) G-P(sol) polarization free energy of solvation -81.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds