Wall clock time and date at job start Tue Mar 31 2020 15:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86804 * 119.99966 * 2 1 4 4 H 1.48503 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47127 * 300.00180 * 3 2 1 6 6 H 1.48502 * 109.47057 * 60.00014 * 3 2 1 7 7 C 1.39931 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99929 * 190.28174 * 7 2 1 9 9 C 1.41407 * 120.00224 * 10.26956 * 7 2 1 10 10 C 1.40772 * 120.21381 * 208.99061 * 9 7 2 11 11 C 1.37647 * 119.88514 * 179.97438 * 10 9 7 12 12 C 1.38529 * 120.31733 * 359.72374 * 11 10 9 13 13 C 1.39244 * 120.43173 * 0.55088 * 12 11 10 14 14 N 1.39963 * 119.95022 * 179.72201 * 13 12 11 15 15 C 1.34775 * 119.99670 * 323.86688 * 14 13 12 16 16 O 1.21582 * 120.00061 * 4.67713 * 15 14 13 17 17 N 1.34780 * 119.99710 * 184.68075 * 15 14 13 18 18 C 1.47145 * 120.98051 * 355.23681 * 17 15 14 19 19 C 1.53290 * 108.38712 * 129.44493 * 18 17 15 20 20 O 1.42962 * 109.26772 * 52.27078 * 19 18 17 21 21 C 1.42962 * 114.17110 * 297.50527 * 20 19 18 22 22 H 1.08999 * 109.47064 * 302.57724 * 21 20 19 23 23 C 1.52996 * 109.55286 * 182.46654 * 21 20 19 24 24 C 1.53785 * 113.60916 * 159.31580 * 23 21 20 25 25 C 1.53954 * 87.01742 * 220.04952 * 24 23 21 26 26 C 1.53780 * 87.11194 * 25.36574 * 25 24 23 27 27 C 1.47147 * 120.98135 * 175.21320 * 17 15 14 28 28 C 1.38277 * 120.10810 * 359.45440 * 13 12 11 29 29 H 0.97000 * 119.99905 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.05780 * 0.02562 * 10 9 7 31 31 H 1.07995 * 119.83776 * 179.97438 * 11 10 9 32 32 H 1.08007 * 119.78454 * 180.30127 * 12 11 10 33 33 H 0.96993 * 119.99939 * 143.86071 * 14 13 12 34 34 H 1.08995 * 109.68648 * 9.71486 * 18 17 15 35 35 H 1.09007 * 109.67980 * 249.16292 * 18 17 15 36 36 H 1.09004 * 109.51779 * 172.22170 * 19 18 17 37 37 H 1.08999 * 109.51126 * 292.32556 * 19 18 17 38 38 H 1.08994 * 112.85327 * 290.50981 * 23 21 20 39 39 H 1.09002 * 113.61720 * 334.56628 * 24 23 21 40 40 H 1.08995 * 113.61520 * 105.47745 * 24 23 21 41 41 H 1.09003 * 113.54195 * 270.81009 * 25 24 23 42 42 H 1.09009 * 113.66563 * 139.93255 * 25 24 23 43 43 H 1.09010 * 113.61280 * 220.09078 * 26 25 24 44 44 H 1.08997 * 113.69494 * 89.20000 * 26 25 24 45 45 H 1.09007 * 109.68647 * 350.27828 * 27 17 15 46 46 H 1.08997 * 109.68355 * 110.83235 * 27 17 15 47 47 H 1.07994 * 120.16355 * 180.24925 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3965 -1.2124 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0750 -1.2194 0.1664 9 6 1.3180 -2.4266 -0.2194 10 6 1.7955 -3.6242 0.3457 11 6 1.1182 -4.8028 0.1287 12 6 -0.0350 -4.8155 -0.6388 13 6 -0.5159 -3.6396 -1.2087 14 7 -1.6788 -3.6650 -1.9872 15 6 -1.9351 -4.7235 -2.7811 16 8 -1.2014 -5.6928 -2.7578 17 7 -3.0047 -4.7076 -3.6010 18 6 -3.9643 -3.5924 -3.5725 19 6 -4.1690 -3.0938 -5.0075 20 8 -4.5061 -4.2001 -5.8478 21 6 -3.4865 -5.1981 -5.9389 22 1 -2.5646 -4.7435 -6.3016 23 6 -3.9302 -6.2965 -6.9071 24 6 -2.7661 -7.1310 -7.4671 25 6 -3.5002 -7.0994 -8.8200 26 6 -4.1616 -5.7958 -8.3425 27 6 -3.2471 -5.8045 -4.5514 28 6 0.1505 -2.4457 -1.0023 29 1 -0.4850 0.8400 -0.0004 30 1 2.6911 -3.6183 0.9491 31 1 1.4854 -5.7212 0.5623 32 1 -0.5623 -5.7443 -0.7995 33 1 -2.3001 -2.9210 -1.9553 34 1 -3.5704 -2.7847 -2.9558 35 1 -4.9148 -3.9364 -3.1644 36 1 -4.9769 -2.3623 -5.0271 37 1 -3.2499 -2.6308 -5.3665 38 1 -4.7508 -6.8985 -6.5170 39 1 -1.8134 -6.6015 -7.4748 40 1 -2.6942 -8.1275 -7.0316 41 1 -4.2027 -7.9221 -8.9535 42 1 -2.8370 -6.9649 -9.6746 43 1 -5.2147 -5.7160 -8.6127 44 1 -3.5923 -4.8997 -8.5895 45 1 -2.3779 -6.4616 -4.5831 46 1 -4.1252 -6.3712 -4.2419 47 1 -0.2240 -1.5324 -1.4406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333902607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:16 Heat of formation + Delta-G solvation = -21.673758 kcal Electronic energy + Delta-G solvation = -28245.760870 eV Core-core repulsion = 24394.249253 eV Total energy + Delta-G solvation = -3851.511616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.65937 -39.42566 -38.03568 -37.15348 -34.64685 -34.34372 -33.22830 -31.69409 -29.51687 -28.78348 -27.77755 -25.99139 -25.35667 -25.16561 -23.47744 -22.00516 -21.17867 -20.68090 -19.78677 -19.18644 -18.19293 -17.42414 -16.70560 -16.18156 -15.85945 -15.50459 -15.33265 -15.24708 -14.92561 -14.62691 -14.47451 -14.12507 -13.63625 -13.52756 -12.95383 -12.81027 -12.73271 -12.66507 -12.36722 -12.23828 -11.99858 -11.63281 -11.54183 -11.20870 -11.12065 -11.08821 -10.76620 -10.75614 -10.65407 -10.56565 -10.40379 -10.20317 -9.99185 -9.72668 -9.53894 -9.21773 -8.97639 -8.50643 -7.31400 -6.98626 -6.63726 -4.37435 2.64474 2.79709 2.90575 3.07664 3.13350 3.22815 3.42773 3.61456 3.95301 4.14726 4.30802 4.41251 4.54372 4.62031 4.68208 4.73105 4.87677 4.91808 4.95943 5.08092 5.20911 5.43022 5.47466 5.52102 5.53514 5.58117 5.61469 5.67056 5.69380 5.77518 5.82972 5.98436 6.24111 6.26101 6.39152 6.68536 6.70975 6.82122 6.96399 6.98573 7.08447 7.22070 7.33497 7.65129 7.81621 7.98329 8.06257 8.25997 8.40165 8.61824 8.91072 8.91358 9.02266 10.24880 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016317 B = 0.002756 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.571707 B =10156.090430 C =10940.577489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.118 3.882 10 C -0.223 4.223 11 C -0.091 4.091 12 C -0.220 4.220 13 C 0.156 3.844 14 N -0.677 5.677 15 C 0.705 3.295 16 O -0.571 6.571 17 N -0.638 5.638 18 C 0.075 3.925 19 C 0.049 3.951 20 O -0.374 6.374 21 C 0.087 3.913 22 H 0.063 0.937 23 C -0.101 4.101 24 C -0.133 4.133 25 C -0.144 4.144 26 C -0.125 4.125 27 C 0.106 3.894 28 C -0.176 4.176 29 H 0.276 0.724 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.397 0.603 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.102 0.898 46 H 0.069 0.931 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.544 -5.973 -13.505 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.115 3.885 10 C -0.243 4.243 11 C -0.110 4.110 12 C -0.241 4.241 13 C 0.064 3.936 14 N -0.325 5.325 15 C 0.408 3.592 16 O -0.447 6.447 17 N -0.378 5.378 18 C -0.049 4.049 19 C -0.028 4.028 20 O -0.293 6.293 21 C 0.029 3.971 22 H 0.081 0.919 23 C -0.120 4.120 24 C -0.171 4.171 25 C -0.182 4.182 26 C -0.163 4.163 27 C -0.018 4.018 28 C -0.197 4.197 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.125 0.875 33 H 0.233 0.767 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.120 0.880 46 H 0.087 0.913 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.372 -6.535 -13.581 18.880 hybrid contribution 0.138 1.366 0.359 1.419 sum -11.234 -5.169 -13.221 18.103 Atomic orbital electron populations 1.69794 1.07365 1.28567 1.37924 1.25844 0.94839 1.01072 0.92406 0.86243 0.80870 0.81070 0.78377 1.18538 1.19939 1.20087 1.19545 0.95798 0.90298 1.43763 0.90457 1.17369 0.90888 0.92202 0.88019 1.21098 1.03041 0.93467 1.06699 1.20452 0.95486 0.96535 0.98506 1.20490 1.00974 0.96729 1.05884 1.17466 0.86734 0.95373 0.94052 1.42757 1.24573 1.20598 1.44560 1.15853 0.80684 0.83724 0.78983 1.90902 1.49502 1.33609 1.70734 1.47310 1.25975 1.23665 1.40801 1.22326 0.93877 0.90222 0.98447 1.22949 1.01863 0.88915 0.89118 1.87931 1.41845 1.31897 1.67588 1.22571 0.91079 0.89115 0.94382 0.91860 1.22524 0.99451 0.95862 0.94196 1.22976 0.97433 1.00350 0.96327 1.22876 0.99747 0.98283 0.97249 1.22778 1.01183 0.97444 0.94849 1.22083 1.03032 0.89295 0.87372 1.21109 0.99018 0.95244 1.04372 0.91301 0.88830 0.89016 0.87490 0.76672 0.89295 0.90519 0.87597 0.92514 0.88450 0.89750 0.90910 0.90173 0.91375 0.91342 0.90094 0.88004 0.91265 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.36 10.83 55.55 0.60 -19.76 16 2 C 0.07 1.83 5.26 -17.34 -0.09 1.74 16 3 Si 0.91 18.61 29.57 -169.99 -5.03 13.59 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.46 -12.26 9.06 -37.74 -0.34 -12.60 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 9 C 0.12 3.16 5.55 -106.85 -0.59 2.57 16 10 C -0.22 -5.60 9.79 -38.84 -0.38 -5.98 16 11 C -0.09 -2.16 10.02 -39.69 -0.40 -2.56 16 12 C -0.22 -5.35 8.70 -39.10 -0.34 -5.69 16 13 C 0.16 3.72 6.27 -83.76 -0.53 3.19 16 14 N -0.68 -13.31 5.25 -14.27 -0.07 -13.38 16 15 C 0.71 13.50 8.15 -86.92 -0.71 12.79 16 16 O -0.57 -12.91 13.32 5.29 0.07 -12.84 16 17 N -0.64 -9.31 3.02 -178.01 -0.54 -9.85 16 18 C 0.08 0.84 6.63 -3.54 -0.02 0.82 16 19 C 0.05 0.49 6.98 37.31 0.26 0.75 16 20 O -0.37 -4.21 10.22 -35.23 -0.36 -4.57 16 21 C 0.09 0.96 2.52 -26.58 -0.07 0.89 16 22 H 0.06 0.76 7.98 -51.93 -0.41 0.34 16 23 C -0.10 -0.91 3.35 -89.81 -0.30 -1.21 16 24 C -0.13 -1.10 7.63 -25.83 -0.20 -1.30 16 25 C -0.14 -1.04 8.09 -25.83 -0.21 -1.25 16 26 C -0.13 -1.03 7.48 -25.92 -0.19 -1.22 16 27 C 0.11 1.35 5.89 -3.53 -0.02 1.33 16 28 C -0.18 -4.50 8.57 -38.68 -0.33 -4.83 16 29 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 30 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 31 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 32 H 0.11 2.62 6.28 -52.48 -0.33 2.29 16 33 H 0.40 6.67 6.33 -40.82 -0.26 6.41 16 34 H 0.09 0.95 5.66 -51.93 -0.29 0.65 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.74 7.99 -51.93 -0.41 0.33 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 43 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 44 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 45 H 0.10 1.44 7.12 -51.92 -0.37 1.07 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.12 3.19 6.22 -52.49 -0.33 2.87 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -30.63 374.69 -11.17 -41.80 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -7.03 Total: 11.94 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -4.46 Total: -12.56 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.01 Total: -42.99 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.29 Total: -17.41 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.63 -11.17 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333902607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.122 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds