Wall clock time and date at job start Tue Mar 31 2020 15:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48504 * 109.46788 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47041 * 299.99656 * 3 2 1 6 6 H 1.48497 * 109.47258 * 59.99785 * 3 2 1 7 7 C 1.38815 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99853 * 163.17555 * 7 2 1 9 9 N 1.36933 * 119.99826 * 343.17890 * 7 2 1 10 10 C 1.46930 * 120.63005 * 151.86766 * 9 7 2 11 11 C 1.53196 * 108.77199 * 126.11515 * 10 9 7 12 12 C 1.53033 * 109.31405 * 54.63584 * 11 10 9 13 13 C 1.53031 * 109.54059 * 298.63287 * 12 11 10 14 14 H 1.09004 * 109.49959 * 301.41515 * 13 12 11 15 15 N 1.46503 * 109.50027 * 181.34964 * 13 12 11 16 16 C 1.34772 * 119.99923 * 154.99977 * 15 13 12 17 17 O 1.21280 * 120.00477 * 359.97438 * 16 15 13 18 18 C 1.50703 * 120.00085 * 180.02562 * 16 15 13 19 19 H 1.08997 * 109.67489 * 305.51933 * 18 16 15 20 20 C 1.53408 * 109.67996 * 66.06312 * 18 16 15 21 21 C 1.53080 * 108.28999 * 184.44905 * 20 18 16 22 22 C 1.50768 * 109.66386 * 311.76479 * 21 20 18 23 23 C 1.38512 * 118.74820 * 197.71862 * 22 21 20 24 24 C 1.38111 * 120.31243 * 180.24456 * 23 22 21 25 25 C 1.38293 * 119.98085 * 359.97438 * 24 23 22 26 26 C 1.37974 * 119.95780 * 359.94188 * 25 24 23 27 27 C 1.38366 * 121.41476 * 17.80483 * 22 21 20 28 28 O 1.35843 * 121.80490 * 359.63128 * 27 22 21 29 29 C 1.46923 * 120.63142 * 331.58665 * 9 7 2 30 30 H 0.97002 * 120.00123 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.58579 * 245.89878 * 10 9 7 32 32 H 1.08997 * 109.58590 * 6.32998 * 10 9 7 33 33 H 1.09004 * 109.49340 * 174.58975 * 11 10 9 34 34 H 1.09001 * 109.49507 * 294.64560 * 11 10 9 35 35 H 1.09007 * 109.46180 * 58.65371 * 12 11 10 36 36 H 1.08998 * 109.45769 * 178.62363 * 12 11 10 37 37 H 0.96999 * 120.00060 * 334.99763 * 15 13 12 38 38 H 1.09003 * 109.70363 * 304.15202 * 20 18 16 39 39 H 1.09010 * 109.69735 * 64.75762 * 20 18 16 40 40 H 1.09000 * 109.42774 * 191.70513 * 21 20 18 41 41 H 1.09000 * 109.40661 * 71.80127 * 21 20 18 42 42 H 1.08000 * 119.84500 * 0.22135 * 23 22 21 43 43 H 1.07997 * 120.00815 * 179.97438 * 24 23 22 44 44 H 1.07993 * 120.02060 * 179.91625 * 25 24 23 45 45 H 1.08001 * 119.88727 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.59186 * 353.67075 * 29 9 7 47 47 H 1.08997 * 109.58930 * 114.09788 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0556 -1.2223 -0.2702 9 7 1.3695 -2.3625 0.3442 10 6 1.8147 -3.6528 -0.1995 11 6 2.0730 -4.6154 0.9640 12 6 0.8198 -4.7005 1.8382 13 6 0.5037 -3.3189 2.4155 14 1 1.3541 -2.9649 2.9984 15 7 -0.6772 -3.4078 3.2780 16 6 -0.8602 -2.5084 4.2648 17 8 -0.0470 -1.6256 4.4393 18 6 -2.0746 -2.6001 5.1524 19 1 -2.9765 -2.6108 4.5404 20 6 -2.0046 -3.8815 5.9929 21 6 -3.3015 -3.9997 6.7976 22 6 -3.5990 -2.6865 7.4761 23 6 -4.4962 -2.6701 8.5312 24 6 -4.7962 -1.4843 9.1726 25 6 -4.1992 -0.3063 8.7623 26 6 -3.3034 -0.3170 7.7130 27 6 -2.9980 -1.5099 7.0651 28 8 -2.1082 -1.4809 6.0390 29 6 0.2276 -2.3416 1.2685 30 1 -0.4850 0.8401 -0.0004 31 1 1.0404 -4.0628 -0.8479 32 1 2.7338 -3.5121 -0.7682 33 1 2.3110 -5.6043 0.5720 34 1 2.9090 -4.2495 1.5601 35 1 -0.0211 -5.0431 1.2352 36 1 0.9926 -5.4035 2.6531 37 1 -1.3274 -4.1140 3.1387 38 1 -1.8990 -4.7458 5.3372 39 1 -1.1540 -3.8290 6.6726 40 1 -3.1912 -4.7802 7.5504 41 1 -4.1218 -4.2555 6.1270 42 1 -4.9637 -3.5887 8.8535 43 1 -5.4968 -1.4771 9.9945 44 1 -4.4344 0.6214 9.2625 45 1 -2.8375 0.6035 7.3937 46 1 0.0995 -1.3357 1.6685 47 1 -0.6761 -2.6446 0.7398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008890708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:35 Heat of formation + Delta-G solvation = -54.328429 kcal Electronic energy + Delta-G solvation = -28543.006143 eV Core-core repulsion = 24690.078514 eV Total energy + Delta-G solvation = -3852.927629 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.03427 -40.71045 -39.07038 -38.19487 -35.96500 -35.33853 -34.43349 -32.25974 -31.80931 -31.14841 -30.32050 -27.42241 -27.20958 -24.83237 -24.00882 -23.67103 -23.43126 -21.83757 -21.20674 -20.69838 -18.99913 -18.75829 -18.51197 -17.67114 -17.07339 -16.84067 -16.24903 -16.17531 -15.77040 -15.74124 -15.36148 -15.24708 -15.04502 -14.83926 -14.73875 -14.28850 -14.16673 -14.14965 -13.97266 -13.51257 -13.46637 -12.98217 -12.89082 -12.70263 -12.54239 -12.43611 -12.31058 -12.18778 -12.06610 -11.99266 -11.70059 -11.62017 -11.46493 -11.28339 -10.78069 -10.60095 -10.17908 -9.74072 -9.15551 -8.71338 -7.92863 -5.38599 0.35759 0.44436 1.36163 1.41986 1.43991 1.50101 1.61396 2.44405 2.57610 2.81692 3.23737 3.45254 3.47763 3.73665 3.77704 3.80620 3.87997 3.95984 4.13957 4.16507 4.24029 4.26514 4.34274 4.46541 4.48786 4.59822 4.60510 4.63468 4.82188 4.85259 4.91439 4.95817 5.02634 5.09136 5.13848 5.19974 5.20776 5.31476 5.34329 5.39887 5.50795 5.51530 5.58376 5.59524 5.74330 5.86890 6.32488 6.39228 6.57101 7.08719 7.22426 7.82641 8.30850 9.11793 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.003169 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.282519 B = 8833.509532 C =10406.181412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.052 4.052 3 Si 0.959 3.041 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.301 1.301 7 C -0.262 4.262 8 H 0.068 0.932 9 N -0.611 5.611 10 C 0.134 3.866 11 C -0.123 4.123 12 C -0.105 4.105 13 C 0.132 3.868 14 H 0.048 0.952 15 N -0.696 5.696 16 C 0.511 3.489 17 O -0.576 6.576 18 C 0.078 3.922 19 H 0.116 0.884 20 C -0.139 4.139 21 C -0.070 4.070 22 C -0.171 4.171 23 C -0.084 4.084 24 C -0.152 4.152 25 C -0.091 4.091 26 C -0.176 4.176 27 C 0.100 3.900 28 O -0.329 6.329 29 C 0.177 3.823 30 H 0.246 0.754 31 H 0.025 0.975 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.418 0.582 38 H 0.125 0.875 39 H 0.067 0.933 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.158 0.842 43 H 0.154 0.846 44 H 0.149 0.851 45 H 0.114 0.886 46 H 0.038 0.962 47 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.697 -15.529 16.818 25.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.247 4.247 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.229 1.229 7 C -0.393 4.393 8 H 0.086 0.914 9 N -0.335 5.335 10 C 0.010 3.990 11 C -0.162 4.162 12 C -0.142 4.142 13 C 0.026 3.974 14 H 0.067 0.933 15 N -0.349 5.349 16 C 0.297 3.703 17 O -0.455 6.455 18 C 0.019 3.981 19 H 0.133 0.867 20 C -0.177 4.177 21 C -0.107 4.107 22 C -0.172 4.172 23 C -0.101 4.101 24 C -0.170 4.170 25 C -0.109 4.109 26 C -0.195 4.195 27 C 0.056 3.944 28 O -0.244 6.244 29 C 0.050 3.950 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.256 0.744 38 H 0.143 0.857 39 H 0.086 0.914 40 H 0.132 0.868 41 H 0.123 0.877 42 H 0.176 0.824 43 H 0.172 0.828 44 H 0.166 0.834 45 H 0.132 0.868 46 H 0.056 0.944 47 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -11.046 -14.641 16.846 24.903 hybrid contribution 0.254 1.589 -0.464 1.674 sum -10.792 -13.052 16.381 23.562 Atomic orbital electron populations 1.70161 1.06665 1.25464 1.55297 1.25797 0.96073 1.01595 1.01267 0.85322 0.79051 0.80282 0.76590 1.18567 1.20990 1.22900 1.19521 0.92851 0.86177 1.40715 0.91405 1.44250 1.36123 1.02919 1.50162 1.21206 0.97601 0.85514 0.94703 1.21915 0.97069 1.00168 0.97045 1.21644 0.99186 0.93506 0.99910 1.21556 0.86769 0.98377 0.90730 0.93330 1.45660 1.26396 1.31410 1.31440 1.20644 0.87016 0.81376 0.81271 1.90757 1.47110 1.35796 1.71792 1.22364 0.96757 0.87924 0.91100 0.86697 1.22243 1.00048 0.95723 0.99690 1.20609 0.96713 0.93575 0.99791 1.20212 1.01651 0.94407 1.00886 1.21307 0.95551 0.99787 0.93485 1.21450 1.01738 0.92098 1.01745 1.21223 0.94670 1.00196 0.94786 1.20834 1.02403 0.96100 1.00134 1.19162 0.91250 0.95030 0.89003 1.86049 1.56447 1.43151 1.38706 1.20792 0.88324 0.97336 0.88533 0.94491 0.95736 0.92733 0.88158 0.93229 0.90205 0.89094 0.74434 0.85690 0.91413 0.86785 0.87734 0.82397 0.82814 0.83376 0.86802 0.94374 0.97813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.16 11.20 21.65 0.24 -58.92 16 2 C -0.05 -3.12 4.92 84.86 0.42 -2.71 16 3 Si 0.96 49.00 29.59 68.60 2.03 51.03 16 4 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.30 -15.97 7.11 99.48 0.71 -15.26 16 7 C -0.26 -15.33 9.58 84.03 0.81 -14.53 16 8 H 0.07 3.84 7.88 -2.91 -0.02 3.82 16 9 N -0.61 -31.87 2.99 -699.09 -2.09 -33.96 16 10 C 0.13 5.40 6.52 86.36 0.56 5.97 16 11 C -0.12 -3.70 6.08 30.67 0.19 -3.52 16 12 C -0.10 -2.89 5.35 30.62 0.16 -2.73 16 13 C 0.13 5.07 2.60 45.07 0.12 5.19 16 14 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 15 N -0.70 -21.56 5.05 -442.16 -2.23 -23.79 16 16 C 0.51 18.97 7.15 87.66 0.63 19.60 16 17 O -0.58 -29.35 16.18 15.86 0.26 -29.10 16 18 C 0.08 2.18 3.21 29.99 0.10 2.28 16 19 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 20 C -0.14 -2.49 5.46 30.76 0.17 -2.32 16 21 C -0.07 -0.94 5.86 29.90 0.18 -0.76 16 22 C -0.17 -3.45 5.75 -19.75 -0.11 -3.57 16 23 C -0.08 -1.27 9.67 22.30 0.22 -1.06 16 24 C -0.15 -2.34 10.05 22.25 0.22 -2.11 16 25 C -0.09 -1.76 10.04 22.22 0.22 -1.54 16 26 C -0.18 -4.75 9.94 22.42 0.22 -4.52 16 27 C 0.10 2.86 6.47 22.52 0.15 3.00 16 28 O -0.33 -11.65 9.47 -72.90 -0.69 -12.34 16 29 C 0.18 8.99 4.89 86.36 0.42 9.41 16 30 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 2.16 7.93 -2.39 -0.02 2.14 16 33 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.08 1.96 8.14 -2.38 -0.02 1.95 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.42 8.58 8.45 -92.71 -0.78 7.80 16 38 H 0.12 1.34 7.97 -2.39 -0.02 1.33 16 39 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 44 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 45 H 0.11 3.28 8.06 -2.91 -0.02 3.26 16 46 H 0.04 2.36 6.06 -2.39 -0.01 2.35 16 47 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 Total: -1.00 -86.89 377.15 2.36 -84.53 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.19 Total: 16.47 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 4.66 Total: 6.08 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -4.08 Total: -116.67 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -0.43 Total: -41.44 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.03 Total: 51.03 kcal Total: -86.89 2.36 -84.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008890708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.203 kcal (2) G-P(sol) polarization free energy of solvation -86.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds