Wall clock time and date at job start Tue Mar 31 2020 15:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00052 * 2 1 4 4 Si 1.86302 * 109.46997 * 270.00112 * 3 2 1 5 5 C 1.86297 * 109.47231 * 59.99791 * 4 3 2 6 6 C 1.86292 * 109.47207 * 179.97438 * 4 3 2 7 7 C 1.86300 * 109.47098 * 299.99843 * 4 3 2 8 8 C 1.34776 * 119.99759 * 180.02562 * 2 1 3 9 9 O 1.21285 * 119.99840 * 185.17264 * 8 2 1 10 10 C 1.50705 * 120.00275 * 5.17107 * 8 2 1 11 11 C 1.53005 * 109.46789 * 274.81569 * 10 8 2 12 12 C 1.50698 * 109.46535 * 175.00194 * 11 10 8 13 13 C 1.38361 * 119.84571 * 269.71915 * 12 11 10 14 14 C 1.37949 * 120.15333 * 179.76951 * 13 12 11 15 15 C 1.39630 * 119.84355 * 0.53106 * 14 13 12 16 16 C 1.43196 * 120.15359 * 179.70098 * 15 14 13 17 17 N 9.62719 * 62.68666 * 175.46744 * 2 1 3 18 18 C 1.39634 * 119.69900 * 359.72763 * 15 14 13 19 19 C 1.37945 * 119.84909 * 359.97438 * 18 15 14 20 20 C 1.50696 * 109.46881 * 154.81656 * 10 8 2 21 21 N 1.27943 * 120.00426 * 88.83696 * 20 10 8 22 22 Si 1.86804 * 119.99825 * 268.82829 * 20 10 8 23 23 H 1.48495 * 109.47216 * 4.98805 * 22 20 10 24 24 H 1.48499 * 109.46868 * 124.98668 * 22 20 10 25 25 H 1.48504 * 109.47050 * 244.98483 * 22 20 10 26 26 H 1.08999 * 109.47127 * 264.78843 * 1 2 3 27 27 H 1.08991 * 109.47374 * 24.79291 * 1 2 3 28 28 H 1.09003 * 109.47253 * 144.79553 * 1 2 3 29 29 H 1.08993 * 109.47032 * 29.99591 * 3 2 1 30 30 H 1.08993 * 109.46927 * 150.00050 * 3 2 1 31 31 H 1.09004 * 109.46926 * 60.00014 * 5 4 3 32 32 H 1.09004 * 109.47595 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47520 * 299.99880 * 5 4 3 34 34 H 1.09001 * 109.47318 * 59.99862 * 6 4 3 35 35 H 1.08996 * 109.47430 * 179.97438 * 6 4 3 36 36 H 1.09000 * 109.47534 * 300.00335 * 6 4 3 37 37 H 1.09004 * 109.46889 * 59.99972 * 7 4 3 38 38 H 1.08995 * 109.47361 * 179.97438 * 7 4 3 39 39 H 1.08993 * 109.47309 * 300.00358 * 7 4 3 40 40 H 1.08989 * 109.47174 * 34.81461 * 10 8 2 41 41 H 1.09007 * 109.46847 * 294.99540 * 11 10 8 42 42 H 1.08991 * 109.47480 * 54.99883 * 11 10 8 43 43 H 1.08000 * 119.92252 * 0.02562 * 13 12 11 44 44 H 1.08003 * 120.08070 * 180.25893 * 14 13 12 45 45 H 1.08001 * 120.08038 * 179.97438 * 18 15 14 46 46 H 1.07994 * 119.92570 * 180.02562 * 19 18 15 47 47 H 0.97006 * 119.99639 * 359.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 14 2.5080 1.8065 -1.7565 5 6 0.8801 2.0292 -2.6347 6 6 3.4388 3.4202 -1.7566 7 6 3.5148 0.5081 -2.6347 8 6 2.1388 -1.1672 -0.0005 9 8 3.3480 -1.1694 0.0942 10 6 1.3899 -2.4697 -0.1187 11 6 0.9196 -2.9151 1.2674 12 6 0.0672 -4.1508 1.1355 13 6 -1.3010 -4.0290 0.9698 14 6 -2.0868 -5.1558 0.8436 15 6 -1.4996 -6.4216 0.8945 16 6 -2.3097 -7.5959 0.7706 17 7 -2.9525 -8.5271 0.6760 18 6 -0.1188 -6.5373 1.0673 19 6 0.6558 -5.4020 1.1860 20 6 2.2987 -3.5204 -0.7026 21 7 3.0304 -4.2333 0.0678 22 14 2.3569 -3.7824 -2.5512 23 1 1.5155 -2.7596 -3.2228 24 1 3.7589 -3.6586 -3.0248 25 1 1.8427 -5.1372 -2.8756 26 1 -0.3633 -0.0933 1.0234 27 1 -0.3633 0.9328 -0.4309 28 1 -0.3634 -0.8397 -0.5925 29 1 1.6084 2.0283 0.5137 30 1 3.1499 1.1383 0.5138 31 1 0.2911 2.7889 -2.1208 32 1 1.0617 2.3443 -3.6623 33 1 0.3351 1.0852 -2.6347 34 1 4.3912 3.2904 -1.2426 35 1 3.6208 3.7347 -2.7842 36 1 2.8494 4.1797 -1.2428 37 1 2.9698 -0.4359 -2.6347 38 1 3.6961 0.8225 -3.6625 39 1 4.4672 0.3778 -2.1209 40 1 0.5260 -2.3343 -0.7693 41 1 1.7858 -3.1361 1.8913 42 1 0.3352 -2.1178 1.7264 43 1 -1.7544 -3.0494 0.9351 44 1 -3.1542 -5.0593 0.7101 45 1 0.3417 -7.5133 1.1079 46 1 1.7238 -5.4901 1.3192 47 1 3.0003 -4.0970 1.0278 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911723708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:50 Heat of formation + Delta-G solvation = 9.725023 kcal Electronic energy + Delta-G solvation = -26530.920240 eV Core-core repulsion = 23030.320885 eV Total energy + Delta-G solvation = -3500.599355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.69123 -40.53523 -38.03769 -37.12534 -36.56866 -33.96121 -32.27352 -31.50940 -29.69562 -29.00227 -28.45231 -28.34121 -27.57453 -26.23574 -24.00888 -23.68365 -21.81947 -20.13305 -19.92199 -18.45437 -17.80924 -17.12346 -16.80201 -16.49473 -16.33849 -15.91562 -15.64311 -15.18133 -14.88316 -14.76082 -14.67487 -14.32540 -14.19188 -14.12120 -14.03749 -13.91282 -13.88126 -13.82822 -13.70319 -13.35408 -13.33154 -13.23792 -13.12985 -13.04412 -12.96336 -12.91796 -12.59956 -12.53151 -12.16189 -12.07765 -11.73831 -11.45145 -10.99051 -10.86568 -10.75309 -10.24383 -10.19621 -9.90072 -9.31289 -0.42138 0.16144 0.82858 1.17095 1.35655 1.49402 1.60242 1.68098 1.68756 1.78182 1.82080 1.88800 1.96822 2.17019 2.53620 2.75021 2.82316 3.20225 3.38157 3.63073 3.65547 3.68354 3.75146 3.85904 4.00701 4.11438 4.13410 4.26799 4.31891 4.41522 4.42900 4.54054 4.59872 4.60761 4.65488 4.66202 4.67525 4.77323 4.79138 4.82170 4.90472 4.92821 5.01647 5.15111 5.27980 5.30058 5.36767 5.45207 5.60178 5.61184 6.19308 6.48958 6.85819 7.07300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.596 5.596 3 C -0.179 4.179 4 Si 0.992 3.008 5 C -0.446 4.446 6 C -0.448 4.448 7 C -0.444 4.444 8 C 0.516 3.484 9 O -0.520 6.520 10 C -0.137 4.137 11 C -0.078 4.078 12 C -0.060 4.060 13 C -0.113 4.113 14 C -0.067 4.067 15 C -0.027 4.027 16 C 0.249 3.751 17 N -0.410 5.410 18 C -0.063 4.063 19 C -0.116 4.116 20 C -0.010 4.010 21 N -0.609 5.609 22 Si 1.048 2.952 23 H -0.247 1.247 24 H -0.241 1.241 25 H -0.241 1.241 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.743 6.810 -0.575 7.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.329 5.329 3 C -0.348 4.348 4 Si 1.188 2.812 5 C -0.554 4.554 6 C -0.556 4.556 7 C -0.551 4.551 8 C 0.302 3.698 9 O -0.396 6.396 10 C -0.161 4.161 11 C -0.117 4.117 12 C -0.061 4.061 13 C -0.131 4.131 14 C -0.087 4.087 15 C -0.031 4.031 16 C -0.066 4.066 17 N -0.085 5.085 18 C -0.084 4.084 19 C -0.134 4.134 20 C -0.257 4.257 21 N -0.222 5.222 22 Si 0.862 3.138 23 H -0.170 1.170 24 H -0.164 1.164 25 H -0.164 1.164 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.133 0.867 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.155 0.845 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.359 4.445 -1.607 5.283 hybrid contribution -0.434 1.198 1.605 2.049 sum -2.793 5.643 -0.002 6.296 Atomic orbital electron populations 1.22062 0.79277 1.04165 1.02438 1.47469 1.06859 1.05405 1.73189 1.26567 1.01003 0.87689 1.19529 0.79701 0.67813 0.67398 0.66279 1.26127 1.16434 1.04526 1.08278 1.26075 1.08628 1.16161 1.04736 1.26087 1.09679 1.11660 1.07713 1.20141 0.87923 0.84417 0.77300 1.90744 1.13689 1.86804 1.48352 1.21757 1.00891 0.94249 0.99170 1.20598 0.99855 0.96077 0.95121 1.19948 0.94117 0.94387 0.97651 1.20960 0.92629 0.98897 1.00635 1.21203 1.00533 0.90438 0.96546 1.16043 0.91786 0.87962 1.07268 1.25696 0.93678 0.93176 0.94076 1.81293 1.08613 1.10292 1.08310 1.21220 0.91415 0.99758 0.95974 1.21243 1.00680 0.91360 1.00115 1.31219 0.91580 0.91430 1.11440 1.69284 1.16998 1.24699 1.11254 0.83817 0.82223 0.81277 0.66529 1.16966 1.16417 1.16425 0.92069 0.89878 0.90499 0.89737 0.88754 0.91209 0.90984 0.91180 0.91036 0.90946 0.91186 0.91879 0.91343 0.90692 0.86656 0.89789 0.88845 0.84613 0.84629 0.84654 0.84541 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.35 9.44 59.85 0.56 0.21 16 2 N -0.60 1.44 2.38 -119.17 -0.28 1.16 16 3 C -0.18 0.43 4.65 59.85 0.28 0.71 16 4 Si 0.99 -2.99 12.44 -169.99 -2.12 -5.10 16 5 C -0.45 1.48 8.08 101.05 0.82 2.30 16 6 C -0.45 0.94 8.65 101.05 0.87 1.81 16 7 C -0.44 0.15 8.59 101.05 0.87 1.02 16 8 C 0.52 -0.14 6.30 -10.98 -0.07 -0.21 16 9 O -0.52 -1.81 15.75 5.55 0.09 -1.72 16 10 C -0.14 0.31 1.44 -92.92 -0.13 0.18 16 11 C -0.08 0.27 4.49 -27.88 -0.13 0.14 16 12 C -0.06 0.18 4.85 -104.53 -0.51 -0.32 16 13 C -0.11 0.46 9.68 -39.64 -0.38 0.07 16 14 C -0.07 0.19 9.76 -39.17 -0.38 -0.19 16 15 C -0.03 0.03 5.73 -106.93 -0.61 -0.59 16 16 C 0.25 0.44 15.33 -22.49 -0.34 0.09 16 17 N -0.41 -1.93 18.53 41.82 0.78 -1.15 16 18 C -0.06 0.09 9.76 -39.17 -0.38 -0.29 16 19 C -0.12 0.22 8.58 -39.64 -0.34 -0.12 16 20 C -0.01 0.00 3.29 -13.90 -0.05 -0.04 16 21 N -0.61 -0.55 11.48 56.23 0.65 0.10 16 22 Si 1.05 -0.32 29.90 -169.99 -5.08 -5.40 16 23 H -0.25 0.45 7.11 56.52 0.40 0.85 16 24 H -0.24 -0.35 7.11 56.52 0.40 0.05 16 25 H -0.24 0.03 7.11 56.52 0.40 0.43 16 26 H 0.06 -0.39 7.71 -51.93 -0.40 -0.79 16 27 H 0.08 -0.54 7.17 -51.93 -0.37 -0.91 16 28 H 0.08 -0.55 6.02 -51.93 -0.31 -0.86 16 29 H 0.08 -0.34 7.89 -51.93 -0.41 -0.75 16 30 H 0.09 -0.05 7.18 -51.93 -0.37 -0.42 16 31 H 0.07 -0.27 7.96 -51.93 -0.41 -0.68 16 32 H 0.07 -0.20 7.96 -51.93 -0.41 -0.61 16 33 H 0.07 -0.26 7.61 -51.93 -0.40 -0.65 16 34 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 35 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 36 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 37 H 0.06 0.01 7.77 -51.93 -0.40 -0.39 16 38 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 39 H 0.07 0.08 7.96 -51.93 -0.41 -0.34 16 40 H 0.12 -0.57 5.83 -51.94 -0.30 -0.87 16 41 H 0.08 -0.21 6.37 -51.92 -0.33 -0.54 16 42 H 0.09 -0.46 7.15 -51.93 -0.37 -0.83 16 43 H 0.14 -0.90 8.06 -52.49 -0.42 -1.32 16 44 H 0.14 -0.57 8.06 -52.48 -0.42 -0.99 16 45 H 0.14 -0.31 8.06 -52.49 -0.42 -0.73 16 46 H 0.14 -0.27 5.62 -52.49 -0.30 -0.56 16 47 H 0.33 -0.01 5.59 -40.82 -0.23 -0.24 16 LS Contribution 392.25 15.07 5.91 5.91 Total: 0.00 -7.60 392.25 -7.14 -14.74 By element: Atomic # 1 Polarization: -6.15 SS G_CDS: -7.15 Total: -13.31 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 0.07 Total: 4.77 kcal Atomic # 7 Polarization: -1.04 SS G_CDS: 1.14 Total: 0.10 kcal Atomic # 8 Polarization: -1.81 SS G_CDS: 0.09 Total: -1.72 kcal Atomic # 14 Polarization: -3.30 SS G_CDS: -7.20 Total: -10.50 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -7.60 -7.14 -14.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911723708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.469 kcal (2) G-P(sol) polarization free energy of solvation -7.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds