Wall clock time and date at job start Tue Mar 31 2020 15:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.58638 * 2 1 4 4 C 1.53192 * 109.58535 * 120.44421 * 2 1 3 5 5 C 1.53032 * 109.31068 * 174.43235 * 4 2 1 6 6 C 1.53039 * 109.52947 * 298.61528 * 5 4 2 7 7 H 1.09004 * 109.49658 * 301.38511 * 6 5 4 8 8 N 1.46497 * 109.50089 * 181.32700 * 6 5 4 9 9 C 1.34773 * 120.00415 * 154.99643 * 8 6 5 10 10 O 1.21565 * 120.00212 * 0.02562 * 9 8 6 11 11 C 1.47823 * 120.00327 * 179.97438 * 9 8 6 12 12 C 1.41576 * 120.37318 * 359.97438 * 11 9 8 13 13 C 1.34816 * 120.11794 * 179.97438 * 12 11 9 14 14 N 1.36062 * 120.82568 * 0.02562 * 13 12 11 15 15 N 1.40248 * 133.73561 * 179.97438 * 14 13 12 16 16 N 1.28969 * 107.02547 * 180.02562 * 15 14 13 17 17 N 1.28534 * 110.84311 * 359.97438 * 16 15 14 18 18 C 1.32626 * 110.18527 * 0.02562 * 17 16 15 19 19 C 1.38461 * 120.37375 * 179.72678 * 11 9 8 20 20 C 1.53191 * 109.31527 * 61.37006 * 6 5 4 21 21 N 1.46928 * 108.77531 * 305.36796 * 20 6 5 22 22 C 1.36934 * 120.63027 * 233.58702 * 21 20 6 23 23 H 1.08003 * 119.99783 * 151.55299 * 22 21 20 24 24 C 1.38812 * 119.99803 * 331.54491 * 22 21 20 25 25 N 1.31625 * 119.99629 * 160.53960 * 24 22 21 26 26 Si 1.86800 * 120.00364 * 340.54419 * 24 22 21 27 27 H 1.48496 * 109.47201 * 94.83306 * 26 24 22 28 28 H 1.48496 * 109.46906 * 214.83618 * 26 24 22 29 29 H 1.48500 * 109.46869 * 334.83668 * 26 24 22 30 30 H 1.09000 * 109.47518 * 180.28381 * 1 2 3 31 31 H 1.09004 * 109.47052 * 300.28485 * 1 2 3 32 32 H 1.09002 * 109.47368 * 60.27715 * 1 2 3 33 33 H 1.09006 * 109.50896 * 54.47382 * 4 2 1 34 34 H 1.08997 * 109.48307 * 294.37551 * 4 2 1 35 35 H 1.08999 * 109.46296 * 178.59804 * 5 4 2 36 36 H 1.08998 * 109.46191 * 58.62818 * 5 4 2 37 37 H 0.96998 * 120.00198 * 334.99994 * 8 6 5 38 38 H 1.07999 * 119.94316 * 0.02562 * 12 11 9 39 39 H 1.07996 * 119.59095 * 180.02562 * 13 12 11 40 40 H 1.07990 * 120.51961 * 359.97438 * 19 11 9 41 41 H 1.09000 * 109.58090 * 65.15518 * 20 6 5 42 42 H 1.08997 * 109.58471 * 185.57788 * 20 6 5 43 43 H 0.97002 * 119.99423 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7313 1.2443 5 6 3.5674 -0.8496 1.1689 6 6 3.9568 -1.6657 -0.0657 7 1 3.4987 -2.6531 -0.0085 8 7 5.4141 -1.8053 -0.1200 9 6 5.9675 -2.8473 -0.7714 10 8 5.2574 -3.6712 -1.3145 11 6 7.4380 -2.9880 -0.8267 12 6 8.2726 -2.0323 -0.1984 13 6 9.6130 -2.1659 -0.2516 14 7 10.1839 -3.2136 -0.9056 15 7 11.5104 -3.6112 -1.1279 16 7 11.4677 -4.6976 -1.8216 17 7 10.2523 -5.0368 -2.0659 18 6 9.4154 -4.1604 -1.5269 19 6 8.0145 -4.0585 -1.4890 20 6 3.4649 -0.9453 -1.3251 21 7 2.0224 -0.6981 -1.1955 22 6 1.1536 -1.1100 -2.1704 23 1 0.1333 -1.3560 -1.9156 24 6 1.5842 -1.2111 -3.4862 25 7 0.9107 -1.9478 -4.3442 26 14 3.1195 -0.3020 -4.0391 27 1 4.2905 -1.2112 -3.9548 28 1 2.9466 0.1539 -5.4417 29 1 3.3418 0.8741 -3.1601 30 1 -0.3634 -1.0276 0.0051 31 1 -0.3633 0.5183 0.8875 32 1 -0.3634 0.5095 -0.8925 33 1 1.6031 -1.7274 1.2888 34 1 1.7659 -0.1700 2.1364 35 1 3.9378 -1.3475 2.0650 36 1 4.0059 0.1459 1.0993 37 1 5.9808 -1.1479 0.3130 38 1 7.8346 -1.1953 0.3250 39 1 10.2416 -1.4322 0.2310 40 1 7.3973 -4.8017 -1.9715 41 1 3.9903 0.0037 -1.4318 42 1 3.6517 -1.5690 -2.1992 43 1 1.2118 -2.0188 -5.2635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071735708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:51 Heat of formation + Delta-G solvation = 117.953728 kcal Electronic energy + Delta-G solvation = -28173.375737 eV Core-core repulsion = 24256.671231 eV Total energy + Delta-G solvation = -3916.704506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.62147 -41.50981 -39.88785 -39.09854 -36.26475 -35.23997 -34.66959 -33.59579 -32.55826 -32.06500 -31.69816 -28.09032 -27.07456 -25.98710 -25.95375 -24.40370 -24.02863 -22.58064 -22.03954 -21.03068 -19.90175 -19.26231 -18.47552 -18.27485 -18.11756 -17.32564 -16.90389 -16.43675 -16.30164 -16.07477 -15.85991 -15.29240 -15.18201 -15.01401 -14.67657 -14.45338 -14.39723 -14.19923 -13.80466 -13.72665 -13.39997 -13.17593 -13.01126 -12.81288 -12.68412 -12.50064 -12.44589 -12.33155 -12.05592 -11.74441 -11.65226 -11.47382 -11.38394 -11.28899 -11.16498 -10.76076 -10.25131 -9.84973 -8.84097 -8.13707 -5.44900 -1.15415 -0.79311 0.53783 0.85398 1.26480 1.28499 1.33808 1.43585 1.68009 2.18014 2.42681 2.49532 2.80469 3.06140 3.21196 3.36341 3.42651 3.67081 3.81042 3.92892 4.02318 4.07888 4.14732 4.26611 4.31481 4.42823 4.47586 4.63551 4.64906 4.71327 4.78254 4.87782 4.91339 5.00573 5.04167 5.15177 5.18163 5.22832 5.30362 5.38693 5.54298 5.69701 5.93250 6.21008 6.38258 6.96222 7.04755 7.07047 7.68763 8.05639 9.06025 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.003304 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.192779 B = 8471.967008 C = 9452.167844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.157 3.843 3 H 0.050 0.950 4 C -0.122 4.122 5 C -0.106 4.106 6 C 0.135 3.865 7 H 0.059 0.941 8 N -0.690 5.690 9 C 0.550 3.450 10 O -0.565 6.565 11 C -0.054 4.054 12 C -0.092 4.092 13 C 0.118 3.882 14 N -0.292 5.292 15 N -0.118 5.118 16 N -0.030 5.030 17 N -0.346 5.346 18 C 0.229 3.771 19 C -0.043 4.043 20 C 0.116 3.884 21 N -0.613 5.613 22 C -0.234 4.234 23 H 0.065 0.935 24 C -0.040 4.040 25 N -0.961 5.961 26 Si 0.940 3.060 27 H -0.295 1.295 28 H -0.318 1.318 29 H -0.243 1.243 30 H 0.035 0.965 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.423 0.577 38 H 0.226 0.774 39 H 0.240 0.760 40 H 0.166 0.834 41 H 0.044 0.956 42 H 0.032 0.968 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.951 8.104 18.966 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.053 3.947 3 H 0.068 0.932 4 C -0.162 4.162 5 C -0.144 4.144 6 C 0.029 3.971 7 H 0.078 0.922 8 N -0.343 5.343 9 C 0.335 3.665 10 O -0.443 6.443 11 C -0.066 4.066 12 C -0.115 4.115 13 C -0.008 4.008 14 N -0.072 5.072 15 N -0.101 5.101 16 N -0.023 5.023 17 N -0.208 5.208 18 C -0.024 4.024 19 C -0.067 4.067 20 C -0.011 4.011 21 N -0.339 5.339 22 C -0.364 4.364 23 H 0.082 0.918 24 C -0.234 4.234 25 N -0.608 5.608 26 Si 0.770 3.230 27 H -0.224 1.224 28 H -0.247 1.247 29 H -0.167 1.167 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.264 0.736 38 H 0.243 0.757 39 H 0.256 0.744 40 H 0.184 0.816 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.902 6.883 18.109 25.710 hybrid contribution -0.256 0.211 -1.214 1.258 sum 16.646 7.093 16.895 24.756 Atomic orbital electron populations 1.21781 0.95445 1.00774 1.01180 1.20903 0.93886 0.94290 0.85639 0.93207 1.21976 0.95166 1.00808 0.98202 1.21692 0.96512 1.00809 0.95404 1.21496 0.78598 0.99965 0.97072 0.92223 1.45701 1.07963 1.26361 1.54290 1.18269 0.87225 0.82039 0.78932 1.90927 1.63758 1.43735 1.45892 1.20288 0.93475 0.95256 0.97538 1.21748 0.90296 1.00240 0.99174 1.22611 0.95108 0.88804 0.94297 1.49239 1.06682 1.18648 1.32638 1.82663 0.93134 1.11919 1.22376 1.77845 1.13403 1.04965 1.06102 1.75167 0.94928 1.24924 1.25802 1.22624 0.95167 0.88760 0.95823 1.20723 0.87724 0.99725 0.98578 1.21699 0.85073 0.97272 0.97035 1.44553 1.01814 1.66426 1.21087 1.18902 0.95013 1.35896 0.86578 0.91758 1.25935 1.00718 1.00305 0.96480 1.69963 1.43832 1.41994 1.05040 0.85991 0.80399 0.80378 0.76202 1.22359 1.24720 1.16661 0.94608 0.89818 0.94526 0.93482 0.87936 0.88539 0.88839 0.73639 0.75743 0.74366 0.81632 0.93863 0.94920 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 7.94 71.98 0.57 -3.81 16 2 C 0.16 5.02 3.50 44.98 0.16 5.18 16 3 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 4 C -0.12 -2.81 5.37 30.67 0.16 -2.64 16 5 C -0.11 -1.91 5.35 30.62 0.16 -1.75 16 6 C 0.14 3.76 2.60 45.07 0.12 3.88 16 7 H 0.06 2.15 7.58 -2.38 -0.02 2.13 16 8 N -0.69 -13.17 5.03 -445.06 -2.24 -15.41 16 9 C 0.55 13.81 7.75 86.78 0.67 14.49 16 10 O -0.56 -21.67 16.03 -3.92 -0.06 -21.73 16 11 C -0.05 -0.91 5.90 -19.86 -0.12 -1.03 16 12 C -0.09 -0.49 9.48 22.31 0.21 -0.28 16 13 C 0.12 0.76 11.19 83.25 0.93 1.69 16 14 N -0.29 -5.34 3.94 -193.23 -0.76 -6.10 16 15 N -0.12 -2.80 13.98 37.02 0.52 -2.28 16 16 N -0.03 -0.88 13.35 37.02 0.49 -0.38 16 17 N -0.35 -10.21 12.27 -55.72 -0.68 -10.89 16 18 C 0.23 5.44 8.02 134.05 1.07 6.52 16 19 C -0.04 -0.95 9.70 22.88 0.22 -0.73 16 20 C 0.12 4.46 3.76 86.36 0.32 4.79 16 21 N -0.61 -26.49 2.76 -675.21 -1.86 -28.35 16 22 C -0.23 -12.87 9.06 84.03 0.76 -12.11 16 23 H 0.06 3.83 6.37 -2.91 -0.02 3.81 16 24 C -0.04 -2.40 5.24 84.86 0.45 -1.95 16 25 N -0.96 -62.25 13.97 21.65 0.30 -61.95 16 26 Si 0.94 47.26 24.35 68.60 1.67 48.93 16 27 H -0.30 -14.95 6.72 99.48 0.67 -14.29 16 28 H -0.32 -16.50 7.11 99.48 0.71 -15.79 16 29 H -0.24 -10.89 6.44 99.48 0.64 -10.25 16 30 H 0.03 1.30 7.45 -2.39 -0.02 1.28 16 31 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.04 1.37 7.61 -2.39 -0.02 1.35 16 33 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.42 2.98 6.67 -92.71 -0.62 2.36 16 38 H 0.23 -1.24 6.46 -2.91 -0.02 -1.26 16 39 H 0.24 -0.89 8.06 -2.91 -0.02 -0.91 16 40 H 0.17 4.12 7.67 -2.92 -0.02 4.10 16 41 H 0.04 1.52 6.95 -2.39 -0.02 1.50 16 42 H 0.03 1.58 4.61 -2.39 -0.01 1.57 16 43 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -89.91 347.43 3.42 -86.48 By element: Atomic # 1 Polarization: -0.90 SS G_CDS: 0.35 Total: -0.55 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 5.70 Total: 12.25 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -4.23 Total: -125.38 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.06 Total: -21.73 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.67 Total: 48.93 kcal Total: -89.91 3.42 -86.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071735708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.438 kcal (2) G-P(sol) polarization free energy of solvation -89.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds