Wall clock time and date at job start Tue Mar 31 2020 16:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 119.99902 * 2 1 4 4 H 1.48503 * 109.47021 * 269.99552 * 3 2 1 5 5 H 1.48498 * 109.47436 * 29.99531 * 3 2 1 6 6 H 1.48495 * 109.47494 * 149.99721 * 3 2 1 7 7 C 1.38816 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00111 * 169.00532 * 7 2 1 9 9 N 1.36938 * 119.99696 * 349.00479 * 7 2 1 10 10 C 1.46926 * 120.63123 * 328.11540 * 9 7 2 11 11 C 1.53194 * 108.77663 * 233.62753 * 10 9 7 12 12 C 1.53039 * 109.31290 * 305.36958 * 11 10 9 13 13 N 1.46501 * 109.45895 * 181.38306 * 12 11 10 14 14 C 1.34785 * 119.99792 * 155.00014 * 13 12 11 15 15 O 1.21279 * 119.99842 * 4.68765 * 14 13 12 16 16 C 1.50701 * 119.99735 * 184.68910 * 14 13 12 17 17 H 1.08998 * 109.33829 * 128.75922 * 16 14 13 18 18 O 1.42725 * 109.20983 * 9.16850 * 16 14 13 19 19 C 1.43181 * 113.07664 * 188.04632 * 18 16 14 20 20 C 1.52965 * 108.49957 * 70.74977 * 19 18 16 21 21 C 1.50740 * 109.71580 * 310.70005 * 20 19 18 22 22 C 1.38601 * 118.76839 * 197.03373 * 21 20 19 23 23 C 1.38069 * 120.27776 * 180.18647 * 22 21 20 24 24 C 1.38264 * 119.85844 * 0.03282 * 23 22 21 25 25 C 1.38046 * 119.89994 * 359.90741 * 24 23 22 26 26 C 1.37906 * 121.34861 * 17.08819 * 21 20 19 27 27 C 1.53037 * 109.54024 * 61.36047 * 12 11 10 28 28 C 1.46925 * 120.62936 * 148.13483 * 9 7 2 29 29 H 0.97001 * 120.00163 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.58449 * 113.84414 * 10 9 7 31 31 H 1.08996 * 109.70860 * 353.48779 * 10 9 7 32 32 H 1.08998 * 109.50000 * 185.41237 * 11 10 9 33 33 H 1.09001 * 109.49597 * 65.31331 * 11 10 9 34 34 H 1.09005 * 109.45762 * 301.35294 * 12 11 10 35 35 H 0.96994 * 120.00320 * 334.99406 * 13 12 11 36 36 H 1.09001 * 109.67773 * 311.00974 * 19 18 16 37 37 H 1.09006 * 109.57571 * 190.42284 * 19 18 16 38 38 H 1.09006 * 109.42211 * 190.63906 * 20 19 18 39 39 H 1.09001 * 109.42319 * 70.76727 * 20 19 18 40 40 H 1.08006 * 119.86245 * 0.21463 * 22 21 20 41 41 H 1.07998 * 120.06967 * 180.02562 * 23 22 21 42 42 H 1.08008 * 120.04730 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.84964 * 180.02562 * 25 24 23 44 44 H 1.09000 * 109.49902 * 58.58510 * 27 12 11 45 45 H 1.09005 * 109.49910 * 178.68563 * 27 12 11 46 46 H 1.08998 * 109.58871 * 246.15513 * 28 9 7 47 47 H 1.09000 * 109.58600 * 6.43915 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0754 -1.2108 -0.1778 9 7 1.3445 -2.3771 0.2273 10 6 0.1696 -2.4137 1.1088 11 6 0.3897 -3.4872 2.1793 12 6 0.7079 -4.8213 1.5003 13 7 0.8864 -5.8577 2.5202 14 6 0.6745 -7.1521 2.2100 15 8 0.4193 -7.4678 1.0671 16 6 0.7547 -8.2070 3.2832 17 1 -0.1453 -8.8212 3.2536 18 8 0.8525 -7.5733 4.5582 19 6 1.1172 -8.4929 5.6233 20 6 2.5548 -8.9965 5.4837 21 6 2.7991 -9.4513 4.0674 22 6 3.8929 -10.2614 3.8063 23 6 4.1483 -10.6928 2.5198 24 6 3.3097 -10.3146 1.4877 25 6 2.2193 -9.5088 1.7472 26 6 1.9604 -9.0766 3.0388 27 6 1.9935 -4.6851 0.6814 28 6 1.7916 -3.6251 -0.4061 29 1 -0.4850 0.8400 -0.0004 30 1 -0.7181 -2.6567 0.5247 31 1 0.0382 -1.4429 1.5866 32 1 -0.5132 -3.5914 2.7810 33 1 1.2228 -3.1972 2.8196 34 1 -0.1148 -5.0985 0.8410 35 1 1.1571 -5.6124 3.4187 36 1 0.4267 -9.3342 5.5619 37 1 0.9978 -7.9866 6.5812 38 1 2.7139 -9.8321 6.1653 39 1 3.2465 -8.1910 5.7302 40 1 4.5481 -10.5568 4.6125 41 1 5.0014 -11.3243 2.3202 42 1 3.5068 -10.6500 0.4801 43 1 1.5645 -9.2142 0.9404 44 1 2.8114 -4.3836 1.3357 45 1 2.2322 -5.6419 0.2169 46 1 1.0362 -3.9669 -1.1136 47 1 2.7316 -3.4525 -0.9302 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611001264.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:18 Heat of formation + Delta-G solvation = -37.642353 kcal Electronic energy + Delta-G solvation = -28710.186861 eV Core-core repulsion = 24857.982794 eV Total energy + Delta-G solvation = -3852.204066 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.99026 -39.23494 -37.83260 -37.26246 -34.38466 -33.37297 -32.11578 -31.91102 -30.18160 -29.80373 -29.18937 -26.59808 -24.86887 -24.14964 -22.79561 -22.21618 -21.84056 -20.62557 -20.00934 -19.29926 -17.63549 -17.49587 -16.78683 -16.36425 -15.84524 -15.60236 -15.41429 -14.90294 -14.77225 -14.46788 -14.02383 -13.88769 -13.65318 -13.48777 -13.39119 -13.02818 -12.90813 -12.83354 -12.40067 -12.34082 -12.18253 -12.04814 -11.50269 -11.40358 -11.04977 -10.98241 -10.83395 -10.70996 -10.45361 -10.24058 -10.06948 -10.02209 -9.87678 -9.73561 -9.47435 -8.95921 -8.82753 -8.65852 -8.44616 -6.59219 -5.76999 -3.24479 1.03490 1.17325 2.63907 3.22176 3.36401 3.39419 3.45065 3.47116 3.56951 4.31995 4.33608 4.50231 4.50673 4.76390 4.78976 4.86539 4.96962 5.05234 5.12747 5.19941 5.38498 5.42244 5.44549 5.49768 5.53583 5.55868 5.63971 5.75076 5.88091 5.92304 6.13048 6.21006 6.26915 6.32030 6.34375 6.41352 6.56501 6.59892 6.63309 6.65306 6.77961 6.84422 6.95942 7.04010 7.36622 7.65063 7.77456 7.82269 8.35570 8.50129 9.24461 9.85790 10.44876 11.31695 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.002748 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.738059 B =10186.044945 C =10525.242837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.593 5.593 10 C 0.176 3.824 11 C -0.147 4.147 12 C 0.149 3.851 13 N -0.704 5.704 14 C 0.530 3.470 15 O -0.537 6.537 16 C 0.116 3.884 17 H 0.102 0.898 18 O -0.368 6.368 19 C 0.061 3.939 20 C -0.117 4.117 21 C -0.068 4.068 22 C -0.125 4.125 23 C -0.112 4.112 24 C -0.124 4.124 25 C -0.099 4.099 26 C -0.115 4.115 27 C -0.138 4.138 28 C 0.148 3.852 29 H 0.254 0.746 30 H 0.021 0.979 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.405 0.595 36 H 0.059 0.941 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.146 0.854 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.020 0.980 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.083 -21.843 12.435 25.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.081 0.919 9 N -0.316 5.316 10 C 0.050 3.950 11 C -0.187 4.187 12 C 0.046 3.954 13 N -0.354 5.354 14 C 0.314 3.686 15 O -0.415 6.415 16 C 0.055 3.945 17 H 0.120 0.880 18 O -0.287 6.287 19 C -0.016 4.016 20 C -0.154 4.154 21 C -0.069 4.069 22 C -0.143 4.143 23 C -0.130 4.130 24 C -0.142 4.142 25 C -0.117 4.117 26 C -0.116 4.116 27 C -0.179 4.179 28 C 0.021 3.979 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.240 0.760 36 H 0.077 0.923 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.163 0.837 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.038 0.962 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.748 -21.666 11.644 24.881 hybrid contribution 0.700 0.580 0.426 1.004 sum 4.448 -21.086 12.069 24.700 Atomic orbital electron populations 1.69971 1.05259 1.25489 1.54207 1.25178 0.95402 0.98408 1.00461 0.86272 0.79070 0.83540 0.77721 1.21351 1.21589 1.20470 1.19168 0.90917 0.83962 1.44191 0.91867 1.44043 1.32882 1.03647 1.50994 1.20731 0.88592 0.96557 0.89132 1.22549 1.00504 0.95208 1.00398 1.21102 0.98524 0.86531 0.89229 1.46312 1.67599 1.05931 1.15517 1.19835 0.76899 0.83541 0.88309 1.90692 1.49775 1.81012 1.20068 1.21092 0.96818 0.93007 0.83556 0.88024 1.88033 1.92376 1.33624 1.14660 1.22671 0.94610 0.93550 0.90730 1.21164 0.98759 1.01962 0.93493 1.19444 0.95113 0.97504 0.94790 1.21006 0.97290 0.98854 0.97155 1.21174 0.99271 0.99619 0.92943 1.21161 0.95186 0.98471 0.99354 1.21569 0.97736 0.95775 0.96617 1.19702 0.97229 1.00379 0.94313 1.22367 0.96889 0.99446 0.99159 1.20879 0.97932 0.86637 0.92436 0.93585 0.96134 0.89072 0.92682 0.92184 0.90110 0.76004 0.92282 0.87670 0.89526 0.89350 0.85950 0.85945 0.85733 0.83666 0.92416 0.92715 0.96216 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 11.11 55.49 0.62 -25.65 16 2 C 0.00 0.11 5.04 -17.43 -0.09 0.03 16 3 Si 0.90 21.72 29.57 -169.99 -5.03 16.69 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.99 9.57 -15.06 -0.14 -7.13 16 8 H 0.06 1.72 7.85 -52.49 -0.41 1.31 16 9 N -0.59 -15.08 2.98 -172.32 -0.51 -15.60 16 10 C 0.18 4.21 5.25 -3.71 -0.02 4.19 16 11 C -0.15 -2.78 5.55 -26.61 -0.15 -2.93 16 12 C 0.15 2.71 2.38 -67.89 -0.16 2.55 16 13 N -0.70 -10.86 5.00 -53.76 -0.27 -11.13 16 14 C 0.53 8.14 6.82 -10.98 -0.07 8.07 16 15 O -0.54 -9.71 14.47 5.56 0.08 -9.63 16 16 C 0.12 1.41 3.22 -29.06 -0.09 1.32 16 17 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 18 O -0.37 -4.00 9.19 -35.23 -0.32 -4.32 16 19 C 0.06 0.46 6.84 37.14 0.25 0.71 16 20 C -0.12 -0.87 6.01 -27.88 -0.17 -1.04 16 21 C -0.07 -0.70 5.78 -104.59 -0.60 -1.30 16 22 C -0.13 -1.15 9.67 -39.51 -0.38 -1.53 16 23 C -0.11 -1.05 10.05 -39.63 -0.40 -1.45 16 24 C -0.12 -1.32 10.05 -39.64 -0.40 -1.72 16 25 C -0.10 -1.25 9.07 -39.50 -0.36 -1.61 16 26 C -0.12 -1.39 5.45 -104.62 -0.57 -1.96 16 27 C -0.14 -2.65 5.65 -26.61 -0.15 -2.80 16 28 C 0.15 3.27 6.52 -3.71 -0.02 3.25 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.61 7.65 -51.93 -0.40 1.21 16 35 H 0.40 5.63 7.46 -40.82 -0.30 5.32 16 36 H 0.06 0.39 8.07 -51.93 -0.42 -0.03 16 37 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 43 H 0.15 2.03 5.85 -52.49 -0.31 1.72 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 1.03 8.10 -51.93 -0.42 0.61 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -31.58 371.40 -10.57 -42.15 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.20 Total: 5.24 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -3.53 Total: -3.35 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.17 Total: -52.38 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.24 Total: -13.95 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.58 -10.57 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611001264.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.505 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds