Wall clock time and date at job start Tue Mar 31 2020 16:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99967 * 2 1 4 4 H 1.48502 * 109.46629 * 239.99716 * 3 2 1 5 5 H 1.48499 * 109.46893 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47414 * 119.99568 * 3 2 1 7 7 C 1.38809 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00428 * 190.96445 * 7 2 1 9 9 N 1.36935 * 120.00087 * 10.97209 * 7 2 1 10 10 C 1.46921 * 120.63452 * 211.16998 * 9 7 2 11 11 C 1.53195 * 108.77835 * 233.58800 * 10 9 7 12 12 C 1.53037 * 109.30802 * 305.36023 * 11 10 9 13 13 N 1.46503 * 109.45795 * 181.38474 * 12 11 10 14 14 C 1.34779 * 119.99930 * 155.00181 * 13 12 11 15 15 O 1.21285 * 120.00281 * 4.77859 * 14 13 12 16 16 C 1.50703 * 120.00154 * 184.77575 * 14 13 12 17 17 H 1.08998 * 109.34103 * 231.89295 * 16 14 13 18 18 O 1.42722 * 109.33763 * 351.57374 * 16 14 13 19 19 C 1.43215 * 113.11554 * 172.01161 * 18 16 14 20 20 C 1.52975 * 108.47397 * 289.27463 * 19 18 16 21 21 C 1.50747 * 109.76606 * 49.16109 * 20 19 18 22 22 C 1.38591 * 118.76602 * 163.22680 * 21 20 19 23 23 C 1.38077 * 120.27881 * 179.85533 * 22 21 20 24 24 C 1.38266 * 119.86025 * 359.95779 * 23 22 21 25 25 C 1.38049 * 119.89316 * 0.07991 * 24 23 22 26 26 C 1.37907 * 121.35153 * 343.15982 * 21 20 19 27 27 C 1.53041 * 109.54104 * 61.36787 * 12 11 10 28 28 C 1.46925 * 120.63152 * 31.14546 * 9 7 2 29 29 H 0.96996 * 120.00219 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.59180 * 113.79615 * 10 9 7 31 31 H 1.09004 * 109.58978 * 353.37028 * 10 9 7 32 32 H 1.09003 * 109.50031 * 185.41592 * 11 10 9 33 33 H 1.08990 * 109.49995 * 65.31150 * 11 10 9 34 34 H 1.08998 * 109.46641 * 301.34379 * 12 11 10 35 35 H 0.96992 * 120.00147 * 334.99897 * 13 12 11 36 36 H 1.08997 * 109.63669 * 48.96819 * 19 18 16 37 37 H 1.08997 * 109.63861 * 169.58342 * 19 18 16 38 38 H 1.09002 * 109.42636 * 169.25371 * 20 19 18 39 39 H 1.09002 * 109.42218 * 289.13540 * 20 19 18 40 40 H 1.08003 * 119.86660 * 359.82411 * 22 21 20 41 41 H 1.07997 * 120.07089 * 179.97438 * 23 22 21 42 42 H 1.07993 * 120.04948 * 180.09733 * 24 23 22 43 43 H 1.07998 * 119.84562 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.49755 * 58.58129 * 27 12 11 45 45 H 1.08991 * 109.50425 * 178.64891 * 27 12 11 46 46 H 1.09004 * 109.58716 * 6.62445 * 28 9 7 47 47 H 1.09001 * 109.58734 * 246.20402 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0755 -1.2106 0.1784 9 7 1.3444 -2.3773 -0.2246 10 6 1.8007 -3.6274 0.3978 11 6 1.9920 -4.6821 -0.6967 12 6 0.6973 -4.8168 -1.5015 13 7 0.8659 -5.8482 -2.5281 14 6 -0.2101 -6.5001 -3.0116 15 8 -1.3246 -6.1741 -2.6613 16 6 -0.0286 -7.6341 -3.9874 17 1 -0.6548 -7.4610 -4.8626 18 8 1.3393 -7.6968 -4.3899 19 6 1.6416 -8.8554 -5.1757 20 6 1.5918 -10.0844 -4.2661 21 6 0.3156 -10.0735 -3.4638 22 6 -0.0963 -11.2458 -2.8500 23 6 -1.2587 -11.2704 -2.1051 24 6 -2.0145 -10.1204 -1.9704 25 6 -1.6052 -8.9526 -2.5823 26 6 -0.4392 -8.9269 -3.3319 27 6 0.3692 -3.4802 -2.1708 28 6 0.1597 -2.4119 -1.0929 29 1 -0.4850 0.8400 -0.0004 30 1 1.0540 -3.9737 1.1124 31 1 2.7477 -3.4564 0.9098 32 1 2.2375 -5.6407 -0.2395 33 1 2.8019 -4.3764 -1.3590 34 1 -0.1174 -5.0985 -0.8344 35 1 1.7519 -6.0620 -2.8600 36 1 0.9056 -8.9596 -5.9728 37 1 2.6389 -8.7573 -5.6044 38 1 1.6294 -10.9877 -4.8750 39 1 2.4452 -10.0684 -3.5882 40 1 0.4941 -12.1441 -2.9550 41 1 -1.5767 -12.1858 -1.6285 42 1 -2.9233 -10.1358 -1.3873 43 1 -2.1959 -8.0547 -2.4762 44 1 1.1945 -3.1857 -2.8192 45 1 -0.5399 -3.5833 -2.7631 46 1 0.0237 -1.4387 -1.5646 47 1 -0.7209 -2.6590 -0.4999 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611001261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:13 Heat of formation + Delta-G solvation = -36.788424 kcal Electronic energy + Delta-G solvation = -28650.438827 eV Core-core repulsion = 24798.271790 eV Total energy + Delta-G solvation = -3852.167037 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.98413 -39.22342 -37.83010 -37.26050 -34.38152 -33.37243 -32.10509 -31.92034 -30.13097 -29.79514 -29.22902 -26.59858 -24.86644 -24.15335 -22.78695 -22.18746 -21.86261 -20.58236 -20.05603 -19.28130 -17.60863 -17.47843 -16.74511 -16.48963 -15.86089 -15.60334 -15.35546 -14.85566 -14.81191 -14.44147 -13.97958 -13.85714 -13.75815 -13.46125 -13.35684 -12.97425 -12.94645 -12.81553 -12.42362 -12.34178 -12.18078 -12.04151 -11.50481 -11.43246 -11.04102 -10.98145 -10.88391 -10.71370 -10.34927 -10.20963 -10.07620 -10.04376 -9.85849 -9.73364 -9.48922 -8.96260 -8.82825 -8.64718 -8.39247 -6.59732 -5.74516 -3.22777 1.03057 1.16941 2.66417 3.21874 3.36698 3.40940 3.45661 3.46560 3.56813 4.31543 4.34121 4.49650 4.51428 4.76575 4.79044 4.86677 4.97822 5.05517 5.12377 5.19540 5.35953 5.42288 5.45184 5.49043 5.50688 5.53330 5.68846 5.74501 5.87665 5.88989 6.13495 6.20686 6.27270 6.30080 6.33178 6.42664 6.50228 6.60343 6.66411 6.70716 6.77974 6.83655 6.97011 6.99602 7.44085 7.73818 7.78935 7.82199 8.37716 8.51395 9.25662 9.87141 10.45465 11.33555 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.023776 B = 0.002646 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.373781 B =10579.195315 C =10944.381176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.004 3.996 3 Si 0.905 3.095 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.138 4.138 12 C 0.149 3.851 13 N -0.705 5.705 14 C 0.530 3.470 15 O -0.534 6.534 16 C 0.117 3.883 17 H 0.102 0.898 18 O -0.369 6.369 19 C 0.061 3.939 20 C -0.116 4.116 21 C -0.069 4.069 22 C -0.125 4.125 23 C -0.112 4.112 24 C -0.124 4.124 25 C -0.100 4.100 26 C -0.115 4.115 27 C -0.147 4.147 28 C 0.175 3.825 29 H 0.255 0.745 30 H 0.020 0.980 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.404 0.596 36 H 0.059 0.941 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.147 0.853 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.090 0.910 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.531 -23.988 -9.951 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.082 0.918 9 N -0.316 5.316 10 C 0.022 3.978 11 C -0.178 4.178 12 C 0.046 3.954 13 N -0.355 5.355 14 C 0.314 3.686 15 O -0.412 6.412 16 C 0.056 3.944 17 H 0.119 0.881 18 O -0.288 6.288 19 C -0.015 4.015 20 C -0.153 4.153 21 C -0.069 4.069 22 C -0.143 4.143 23 C -0.130 4.130 24 C -0.142 4.142 25 C -0.117 4.117 26 C -0.115 4.115 27 C -0.187 4.187 28 C 0.049 3.951 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.239 0.761 36 H 0.077 0.923 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.164 0.836 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.109 0.891 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.780 -23.434 -9.605 25.338 hybrid contribution 0.622 0.383 -0.231 0.766 sum 1.402 -23.051 -9.836 25.101 Atomic orbital electron populations 1.69969 1.05254 1.25609 1.53972 1.25171 0.95400 0.98409 1.00486 0.86337 0.78812 0.83281 0.78075 1.21013 1.21614 1.20874 1.19126 0.90874 0.83974 1.44453 0.91846 1.44058 1.32093 1.03367 1.52039 1.20846 0.98017 0.86770 0.92180 1.22334 0.96370 0.99672 0.99466 1.21097 0.98682 0.87106 0.88494 1.46288 1.09726 1.38448 1.41034 1.19813 0.85294 0.82169 0.81320 1.90706 1.24222 1.66202 1.60092 1.21081 0.84773 0.91961 0.96631 0.88095 1.88016 1.25095 1.44047 1.71618 1.22675 1.02152 0.84223 0.92494 1.21162 0.95771 0.99640 0.98759 1.19440 0.95989 0.92840 0.98596 1.20999 0.97280 0.97317 0.98744 1.21175 0.95026 0.98381 0.98449 1.21167 1.00228 0.92750 1.00047 1.21606 0.95746 0.99476 0.94922 1.19699 0.96785 0.94062 1.00998 1.22575 1.00415 0.95492 1.00223 1.20772 0.88151 0.96946 0.89278 0.93509 0.96251 0.92364 0.92697 0.91801 0.90207 0.76075 0.92271 0.87670 0.89534 0.89402 0.85963 0.85954 0.85723 0.83565 0.92671 0.92781 0.89139 0.96205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 11.05 55.49 0.61 -26.01 16 2 C 0.00 0.12 5.04 -17.43 -0.09 0.03 16 3 Si 0.91 21.85 29.57 -169.99 -5.03 16.82 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -7.03 9.58 -15.06 -0.14 -7.18 16 8 H 0.06 1.71 7.85 -52.48 -0.41 1.29 16 9 N -0.59 -15.07 2.99 -172.32 -0.51 -15.59 16 10 C 0.15 3.15 6.51 -3.71 -0.02 3.12 16 11 C -0.14 -2.41 5.55 -26.61 -0.15 -2.56 16 12 C 0.15 2.72 2.38 -67.89 -0.16 2.56 16 13 N -0.71 -10.90 5.03 -53.76 -0.27 -11.17 16 14 C 0.53 8.29 6.84 -10.98 -0.08 8.21 16 15 O -0.53 -9.94 14.42 5.55 0.08 -9.86 16 16 C 0.12 1.43 3.22 -29.05 -0.09 1.34 16 17 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 18 O -0.37 -4.01 9.17 -35.23 -0.32 -4.33 16 19 C 0.06 0.45 6.85 37.14 0.25 0.71 16 20 C -0.12 -0.85 6.00 -27.87 -0.17 -1.01 16 21 C -0.07 -0.69 5.78 -104.59 -0.60 -1.29 16 22 C -0.13 -1.13 9.67 -39.51 -0.38 -1.52 16 23 C -0.11 -1.04 10.05 -39.63 -0.40 -1.44 16 24 C -0.12 -1.32 10.05 -39.64 -0.40 -1.72 16 25 C -0.10 -1.26 9.06 -39.50 -0.36 -1.62 16 26 C -0.11 -1.38 5.46 -104.61 -0.57 -1.95 16 27 C -0.15 -3.03 5.65 -26.61 -0.15 -3.18 16 28 C 0.17 4.34 5.25 -3.71 -0.02 4.32 16 29 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.61 7.65 -51.93 -0.40 1.21 16 35 H 0.40 5.52 7.41 -40.82 -0.30 5.21 16 36 H 0.06 0.39 8.07 -51.93 -0.42 -0.02 16 37 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 43 H 0.15 2.08 5.82 -52.49 -0.31 1.77 16 44 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.05 1.12 8.09 -51.93 -0.42 0.70 16 46 H 0.09 2.50 6.10 -51.93 -0.32 2.19 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -31.96 371.18 -10.57 -42.53 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -7.19 Total: 5.18 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -3.53 Total: -3.18 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.17 Total: -52.76 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.24 Total: -14.19 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.96 -10.57 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611001261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.741 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds