Wall clock time and date at job start Tue Mar 31 2020 15:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48505 * 109.46866 * 240.00353 * 3 2 1 5 5 H 1.48505 * 109.46897 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47034 * 120.00487 * 3 2 1 7 7 C 1.39937 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99634 * 185.44346 * 7 2 1 9 9 C 1.41401 * 119.99939 * 5.43700 * 7 2 1 10 10 C 1.40779 * 120.21615 * 34.59168 * 9 7 2 11 11 C 1.37639 * 119.88615 * 180.29442 * 10 9 7 12 12 C 1.38531 * 120.32068 * 359.47411 * 11 10 9 13 13 C 1.39244 * 120.43014 * 0.23021 * 12 11 10 14 14 N 1.39954 * 119.94791 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00388 * 145.34737 * 14 13 12 16 16 O 1.21588 * 119.99386 * 354.30584 * 15 14 13 17 17 N 1.34777 * 120.00119 * 174.29570 * 15 14 13 18 18 C 1.47152 * 121.01935 * 4.69764 * 17 15 14 19 19 C 1.52862 * 108.69785 * 230.84217 * 18 17 15 20 20 O 1.43029 * 109.29626 * 307.56705 * 19 18 17 21 21 C 1.42559 * 114.23071 * 61.71984 * 20 19 18 22 22 C 1.53967 * 109.87102 * 59.59748 * 21 20 19 23 23 C 1.54959 * 104.11998 * 96.03715 * 22 21 20 24 24 C 1.54920 * 102.78475 * 37.68933 * 23 22 21 25 25 C 1.53563 * 110.11552 * 177.10149 * 21 20 19 26 26 C 1.47228 * 121.01595 * 184.97638 * 17 15 14 27 27 C 1.38279 * 120.10726 * 0.04757 * 13 12 11 28 28 H 0.96998 * 120.00234 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.05252 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.83726 * 179.75157 * 11 10 9 31 31 H 1.08002 * 119.78526 * 180.26009 * 12 11 10 32 32 H 0.97005 * 120.00065 * 325.34540 * 14 13 12 33 33 H 1.09002 * 109.63317 * 350.59422 * 18 17 15 34 34 H 1.09000 * 109.63455 * 111.19743 * 18 17 15 35 35 H 1.09002 * 109.58440 * 187.55593 * 19 18 17 36 36 H 1.09002 * 109.41415 * 67.47457 * 19 18 17 37 37 H 1.09003 * 110.49623 * 214.69185 * 22 21 20 38 38 H 1.08997 * 110.50163 * 337.37093 * 22 21 20 39 39 H 1.09004 * 110.74606 * 279.37052 * 23 22 21 40 40 H 1.08993 * 110.90690 * 156.08646 * 23 22 21 41 41 H 1.09001 * 110.48579 * 203.55754 * 24 23 22 42 42 H 1.08997 * 110.59500 * 80.97090 * 24 23 22 43 43 H 1.09002 * 110.05419 * 359.88352 * 25 21 20 44 44 H 1.09000 * 110.05913 * 121.31913 * 25 21 20 45 45 H 1.08997 * 109.67940 * 249.78823 * 26 17 15 46 46 H 1.09000 * 109.68142 * 10.29903 * 26 17 15 47 47 H 1.07994 * 120.16204 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0960 1.6963 -1.2126 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6963 1.2124 7 6 2.0079 -1.2119 -0.0005 8 1 3.0843 -1.2141 0.0882 9 6 1.3056 -2.4336 -0.1171 10 6 0.1451 -2.5108 -0.9103 11 6 -0.5366 -3.7020 -1.0141 12 6 -0.0804 -4.8291 -0.3503 13 6 1.0694 -4.7693 0.4328 14 7 1.5216 -5.9143 1.0985 15 6 2.8437 -6.1272 1.2511 16 8 3.6446 -5.3808 0.7222 17 7 3.2779 -7.1673 1.9901 18 6 2.3325 -8.1431 2.5553 19 6 2.6266 -8.3032 4.0468 20 8 4.0148 -8.5973 4.2259 21 6 4.8939 -7.5741 3.7647 22 6 4.6080 -6.2608 4.5158 23 6 5.6469 -6.2491 5.6656 24 6 6.9065 -6.8530 4.9957 25 6 6.3508 -7.9537 4.0672 26 6 4.7122 -7.3586 2.2617 27 6 1.7649 -3.5803 0.5541 28 1 -0.4850 0.8400 0.0004 29 1 -0.2120 -1.6358 -1.4329 30 1 -1.4291 -3.7593 -1.6196 31 1 -0.6197 -5.7604 -0.4413 32 1 0.8835 -6.5547 1.4502 33 1 1.3120 -7.7845 2.4207 34 1 2.4552 -9.1039 2.0553 35 1 2.0266 -9.1179 4.4521 36 1 2.3808 -7.3768 4.5660 37 1 4.7571 -5.4046 3.8579 38 1 3.5946 -6.2633 4.9169 39 1 5.3130 -6.8738 6.4940 40 1 5.8402 -5.2314 6.0046 41 1 7.5677 -7.2854 5.7466 42 1 7.4331 -6.0951 4.4159 43 1 6.3886 -8.9205 4.5692 44 1 6.9272 -7.9902 3.1428 45 1 5.0754 -8.2314 1.7191 46 1 5.2665 -6.4742 1.9474 47 1 2.6566 -3.5329 1.1616 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334981663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:09 Heat of formation + Delta-G solvation = -61.996817 kcal Electronic energy + Delta-G solvation = -28857.219343 eV Core-core repulsion = 25003.959188 eV Total energy + Delta-G solvation = -3853.260155 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.11203 -40.71700 -39.07135 -37.30627 -36.23623 -35.80391 -34.77618 -32.00459 -31.73252 -30.26759 -29.76646 -28.73939 -27.24557 -26.03998 -24.52469 -23.12542 -22.73486 -21.69027 -21.03510 -20.17687 -19.85430 -19.02973 -17.89562 -17.47878 -17.19352 -16.90141 -16.48854 -16.35510 -16.26896 -16.03835 -15.48557 -15.12420 -14.78204 -14.75842 -14.70028 -14.49964 -14.05593 -13.97033 -13.57837 -13.20867 -12.98940 -12.91565 -12.82787 -12.58732 -12.53836 -12.35809 -12.19495 -12.05297 -12.03137 -11.80941 -11.64978 -11.52787 -11.44847 -11.23072 -11.05865 -11.02678 -10.78968 -9.61672 -9.32315 -8.72900 -8.52434 -6.40777 0.89495 0.99646 1.35381 1.43215 1.47418 1.50145 2.09085 2.22406 2.65910 2.77070 2.81875 3.45627 3.55788 3.67575 3.69276 3.85167 3.98235 4.07161 4.18950 4.35086 4.41129 4.45374 4.47635 4.56559 4.59290 4.64201 4.68771 4.78405 4.78726 4.88376 4.99006 5.00499 5.04348 5.08346 5.09352 5.11705 5.15534 5.23151 5.31189 5.37854 5.42479 5.64872 5.80507 5.96780 6.05615 6.12462 6.18695 6.36626 6.68332 6.85734 6.94858 7.00309 7.48005 8.41331 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014070 B = 0.003298 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.634489 B = 8486.951628 C = 9903.938705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.266 1.266 7 C -0.510 4.510 8 H 0.059 0.941 9 C 0.091 3.909 10 C -0.183 4.183 11 C -0.093 4.093 12 C -0.239 4.239 13 C 0.170 3.830 14 N -0.669 5.669 15 C 0.700 3.300 16 O -0.615 6.615 17 N -0.626 5.626 18 C 0.070 3.930 19 C 0.042 3.958 20 O -0.370 6.370 21 C 0.109 3.891 22 C -0.152 4.152 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.106 4.106 26 C 0.109 3.891 27 C -0.225 4.225 28 H 0.286 0.714 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.414 0.586 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.141 0.859 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.400 -17.917 10.847 21.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.190 1.190 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.089 3.911 10 C -0.203 4.203 11 C -0.112 4.112 12 C -0.260 4.260 13 C 0.076 3.924 14 N -0.320 5.320 15 C 0.402 3.598 16 O -0.494 6.494 17 N -0.365 5.365 18 C -0.052 4.052 19 C -0.035 4.035 20 O -0.288 6.288 21 C 0.068 3.932 22 C -0.189 4.189 23 C -0.155 4.155 24 C -0.158 4.158 25 C -0.144 4.144 26 C -0.014 4.014 27 C -0.247 4.247 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.254 0.746 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.159 0.841 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.853 -17.448 10.588 21.232 hybrid contribution -0.174 1.104 -0.168 1.131 sum 5.678 -16.344 10.420 20.198 Atomic orbital electron populations 1.69816 1.08403 1.30202 1.38054 1.26618 0.95766 1.03886 0.91412 0.85266 0.78731 0.75969 0.79744 1.18638 1.18460 1.19034 1.19650 0.94439 0.91774 1.48209 0.92237 1.17801 0.92395 0.92199 0.88714 1.21314 0.99196 0.97287 1.02544 1.20860 0.98979 0.92391 0.98934 1.20504 1.00456 0.99471 1.05575 1.17316 0.95476 0.84566 0.95022 1.42490 1.05547 1.24227 1.59723 1.16028 0.82705 0.81350 0.79719 1.90943 1.55040 1.49879 1.53544 1.47327 1.08434 1.26637 1.54052 1.22569 0.93487 0.93321 0.95824 1.23132 0.83013 1.03426 0.93947 1.87933 1.15902 1.42415 1.82598 1.22255 0.92335 0.87781 0.90813 1.22929 1.00567 0.97001 0.98436 1.22459 0.94810 1.01291 0.96968 1.22392 0.97233 0.97528 0.98689 1.22107 0.90420 1.00628 1.01200 1.22299 0.80124 1.02688 0.96284 1.21027 1.03350 0.93404 1.06941 0.90307 0.87983 0.85507 0.84764 0.74573 0.88134 0.88435 0.84141 0.92934 0.93448 0.91438 0.90419 0.91505 0.89283 0.91636 0.88974 0.89662 0.89734 0.90511 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.83 10.98 21.82 0.24 -45.59 16 2 C 0.04 1.94 5.31 85.25 0.45 2.39 16 3 Si 0.98 41.33 29.56 68.60 2.03 43.36 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.51 -30.34 9.04 23.46 0.21 -30.13 16 8 H 0.06 3.57 7.85 -2.91 -0.02 3.54 16 9 C 0.09 5.37 5.50 -21.31 -0.12 5.25 16 10 C -0.18 -9.99 8.62 22.75 0.20 -9.79 16 11 C -0.09 -4.24 10.02 22.20 0.22 -4.01 16 12 C -0.24 -10.01 9.97 22.58 0.23 -9.79 16 13 C 0.17 7.79 6.25 38.10 0.24 8.03 16 14 N -0.67 -24.07 5.25 -317.32 -1.67 -25.73 16 15 C 0.70 26.68 8.03 179.05 1.44 28.12 16 16 O -0.61 -30.21 13.64 -3.99 -0.05 -30.27 16 17 N -0.63 -17.24 2.86 -836.70 -2.39 -19.63 16 18 C 0.07 1.23 6.59 86.21 0.57 1.80 16 19 C 0.04 0.66 6.70 71.94 0.48 1.14 16 20 O -0.37 -7.20 10.14 -148.98 -1.51 -8.71 16 21 C 0.11 2.29 0.98 -10.30 -0.01 2.28 16 22 C -0.15 -3.62 5.70 31.59 0.18 -3.44 16 23 C -0.12 -2.19 6.91 31.92 0.22 -1.97 16 24 C -0.12 -1.91 6.84 31.71 0.22 -1.69 16 25 C -0.11 -1.74 6.27 31.24 0.20 -1.54 16 26 C 0.11 2.79 4.96 86.21 0.43 3.22 16 27 C -0.23 -12.48 8.39 22.85 0.19 -12.29 16 28 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 29 H 0.10 5.77 6.49 -2.91 -0.02 5.75 16 30 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 31 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 32 H 0.41 10.88 6.33 -92.70 -0.59 10.29 16 33 H 0.10 1.46 5.66 -2.39 -0.01 1.45 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.05 0.94 5.97 -2.39 -0.01 0.93 16 37 H 0.05 1.43 7.69 -2.39 -0.02 1.41 16 38 H 0.07 1.64 5.74 -2.39 -0.01 1.63 16 39 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.09 1.35 7.95 -2.39 -0.02 1.33 16 44 H 0.08 1.28 7.66 -2.39 -0.02 1.26 16 45 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.08 2.40 6.92 -2.39 -0.02 2.38 16 47 H 0.08 4.78 6.52 -2.91 -0.02 4.76 16 Total: -1.00 -74.71 366.01 2.39 -72.32 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: 0.41 Total: 36.69 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 5.34 Total: -22.43 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -3.82 Total: -90.95 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -1.57 Total: -38.98 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -74.71 2.39 -72.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334981663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.322 kcal (2) G-P(sol) polarization free energy of solvation -74.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds