Wall clock time and date at job start Tue Mar 31 2020 16:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48500 * 109.47045 * 269.99494 * 3 2 1 5 5 H 1.48495 * 109.46930 * 29.99916 * 3 2 1 6 6 H 1.48507 * 109.47058 * 149.99468 * 3 2 1 7 7 C 1.38956 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99494 * 0.02562 * 7 2 1 9 9 N 1.37088 * 120.00074 * 180.02562 * 7 2 1 10 10 C 1.34782 * 119.99949 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99884 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99871 * 179.97438 * 10 9 7 13 13 N 1.46494 * 109.46993 * 180.02562 * 12 10 9 14 14 C 1.34779 * 120.00419 * 179.97438 * 13 12 10 15 15 O 1.21558 * 119.99317 * 0.02562 * 14 13 12 16 16 C 1.47837 * 120.00431 * 179.97438 * 14 13 12 17 17 C 1.39576 * 120.14533 * 0.25603 * 16 14 13 18 18 C 1.37957 * 119.85539 * 180.25470 * 17 16 14 19 19 C 1.38360 * 120.14382 * 359.46673 * 18 17 16 20 20 C 1.50695 * 119.85723 * 180.27883 * 19 18 17 21 21 C 1.53004 * 109.47453 * 240.00362 * 20 19 18 22 22 C 1.52997 * 109.47113 * 179.97438 * 21 20 19 23 23 C 1.53004 * 109.47060 * 60.00031 * 22 21 20 24 24 C 1.52991 * 109.47188 * 299.99791 * 23 22 21 25 25 C 1.53001 * 109.47530 * 59.99872 * 24 23 22 26 26 C 1.38366 * 120.29282 * 0.30364 * 19 18 17 27 27 C 1.37955 * 120.14153 * 359.95081 * 26 19 18 28 28 H 0.97002 * 119.99645 * 0.02562 * 1 2 3 29 29 H 0.97002 * 120.00219 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.46866 * 60.00501 * 12 10 9 31 31 H 1.09000 * 109.47102 * 299.99987 * 12 10 9 32 32 H 0.97006 * 120.00287 * 0.02562 * 13 12 10 33 33 H 1.08004 * 120.07571 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.93252 * 179.75129 * 18 17 16 35 35 H 1.09007 * 109.47072 * 0.02562 * 20 19 18 36 36 H 1.08997 * 109.46607 * 299.99707 * 21 20 19 37 37 H 1.09001 * 109.46866 * 59.99682 * 21 20 19 38 38 H 1.08997 * 109.47349 * 300.00056 * 22 21 20 39 39 H 1.09001 * 109.46926 * 179.97438 * 22 21 20 40 40 H 1.09000 * 109.46893 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.47019 * 59.99823 * 23 22 21 42 42 H 1.09007 * 109.47119 * 299.99859 * 24 23 22 43 43 H 1.09002 * 109.47795 * 180.02562 * 24 23 22 44 44 H 1.08994 * 109.47439 * 179.97438 * 25 24 23 45 45 H 1.09007 * 109.46930 * 59.99872 * 25 24 23 46 46 H 1.07992 * 119.92752 * 179.97438 * 26 19 18 47 47 H 1.08003 * 120.07075 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7002 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3707 0.0021 11 8 3.4472 -3.4210 0.0021 12 6 5.5607 -2.3707 0.0021 13 7 6.0490 -3.7518 0.0027 14 6 7.3741 -3.9983 0.0023 15 8 8.1640 -3.0743 0.0019 16 6 7.8668 -5.3921 0.0035 17 6 6.9625 -6.4553 -0.0003 18 6 7.4289 -7.7536 0.0061 19 6 8.7898 -8.0030 0.0053 20 6 9.2921 -9.4238 0.0060 21 6 10.1431 -9.6633 1.2548 22 6 10.6525 -11.1060 1.2558 23 6 11.5014 -11.3479 0.0060 24 6 10.6506 -11.1084 -1.2427 25 6 10.1410 -9.6658 -1.2437 26 6 9.6917 -6.9537 0.0042 27 6 9.2384 -5.6507 0.0031 28 1 -0.4850 0.8401 -0.0004 29 1 3.8648 -0.3634 0.0014 30 1 5.9240 -1.8561 0.8917 31 1 5.9240 -1.8576 -0.8883 32 1 5.4186 -4.4892 0.0027 33 1 5.8999 -6.2620 -0.0038 34 1 6.7302 -8.5772 0.0072 35 1 8.4443 -10.1089 0.0067 36 1 10.9908 -8.9782 1.2536 37 1 9.5382 -9.4913 2.1451 38 1 9.8045 -11.7908 1.2571 39 1 11.2591 -11.2765 2.1452 40 1 11.8647 -12.3756 0.0070 41 1 12.3494 -10.6631 0.0047 42 1 9.8025 -11.7933 -1.2413 43 1 11.2551 -11.2812 -2.1331 44 1 9.5352 -9.4951 -2.1336 45 1 10.9890 -8.9809 -1.2451 46 1 10.7527 -7.1551 0.0040 47 1 9.9434 -4.8325 0.0019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344122693.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:32 Heat of formation + Delta-G solvation = -74.205829 kcal Electronic energy + Delta-G solvation = -26735.727012 eV Core-core repulsion = 22881.937435 eV Total energy + Delta-G solvation = -3853.789578 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.47286 -39.47744 -38.42510 -37.59721 -34.60883 -33.84263 -33.01906 -31.82560 -31.13870 -31.13369 -29.59597 -27.64694 -24.77308 -23.93628 -22.94468 -22.75067 -21.74132 -20.33423 -19.74743 -19.69823 -18.84253 -17.83555 -16.43839 -16.03696 -15.65983 -15.40050 -15.15782 -15.13859 -14.81082 -14.66013 -14.58340 -14.24261 -14.06934 -13.79590 -13.63230 -13.37057 -13.23360 -12.96322 -12.58269 -12.50307 -12.37738 -12.20357 -11.99479 -11.98800 -11.64110 -11.53307 -11.25228 -11.18945 -10.78972 -10.65841 -10.53832 -10.48409 -10.08417 -9.89329 -9.72035 -9.14318 -9.04772 -8.80426 -8.77326 -8.32617 -6.42656 -3.95281 0.72703 1.22462 2.85176 2.98300 3.03007 3.10921 3.24191 3.53085 3.77233 4.01974 4.16240 4.29365 4.41868 4.50056 4.62375 4.70258 4.78534 4.87727 4.88645 4.90524 5.09889 5.12146 5.12180 5.13725 5.20493 5.25321 5.31768 5.43696 5.62133 5.64513 5.68328 5.71875 5.73612 5.74347 5.77280 5.78625 5.82582 5.86725 5.94297 6.03620 6.16583 6.25117 6.38572 6.50619 6.72577 7.41922 7.69167 7.98009 8.30498 8.43630 8.79517 9.27625 9.60769 10.69402 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.033417 B = 0.001841 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.695772 B =15208.144080 C =15699.749699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.575 5.575 10 C 0.437 3.563 11 O -0.579 6.579 12 C 0.106 3.894 13 N -0.703 5.703 14 C 0.556 3.444 15 O -0.548 6.548 16 C -0.133 4.133 17 C -0.080 4.080 18 C -0.124 4.124 19 C -0.055 4.055 20 C -0.050 4.050 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.111 4.111 26 C -0.126 4.126 27 C -0.058 4.058 28 H 0.276 0.724 29 H 0.375 0.625 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.411 0.589 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.126 0.874 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.907 -19.490 -0.006 30.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.213 5.213 10 C 0.223 3.777 11 O -0.464 6.464 12 C -0.022 4.022 13 N -0.357 5.357 14 C 0.343 3.657 15 O -0.427 6.427 16 C -0.136 4.136 17 C -0.099 4.099 18 C -0.142 4.142 19 C -0.055 4.055 20 C -0.068 4.068 21 C -0.149 4.149 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.149 4.149 26 C -0.144 4.144 27 C -0.077 4.077 28 H 0.086 0.914 29 H 0.208 0.792 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.251 0.749 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.144 0.856 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 22.786 -19.377 -0.006 29.911 hybrid contribution 0.090 1.169 0.015 1.173 sum 22.876 -18.208 0.009 29.237 Atomic orbital electron populations 1.69618 1.05712 1.27838 1.48046 1.25070 0.95538 0.98179 0.97090 0.86670 0.79919 0.83749 0.79155 1.19374 1.19950 1.19222 1.19443 0.78938 0.96819 1.48721 0.86056 1.42118 1.07715 1.06124 1.65300 1.19619 0.88006 0.84915 0.85123 1.90532 1.69185 1.30913 1.55766 1.21002 0.93841 0.83831 1.03505 1.45627 1.06893 1.09317 1.73863 1.18256 0.82130 0.88694 0.76619 1.90747 1.55511 1.45641 1.50789 1.19929 0.94559 0.92660 1.06482 1.21447 0.99742 0.92290 0.96375 1.21012 0.94936 0.96626 1.01667 1.20069 0.93341 0.95226 0.96889 1.20236 0.98497 0.92368 0.95700 1.21608 0.99397 0.96756 0.97130 1.21544 0.99671 0.96685 0.97835 1.21551 0.98314 1.01284 0.94693 1.21541 0.99666 0.96684 0.97840 1.21607 0.99410 0.96752 0.97122 1.20923 0.99656 0.91760 1.02036 1.21243 0.94353 0.97093 0.95001 0.91361 0.79215 0.89536 0.89532 0.74910 0.85054 0.85442 0.90212 0.91619 0.91683 0.91927 0.91939 0.92159 0.91999 0.91934 0.91939 0.91681 0.91628 0.85614 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.85 13.96 55.50 0.77 -24.07 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 18.96 27.74 -169.99 -4.71 14.24 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 7 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 8 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 9 N -0.58 -13.35 5.09 -10.96 -0.06 -13.40 16 10 C 0.44 9.62 7.85 -10.98 -0.09 9.53 16 11 O -0.58 -14.56 15.24 5.55 0.08 -14.47 16 12 C 0.11 1.86 6.15 -5.20 -0.03 1.82 16 13 N -0.70 -11.56 5.48 -62.43 -0.34 -11.90 16 14 C 0.56 8.95 7.77 -12.33 -0.10 8.85 16 15 O -0.55 -10.17 16.35 5.31 0.09 -10.09 16 16 C -0.13 -1.77 5.87 -104.97 -0.62 -2.38 16 17 C -0.08 -0.92 9.54 -39.19 -0.37 -1.29 16 18 C -0.12 -1.21 9.65 -39.64 -0.38 -1.59 16 19 C -0.05 -0.49 4.79 -104.53 -0.50 -0.99 16 20 C -0.05 -0.34 2.36 -91.77 -0.22 -0.56 16 21 C -0.11 -0.70 5.02 -26.73 -0.13 -0.84 16 22 C -0.12 -0.65 5.92 -26.73 -0.16 -0.81 16 23 C -0.12 -0.62 5.92 -26.73 -0.16 -0.78 16 24 C -0.12 -0.65 5.92 -26.74 -0.16 -0.81 16 25 C -0.11 -0.70 5.02 -26.73 -0.13 -0.84 16 26 C -0.13 -1.18 8.69 -39.64 -0.34 -1.52 16 27 C -0.06 -0.68 9.60 -39.18 -0.38 -1.05 16 28 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 30 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.41 6.61 5.47 -40.82 -0.22 6.39 16 33 H 0.13 1.45 6.41 -52.48 -0.34 1.12 16 34 H 0.13 0.99 7.94 -52.49 -0.42 0.58 16 35 H 0.08 0.53 7.87 -51.93 -0.41 0.12 16 36 H 0.07 0.42 7.37 -51.93 -0.38 0.03 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.42 7.38 -51.93 -0.38 0.03 16 46 H 0.13 0.93 7.08 -52.49 -0.37 0.55 16 47 H 0.13 1.56 7.65 -52.48 -0.40 1.16 16 LS Contribution 380.37 15.07 5.73 5.73 Total: -1.00 -32.02 380.37 -9.39 -41.41 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -6.94 Total: 13.39 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -4.02 Total: -0.83 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.38 Total: -49.38 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: 0.17 Total: -24.56 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.71 Total: 14.24 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.02 -9.39 -41.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344122693.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.797 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds