Wall clock time and date at job start Tue Mar 31 2020 15:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48505 * 109.46866 * 240.00353 * 3 2 1 5 5 H 1.48505 * 109.46897 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47034 * 120.00487 * 3 2 1 7 7 C 1.39937 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99634 * 185.44346 * 7 2 1 9 9 C 1.41401 * 119.99939 * 5.43700 * 7 2 1 10 10 C 1.40779 * 120.21615 * 34.59168 * 9 7 2 11 11 C 1.37639 * 119.88615 * 180.29442 * 10 9 7 12 12 C 1.38531 * 120.32068 * 359.47411 * 11 10 9 13 13 C 1.39244 * 120.43014 * 0.23021 * 12 11 10 14 14 N 1.39954 * 119.94791 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00388 * 145.34737 * 14 13 12 16 16 O 1.21588 * 119.99386 * 354.30584 * 15 14 13 17 17 N 1.34777 * 120.00119 * 174.29570 * 15 14 13 18 18 C 1.47152 * 121.01935 * 4.69764 * 17 15 14 19 19 C 1.52862 * 108.69785 * 230.84217 * 18 17 15 20 20 O 1.43029 * 109.29626 * 307.56705 * 19 18 17 21 21 C 1.42559 * 114.23071 * 61.71984 * 20 19 18 22 22 C 1.53967 * 109.87102 * 59.59748 * 21 20 19 23 23 C 1.54959 * 104.11998 * 96.03715 * 22 21 20 24 24 C 1.54920 * 102.78475 * 37.68933 * 23 22 21 25 25 C 1.53563 * 110.11552 * 177.10149 * 21 20 19 26 26 C 1.47228 * 121.01595 * 184.97638 * 17 15 14 27 27 C 1.38279 * 120.10726 * 0.04757 * 13 12 11 28 28 H 0.96998 * 120.00234 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.05252 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.83726 * 179.75157 * 11 10 9 31 31 H 1.08002 * 119.78526 * 180.26009 * 12 11 10 32 32 H 0.97005 * 120.00065 * 325.34540 * 14 13 12 33 33 H 1.09002 * 109.63317 * 350.59422 * 18 17 15 34 34 H 1.09000 * 109.63455 * 111.19743 * 18 17 15 35 35 H 1.09002 * 109.58440 * 187.55593 * 19 18 17 36 36 H 1.09002 * 109.41415 * 67.47457 * 19 18 17 37 37 H 1.09003 * 110.49623 * 214.69185 * 22 21 20 38 38 H 1.08997 * 110.50163 * 337.37093 * 22 21 20 39 39 H 1.09004 * 110.74606 * 279.37052 * 23 22 21 40 40 H 1.08993 * 110.90690 * 156.08646 * 23 22 21 41 41 H 1.09001 * 110.48579 * 203.55754 * 24 23 22 42 42 H 1.08997 * 110.59500 * 80.97090 * 24 23 22 43 43 H 1.09002 * 110.05419 * 359.88352 * 25 21 20 44 44 H 1.09000 * 110.05913 * 121.31913 * 25 21 20 45 45 H 1.08997 * 109.67940 * 249.78823 * 26 17 15 46 46 H 1.09000 * 109.68142 * 10.29903 * 26 17 15 47 47 H 1.07994 * 120.16204 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0960 1.6963 -1.2126 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6963 1.2124 7 6 2.0079 -1.2119 -0.0005 8 1 3.0843 -1.2141 0.0882 9 6 1.3056 -2.4336 -0.1171 10 6 0.1451 -2.5108 -0.9103 11 6 -0.5366 -3.7020 -1.0141 12 6 -0.0804 -4.8291 -0.3503 13 6 1.0694 -4.7693 0.4328 14 7 1.5216 -5.9143 1.0985 15 6 2.8437 -6.1272 1.2511 16 8 3.6446 -5.3808 0.7222 17 7 3.2779 -7.1673 1.9901 18 6 2.3325 -8.1431 2.5553 19 6 2.6266 -8.3032 4.0468 20 8 4.0148 -8.5973 4.2259 21 6 4.8939 -7.5741 3.7647 22 6 4.6080 -6.2608 4.5158 23 6 5.6469 -6.2491 5.6656 24 6 6.9065 -6.8530 4.9957 25 6 6.3508 -7.9537 4.0672 26 6 4.7122 -7.3586 2.2617 27 6 1.7649 -3.5803 0.5541 28 1 -0.4850 0.8400 0.0004 29 1 -0.2120 -1.6358 -1.4329 30 1 -1.4291 -3.7593 -1.6196 31 1 -0.6197 -5.7604 -0.4413 32 1 0.8835 -6.5547 1.4502 33 1 1.3120 -7.7845 2.4207 34 1 2.4552 -9.1039 2.0553 35 1 2.0266 -9.1179 4.4521 36 1 2.3808 -7.3768 4.5660 37 1 4.7571 -5.4046 3.8579 38 1 3.5946 -6.2633 4.9169 39 1 5.3130 -6.8738 6.4940 40 1 5.8402 -5.2314 6.0046 41 1 7.5677 -7.2854 5.7466 42 1 7.4331 -6.0951 4.4159 43 1 6.3886 -8.9205 4.5692 44 1 6.9272 -7.9902 3.1428 45 1 5.0754 -8.2314 1.7191 46 1 5.2665 -6.4742 1.9474 47 1 2.6566 -3.5329 1.1616 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334981663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:10 Heat of formation + Delta-G solvation = -43.131977 kcal Electronic energy + Delta-G solvation = -28856.401302 eV Core-core repulsion = 25003.959188 eV Total energy + Delta-G solvation = -3852.442114 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95173 -39.40322 -37.31456 -36.39114 -34.62221 -34.46336 -32.95824 -31.08212 -29.77122 -28.99818 -28.69030 -27.48119 -25.28410 -24.96612 -23.53280 -21.47373 -20.91742 -20.78843 -19.72942 -19.09635 -18.31855 -17.41606 -16.88682 -16.09991 -15.83163 -15.45342 -15.31040 -15.05382 -14.73540 -14.53473 -14.30941 -13.87001 -13.73575 -13.62327 -13.22896 -13.01463 -12.83391 -12.23824 -12.14936 -11.77969 -11.72197 -11.60856 -11.50202 -11.29617 -11.16039 -11.08219 -11.00977 -10.92877 -10.74633 -10.65164 -10.45334 -10.18468 -10.03304 -9.67066 -9.43921 -9.20327 -8.96772 -8.47516 -7.34541 -6.87124 -6.58331 -4.32504 2.61867 2.81584 2.95466 3.12525 3.16913 3.23285 3.46765 3.65209 4.02125 4.08667 4.32969 4.39448 4.57449 4.69285 4.74655 4.81495 4.88254 4.96450 5.20757 5.23837 5.36459 5.40571 5.46229 5.51414 5.62925 5.64816 5.70397 5.71294 5.72311 5.88384 5.89407 6.07379 6.17493 6.22378 6.35584 6.37746 6.76758 6.79005 7.03642 7.04880 7.11791 7.24659 7.33828 7.68869 7.78900 7.98245 8.15302 8.25482 8.37585 8.70421 8.90743 9.01387 9.03025 10.35637 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014070 B = 0.003298 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.634489 B = 8486.951628 C = 9903.938705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.122 3.878 10 C -0.159 4.159 11 C -0.096 4.096 12 C -0.252 4.252 13 C 0.162 3.838 14 N -0.681 5.681 15 C 0.705 3.295 16 O -0.562 6.562 17 N -0.635 5.635 18 C 0.077 3.923 19 C 0.043 3.957 20 O -0.368 6.368 21 C 0.101 3.899 22 C -0.149 4.149 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.108 4.108 26 C 0.113 3.887 27 C -0.200 4.200 28 H 0.278 0.722 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.392 0.608 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.104 0.896 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.184 -15.463 9.879 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.119 3.881 10 C -0.178 4.178 11 C -0.115 4.115 12 C -0.274 4.274 13 C 0.070 3.930 14 N -0.329 5.329 15 C 0.407 3.593 16 O -0.437 6.437 17 N -0.375 5.375 18 C -0.047 4.047 19 C -0.034 4.034 20 O -0.287 6.287 21 C 0.061 3.939 22 C -0.186 4.186 23 C -0.158 4.158 24 C -0.161 4.161 25 C -0.146 4.146 26 C -0.010 4.010 27 C -0.221 4.221 28 H 0.089 0.911 29 H 0.136 0.864 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.228 0.772 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.122 0.878 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.664 -14.907 9.576 18.930 hybrid contribution -0.368 0.534 0.101 0.656 sum 6.295 -14.373 9.677 18.436 Atomic orbital electron populations 1.69769 1.07254 1.28852 1.38026 1.25829 0.94861 1.00942 0.92516 0.86320 0.79892 0.80301 0.79841 1.18970 1.20460 1.19167 1.19485 0.94890 0.90035 1.45183 0.90599 1.17491 0.91261 0.91590 0.87736 1.21363 0.98627 0.96254 1.01602 1.20477 0.98526 0.93300 0.99242 1.20064 1.01338 0.98183 1.07819 1.17258 0.95870 0.84322 0.95511 1.42750 1.05007 1.25090 1.60062 1.15816 0.83130 0.80796 0.79553 1.90971 1.53779 1.47662 1.51289 1.47297 1.07112 1.27492 1.55619 1.22200 0.93777 0.93609 0.95112 1.22942 0.83398 1.02324 0.94767 1.87926 1.15172 1.42771 1.82794 1.22313 0.90913 0.88038 0.92611 1.22960 1.00043 0.97599 0.98000 1.22460 0.94940 1.00920 0.97510 1.22381 0.97558 0.97736 0.98413 1.22074 0.91896 1.00083 1.00564 1.22155 0.81064 1.03325 0.94475 1.21103 1.03267 0.91809 1.05956 0.91136 0.86424 0.88931 0.89308 0.77201 0.89573 0.90631 0.87693 0.92042 0.90183 0.90899 0.91438 0.91369 0.91338 0.91172 0.90117 0.90403 0.91351 0.87823 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.59 10.98 55.55 0.61 -20.98 16 2 C 0.07 1.92 5.31 -17.34 -0.09 1.83 16 3 Si 0.91 19.58 29.56 -169.99 -5.03 14.55 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.47 -12.98 9.04 -37.74 -0.34 -13.32 16 8 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 9 C 0.12 3.39 5.50 -106.85 -0.59 2.81 16 10 C -0.16 -4.20 8.62 -38.84 -0.33 -4.53 16 11 C -0.10 -2.26 10.02 -39.69 -0.40 -2.66 16 12 C -0.25 -5.58 9.97 -39.10 -0.39 -5.97 16 13 C 0.16 3.73 6.25 -83.76 -0.52 3.20 16 14 N -0.68 -12.53 5.25 -14.27 -0.07 -12.60 16 15 C 0.70 13.24 8.03 -86.92 -0.70 12.54 16 16 O -0.56 -13.05 13.64 5.29 0.07 -12.98 16 17 N -0.64 -8.95 2.86 -178.43 -0.51 -9.46 16 18 C 0.08 0.79 6.59 -3.76 -0.02 0.76 16 19 C 0.04 0.40 6.70 37.09 0.25 0.65 16 20 O -0.37 -4.06 10.14 -35.23 -0.36 -4.42 16 21 C 0.10 1.12 0.98 -89.86 -0.09 1.03 16 22 C -0.15 -1.73 5.70 -25.19 -0.14 -1.88 16 23 C -0.12 -1.16 6.91 -24.68 -0.17 -1.33 16 24 C -0.12 -1.05 6.84 -25.01 -0.17 -1.22 16 25 C -0.11 -0.98 6.27 -25.73 -0.16 -1.14 16 26 C 0.11 1.45 4.96 -3.68 -0.02 1.43 16 27 C -0.20 -5.25 8.39 -38.68 -0.32 -5.57 16 28 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 29 H 0.12 3.20 6.49 -52.49 -0.34 2.86 16 30 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.39 5.67 6.33 -40.82 -0.26 5.41 16 33 H 0.09 0.77 5.66 -51.93 -0.29 0.48 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.61 5.97 -51.93 -0.31 0.30 16 37 H 0.08 1.10 7.69 -51.93 -0.40 0.70 16 38 H 0.07 0.88 5.74 -51.93 -0.30 0.58 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.71 7.95 -51.93 -0.41 0.29 16 44 H 0.08 0.64 7.66 -51.93 -0.40 0.24 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.10 1.51 6.92 -51.93 -0.36 1.15 16 47 H 0.11 2.90 6.52 -52.49 -0.34 2.56 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -31.90 366.01 -10.75 -42.65 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -6.76 Total: 11.09 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -4.22 Total: -13.37 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.03 Total: -43.04 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.29 Total: -17.39 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.90 -10.75 -42.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334981663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.481 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds