Wall clock time and date at job start Tue Mar 31 2020 15:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.58638 * 2 1 4 4 C 1.53192 * 109.58535 * 120.44421 * 2 1 3 5 5 C 1.53032 * 109.31068 * 174.43235 * 4 2 1 6 6 C 1.53039 * 109.52947 * 298.61528 * 5 4 2 7 7 H 1.09004 * 109.49658 * 301.38511 * 6 5 4 8 8 N 1.46497 * 109.50089 * 181.32700 * 6 5 4 9 9 C 1.34773 * 120.00415 * 154.99643 * 8 6 5 10 10 O 1.21565 * 120.00212 * 0.02562 * 9 8 6 11 11 C 1.47823 * 120.00327 * 179.97438 * 9 8 6 12 12 C 1.41576 * 120.37318 * 359.97438 * 11 9 8 13 13 C 1.34816 * 120.11794 * 179.97438 * 12 11 9 14 14 N 1.36062 * 120.82568 * 0.02562 * 13 12 11 15 15 N 1.40248 * 133.73561 * 179.97438 * 14 13 12 16 16 N 1.28969 * 107.02547 * 180.02562 * 15 14 13 17 17 N 1.28534 * 110.84311 * 359.97438 * 16 15 14 18 18 C 1.32626 * 110.18527 * 0.02562 * 17 16 15 19 19 C 1.38461 * 120.37375 * 179.72678 * 11 9 8 20 20 C 1.53191 * 109.31527 * 61.37006 * 6 5 4 21 21 N 1.46928 * 108.77531 * 305.36796 * 20 6 5 22 22 C 1.36934 * 120.63027 * 233.58702 * 21 20 6 23 23 H 1.08003 * 119.99783 * 151.55299 * 22 21 20 24 24 C 1.38812 * 119.99803 * 331.54491 * 22 21 20 25 25 N 1.31625 * 119.99629 * 160.53960 * 24 22 21 26 26 Si 1.86800 * 120.00364 * 340.54419 * 24 22 21 27 27 H 1.48496 * 109.47201 * 94.83306 * 26 24 22 28 28 H 1.48496 * 109.46906 * 214.83618 * 26 24 22 29 29 H 1.48500 * 109.46869 * 334.83668 * 26 24 22 30 30 H 1.09000 * 109.47518 * 180.28381 * 1 2 3 31 31 H 1.09004 * 109.47052 * 300.28485 * 1 2 3 32 32 H 1.09002 * 109.47368 * 60.27715 * 1 2 3 33 33 H 1.09006 * 109.50896 * 54.47382 * 4 2 1 34 34 H 1.08997 * 109.48307 * 294.37551 * 4 2 1 35 35 H 1.08999 * 109.46296 * 178.59804 * 5 4 2 36 36 H 1.08998 * 109.46191 * 58.62818 * 5 4 2 37 37 H 0.96998 * 120.00198 * 334.99994 * 8 6 5 38 38 H 1.07999 * 119.94316 * 0.02562 * 12 11 9 39 39 H 1.07996 * 119.59095 * 180.02562 * 13 12 11 40 40 H 1.07990 * 120.51961 * 359.97438 * 19 11 9 41 41 H 1.09000 * 109.58090 * 65.15518 * 20 6 5 42 42 H 1.08997 * 109.58471 * 185.57788 * 20 6 5 43 43 H 0.97002 * 119.99423 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7313 1.2443 5 6 3.5674 -0.8496 1.1689 6 6 3.9568 -1.6657 -0.0657 7 1 3.4987 -2.6531 -0.0085 8 7 5.4141 -1.8053 -0.1200 9 6 5.9675 -2.8473 -0.7714 10 8 5.2574 -3.6712 -1.3145 11 6 7.4380 -2.9880 -0.8267 12 6 8.2726 -2.0323 -0.1984 13 6 9.6130 -2.1659 -0.2516 14 7 10.1839 -3.2136 -0.9056 15 7 11.5104 -3.6112 -1.1279 16 7 11.4677 -4.6976 -1.8216 17 7 10.2523 -5.0368 -2.0659 18 6 9.4154 -4.1604 -1.5269 19 6 8.0145 -4.0585 -1.4890 20 6 3.4649 -0.9453 -1.3251 21 7 2.0224 -0.6981 -1.1955 22 6 1.1536 -1.1100 -2.1704 23 1 0.1333 -1.3560 -1.9156 24 6 1.5842 -1.2111 -3.4862 25 7 0.9107 -1.9478 -4.3442 26 14 3.1195 -0.3020 -4.0391 27 1 4.2905 -1.2112 -3.9548 28 1 2.9466 0.1539 -5.4417 29 1 3.3418 0.8741 -3.1601 30 1 -0.3634 -1.0276 0.0051 31 1 -0.3633 0.5183 0.8875 32 1 -0.3634 0.5095 -0.8925 33 1 1.6031 -1.7274 1.2888 34 1 1.7659 -0.1700 2.1364 35 1 3.9378 -1.3475 2.0650 36 1 4.0059 0.1459 1.0993 37 1 5.9808 -1.1479 0.3130 38 1 7.8346 -1.1953 0.3250 39 1 10.2416 -1.4322 0.2310 40 1 7.3973 -4.8017 -1.9715 41 1 3.9903 0.0037 -1.4318 42 1 3.6517 -1.5690 -2.1992 43 1 1.2118 -2.0188 -5.2635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071735708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:52 Heat of formation + Delta-G solvation = 145.861079 kcal Electronic energy + Delta-G solvation = -28172.165583 eV Core-core repulsion = 24256.671231 eV Total energy + Delta-G solvation = -3915.494353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.76077 -40.43898 -38.82793 -37.89355 -34.94897 -34.36509 -33.01123 -32.63568 -30.97773 -30.84209 -30.74943 -26.81580 -25.58505 -25.16682 -24.69004 -23.23128 -22.88444 -21.46437 -20.82947 -19.58192 -18.97382 -18.37886 -17.41603 -17.25307 -16.64238 -16.01246 -15.67330 -15.46719 -15.05740 -14.75396 -14.65126 -14.03186 -13.92712 -13.78229 -13.57689 -13.44282 -13.16280 -12.87585 -12.55131 -12.40237 -12.25628 -11.92415 -11.80639 -11.59096 -11.43216 -11.36957 -10.91067 -10.83406 -10.60828 -10.47541 -10.36689 -10.26165 -10.01089 -9.80527 -9.47202 -9.14416 -9.04101 -8.60709 -7.00669 -5.96303 -3.34418 -0.34281 -0.04795 1.25992 1.67901 2.20255 2.68224 3.09991 3.29956 3.31597 3.42428 3.46097 3.63580 3.84626 4.11366 4.39587 4.47111 4.50938 4.79721 4.87205 4.97819 5.01885 5.10290 5.17867 5.26918 5.33349 5.41147 5.50032 5.61014 5.78446 5.82360 5.86797 5.98998 6.12013 6.15355 6.25195 6.29720 6.40546 6.44265 6.49888 6.66256 6.91631 7.01519 7.33409 7.92241 7.95936 8.02803 8.33261 8.90040 9.69949 10.04388 11.19112 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.003304 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.192779 B = 8471.967008 C = 9452.167844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.168 3.832 3 H 0.031 0.969 4 C -0.128 4.128 5 C -0.117 4.117 6 C 0.124 3.876 7 H 0.097 0.903 8 N -0.712 5.712 9 C 0.551 3.449 10 O -0.503 6.503 11 C -0.065 4.065 12 C -0.114 4.114 13 C 0.106 3.894 14 N -0.296 5.296 15 N -0.111 5.111 16 N -0.008 5.008 17 N -0.312 5.312 18 C 0.240 3.760 19 C -0.024 4.024 20 C 0.120 3.880 21 N -0.596 5.596 22 C -0.263 4.263 23 H 0.094 0.906 24 C 0.029 3.971 25 N -0.904 5.904 26 Si 0.877 3.123 27 H -0.289 1.289 28 H -0.303 1.303 29 H -0.271 1.271 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.395 0.605 38 H 0.172 0.828 39 H 0.188 0.812 40 H 0.183 0.817 41 H 0.026 0.974 42 H 0.079 0.921 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.598 4.123 14.453 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.062 3.938 3 H 0.048 0.952 4 C -0.168 4.168 5 C -0.155 4.155 6 C 0.019 3.981 7 H 0.115 0.885 8 N -0.364 5.364 9 C 0.335 3.665 10 O -0.377 6.377 11 C -0.077 4.077 12 C -0.137 4.137 13 C -0.021 4.021 14 N -0.076 5.076 15 N -0.094 5.094 16 N -0.001 5.001 17 N -0.172 5.172 18 C -0.014 4.014 19 C -0.048 4.048 20 C -0.007 4.007 21 N -0.320 5.320 22 C -0.391 4.391 23 H 0.111 0.889 24 C -0.170 4.170 25 N -0.546 5.546 26 Si 0.708 3.292 27 H -0.217 1.217 28 H -0.231 1.231 29 H -0.196 1.196 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.229 0.771 38 H 0.189 0.811 39 H 0.205 0.795 40 H 0.200 0.800 41 H 0.043 0.957 42 H 0.097 0.903 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.489 2.830 13.499 20.004 hybrid contribution 0.623 1.383 0.023 1.517 sum 15.112 4.214 13.521 20.711 Atomic orbital electron populations 1.21821 0.95137 1.02043 1.00534 1.20522 0.93844 0.93337 0.86056 0.95173 1.22053 0.93848 1.01893 0.98956 1.21692 0.97866 0.99555 0.96364 1.21957 0.76855 1.01783 0.97537 0.88525 1.46041 1.09094 1.26252 1.54979 1.17775 0.86005 0.82617 0.80127 1.90933 1.61967 1.41424 1.43420 1.20493 0.95290 0.94588 0.97353 1.21223 0.91091 1.00623 1.00794 1.21551 0.94389 0.89863 0.96271 1.49043 1.07565 1.18129 1.32896 1.82800 0.92138 1.12172 1.22262 1.77892 1.13069 1.04022 1.05096 1.75285 0.94454 1.23254 1.24211 1.22774 0.95193 0.88289 0.95180 1.20865 0.88074 0.98796 0.97061 1.21708 0.85816 0.96939 0.96201 1.44365 1.01501 1.65407 1.20752 1.18910 0.95390 1.39163 0.85661 0.88879 1.25289 0.97311 0.98519 0.95898 1.69812 1.41042 1.38841 1.04912 0.87013 0.83954 0.81070 0.77210 1.21660 1.23142 1.19574 0.92305 0.94061 0.91660 0.91456 0.92038 0.92248 0.91998 0.77077 0.81065 0.79492 0.79951 0.95662 0.90307 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 7.94 37.16 0.29 -2.04 16 2 C 0.17 2.95 3.50 -67.60 -0.24 2.71 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -1.77 5.37 -26.61 -0.14 -1.91 16 5 C -0.12 -1.41 5.35 -26.69 -0.14 -1.55 16 6 C 0.12 1.91 2.60 -67.81 -0.18 1.73 16 7 H 0.10 1.76 7.58 -51.93 -0.39 1.37 16 8 N -0.71 -8.31 5.03 -54.64 -0.28 -8.58 16 9 C 0.55 7.40 7.75 -12.34 -0.10 7.31 16 10 O -0.50 -9.33 16.03 5.31 0.09 -9.24 16 11 C -0.07 -0.64 5.90 -104.62 -0.62 -1.26 16 12 C -0.11 -0.64 9.48 -39.52 -0.37 -1.02 16 13 C 0.11 0.64 11.19 -16.89 -0.19 0.45 16 14 N -0.30 -3.08 3.94 -12.43 -0.05 -3.13 16 15 N -0.11 -1.39 13.98 60.35 0.84 -0.55 16 16 N -0.01 -0.11 13.35 60.35 0.81 0.69 16 17 N -0.31 -4.44 12.27 31.04 0.38 -4.06 16 18 C 0.24 2.89 8.02 -156.35 -1.25 1.63 16 19 C -0.02 -0.27 9.70 -38.64 -0.37 -0.64 16 20 C 0.12 2.44 3.76 -3.71 -0.01 2.42 16 21 N -0.60 -13.12 2.76 -164.77 -0.45 -13.57 16 22 C -0.26 -7.00 9.06 -15.06 -0.14 -7.13 16 23 H 0.09 2.61 6.37 -52.48 -0.33 2.27 16 24 C 0.03 0.83 5.24 -17.43 -0.09 0.74 16 25 N -0.90 -27.53 13.97 55.49 0.78 -26.75 16 26 Si 0.88 22.12 24.35 -169.99 -4.14 17.98 16 27 H -0.29 -7.28 6.72 56.52 0.38 -6.90 16 28 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 29 H -0.27 -6.52 6.44 56.52 0.36 -6.15 16 30 H 0.06 1.06 7.45 -51.93 -0.39 0.67 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 1.22 7.61 -51.93 -0.40 0.83 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.39 2.80 6.67 -40.82 -0.27 2.53 16 38 H 0.17 0.31 6.46 -52.49 -0.34 -0.03 16 39 H 0.19 0.39 8.06 -52.49 -0.42 -0.03 16 40 H 0.18 2.03 7.67 -52.49 -0.40 1.63 16 41 H 0.03 0.50 6.95 -51.93 -0.36 0.14 16 42 H 0.08 1.90 4.61 -51.93 -0.24 1.66 16 43 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -35.53 347.43 -5.62 -41.15 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.28 Total: -0.62 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -3.55 Total: 1.45 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 2.03 Total: -55.95 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.53 -5.62 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071735708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.012 kcal (2) G-P(sol) polarization free energy of solvation -35.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds