Wall clock time and date at job start Tue Mar 31 2020 15:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38283 * 119.93076 * 2 1 4 4 C 1.38113 * 120.07274 * 180.02562 * 3 2 1 5 5 C 1.38870 * 119.92521 * 359.97438 * 4 3 2 6 6 N 1.39931 * 120.06754 * 179.97438 * 5 4 3 7 7 C 1.45749 * 117.95239 * 269.35633 * 6 5 4 8 8 C 1.52918 * 110.49249 * 160.92415 * 7 6 5 9 9 C 1.53351 * 108.67196 * 50.75099 * 8 7 6 10 10 C 1.53066 * 108.42611 * 292.47320 * 9 8 7 11 11 H 1.08998 * 109.40080 * 169.03177 * 10 9 8 12 12 N 1.46502 * 109.39917 * 288.76821 * 10 9 8 13 13 C 1.34779 * 120.00022 * 204.99990 * 12 10 9 14 14 O 1.21283 * 120.00042 * 0.02562 * 13 12 10 15 15 C 1.50697 * 119.99793 * 180.02562 * 13 12 10 16 16 C 1.53011 * 109.46970 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.46970 * 180.02562 * 16 15 13 18 18 H 1.08005 * 120.00279 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99587 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00100 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99817 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47165 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47043 * 119.99927 * 21 19 17 24 24 H 1.48493 * 109.47430 * 240.00098 * 21 19 17 25 25 C 1.33362 * 117.94289 * 89.33534 * 6 5 4 26 26 O 1.21281 * 118.24373 * 2.19965 * 25 6 5 27 27 C 1.38875 * 119.86507 * 0.27528 * 5 4 3 28 28 C 1.38112 * 119.92345 * 359.47218 * 27 5 4 29 29 H 1.09009 * 109.46663 * 89.99985 * 1 2 3 30 30 H 1.08999 * 109.46936 * 209.99581 * 1 2 3 31 31 H 1.09001 * 109.47171 * 330.00162 * 1 2 3 32 32 H 1.08001 * 119.96359 * 0.02562 * 3 2 1 33 33 H 1.08000 * 120.03482 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.29968 * 40.61150 * 7 6 5 35 35 H 1.08994 * 109.29897 * 281.23940 * 7 6 5 36 36 H 1.09004 * 109.59957 * 291.00168 * 8 7 6 37 37 H 1.08993 * 109.73895 * 170.58943 * 8 7 6 38 38 H 1.08998 * 109.67211 * 52.20328 * 9 8 7 39 39 H 1.08996 * 109.67461 * 172.73591 * 9 8 7 40 40 H 0.97002 * 120.00309 * 25.00841 * 12 10 9 41 41 H 1.08998 * 109.47622 * 299.99868 * 15 13 12 42 42 H 1.09000 * 109.47170 * 60.00456 * 15 13 12 43 43 H 1.08998 * 109.46859 * 300.00357 * 16 15 13 44 44 H 1.09000 * 109.46784 * 60.00241 * 16 15 13 45 45 H 0.97003 * 119.99609 * 180.02562 * 20 19 17 46 46 H 1.07992 * 120.03693 * 179.70032 * 27 5 4 47 47 H 1.07997 * 119.96287 * 180.25566 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2018 -0.0005 5 6 4.2739 0.0000 -0.0005 6 7 5.6732 0.0000 -0.0016 7 6 6.3554 -0.0151 -1.2895 8 6 7.8022 0.4549 -1.1344 9 6 8.4575 -0.3397 0.0018 10 6 7.7929 0.0640 1.3203 11 1 8.1040 -0.6226 2.1076 12 7 8.2021 1.4254 1.6746 13 6 8.1846 1.8204 2.9631 14 8 7.8306 1.0488 3.8292 15 6 8.6050 3.2210 3.3274 16 6 8.4927 3.4094 4.8417 17 6 8.9125 4.8102 5.2061 18 1 9.2274 5.4974 4.4347 19 6 8.8945 5.2143 6.5242 20 7 8.5105 4.3776 7.4633 21 14 9.4155 6.9504 6.9759 22 1 9.7995 7.6879 5.7455 23 1 8.2856 7.6495 7.6392 24 1 10.5749 6.8941 7.9020 25 6 6.2990 0.0142 1.1760 26 8 5.6256 -0.0147 2.1842 27 6 3.5781 -1.2019 -0.0058 28 6 2.1970 -1.1984 0.0000 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6553 2.1327 0.0004 33 1 4.1164 2.1381 -0.0010 34 1 5.8338 0.6465 -1.9812 35 1 6.3468 -1.0288 -1.6899 36 1 7.8176 1.5179 -0.8935 37 1 8.3468 0.2824 -2.0627 38 1 8.3167 -1.4071 -0.1683 39 1 9.5224 -0.1113 0.0426 40 1 8.4855 2.0425 0.9819 41 1 9.6370 3.3832 3.0163 42 1 7.9566 3.9377 2.8235 43 1 7.4606 3.2473 5.1525 44 1 9.1409 2.6927 5.3461 45 1 8.4975 4.6621 8.3906 46 1 4.1163 -2.1381 -0.0107 47 1 1.6553 -2.1327 0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292127708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:46 Heat of formation + Delta-G solvation = -50.605822 kcal Electronic energy + Delta-G solvation = -28053.007188 eV Core-core repulsion = 24200.240983 eV Total energy + Delta-G solvation = -3852.766205 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.27942 -39.42774 -38.45981 -36.69827 -35.35482 -33.40290 -32.98911 -31.36371 -31.15101 -30.85458 -29.04896 -26.81239 -25.74908 -24.32338 -23.08227 -22.90813 -21.90291 -21.22117 -19.78818 -18.91257 -17.61949 -16.90979 -16.77131 -16.25379 -15.79830 -15.67744 -15.60848 -15.10647 -14.70139 -14.45411 -14.38998 -13.95393 -13.91712 -13.69373 -13.64211 -13.43315 -13.25857 -12.66875 -12.49919 -12.21315 -12.15515 -12.12909 -11.83679 -11.59560 -11.51350 -11.28603 -11.21889 -11.11543 -10.92070 -10.55109 -10.07366 -9.91674 -9.61786 -9.13258 -9.11632 -9.02771 -8.96398 -8.82762 -8.66944 -8.28382 -5.91886 -3.96397 1.05264 1.22950 2.44534 2.72816 3.33237 3.35062 3.41618 3.44892 3.50038 3.63884 4.34779 4.38032 4.41442 4.50744 4.53311 4.64401 4.67113 4.80794 4.92801 5.08332 5.11180 5.21036 5.21543 5.30894 5.34492 5.42821 5.44751 5.48842 5.51310 5.57057 5.68433 5.70391 5.82444 5.85511 6.07709 6.25156 6.26209 6.34329 6.39055 6.41641 6.59414 6.88546 6.92150 7.24880 7.78540 7.82940 7.91852 8.12333 8.18499 8.42645 8.81866 9.12537 9.66806 11.19077 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.002788 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.679177 B =10040.886735 C =11408.771104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.112 4.112 4 C -0.103 4.103 5 C 0.132 3.868 6 N -0.570 5.570 7 C 0.117 3.883 8 C -0.137 4.137 9 C -0.133 4.133 10 C 0.141 3.859 11 H 0.118 0.882 12 N -0.732 5.732 13 C 0.506 3.494 14 O -0.509 6.509 15 C -0.126 4.126 16 C 0.036 3.964 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.888 5.888 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.502 3.498 26 O -0.504 6.504 27 C -0.105 4.105 28 C -0.114 4.114 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.399 0.601 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.024 0.976 44 H 0.024 0.976 45 H 0.260 0.740 46 H 0.122 0.878 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.247 -11.519 -26.395 29.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.131 4.131 4 C -0.123 4.123 5 C 0.043 3.957 6 N -0.304 5.304 7 C -0.005 4.005 8 C -0.175 4.175 9 C -0.171 4.171 10 C 0.032 3.968 11 H 0.136 0.864 12 N -0.390 5.390 13 C 0.295 3.705 14 O -0.381 6.381 15 C -0.166 4.166 16 C -0.001 4.001 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.527 5.527 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.288 3.712 26 O -0.374 6.374 27 C -0.124 4.124 28 C -0.133 4.133 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.234 0.766 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.070 0.930 46 H 0.140 0.860 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.837 -12.120 -24.933 29.097 hybrid contribution 0.433 1.243 -0.104 1.320 sum -8.404 -10.877 -25.037 28.562 Atomic orbital electron populations 1.20800 0.91037 1.03023 1.02232 1.19978 0.96231 0.93119 0.99201 1.20929 0.93519 0.97808 1.00824 1.21303 0.94415 0.97493 0.99048 1.17538 0.82924 0.93127 1.02122 1.45068 1.03804 1.74938 1.06544 1.21444 0.93028 1.01809 0.84227 1.21913 0.94516 1.00987 1.00042 1.22041 1.01142 1.01235 0.92678 1.20776 0.88917 0.88090 0.99017 0.86421 1.46190 1.70520 1.12751 1.09546 1.21690 0.76452 0.91358 0.81040 1.90731 1.44394 1.55090 1.47875 1.21855 1.01329 0.89875 1.03575 1.18912 0.98539 0.96556 0.86118 1.21246 1.44903 0.97691 0.92589 0.92587 1.25036 0.95443 0.97321 0.96652 1.70018 1.47312 1.34894 1.00479 0.86539 0.78222 0.84783 0.78429 1.19777 1.21039 1.21024 1.20922 0.91455 0.76469 0.82396 1.90835 1.65822 1.45647 1.35120 1.21245 0.94340 0.97313 0.99528 1.20894 0.93501 0.97697 1.01197 0.91157 0.91462 0.91381 0.85639 0.85920 0.90563 0.91467 0.90692 0.89090 0.89703 0.89339 0.76646 0.90170 0.90391 0.95755 0.95766 0.93013 0.86023 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.09 -0.86 5.88 -104.59 -0.62 -1.47 16 3 C -0.11 -1.22 9.69 -39.61 -0.38 -1.60 16 4 C -0.10 -1.28 9.97 -39.39 -0.39 -1.67 16 5 C 0.13 1.68 4.01 -83.69 -0.34 1.34 16 6 N -0.57 -6.73 2.85 -114.65 -0.33 -7.06 16 7 C 0.12 0.84 6.35 -4.49 -0.03 0.81 16 8 C -0.14 -0.79 5.98 -26.59 -0.16 -0.95 16 9 C -0.13 -0.99 5.59 -26.52 -0.15 -1.14 16 10 C 0.14 1.85 2.69 -69.30 -0.19 1.67 16 11 H 0.12 1.81 7.58 -51.93 -0.39 1.42 16 12 N -0.73 -10.49 4.97 -55.15 -0.27 -10.76 16 13 C 0.51 10.26 7.78 -10.99 -0.09 10.17 16 14 O -0.51 -12.90 15.21 5.54 0.08 -12.82 16 15 C -0.13 -2.65 5.64 -27.88 -0.16 -2.81 16 16 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 17 C -0.53 -15.27 9.11 -34.44 -0.31 -15.58 16 18 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -28.10 13.29 55.43 0.74 -27.37 16 21 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 25 C 0.50 7.78 6.96 -11.87 -0.08 7.69 16 26 O -0.50 -10.76 16.28 5.54 0.09 -10.67 16 27 C -0.10 -1.21 9.97 -39.39 -0.39 -1.60 16 28 C -0.11 -1.16 9.69 -39.61 -0.38 -1.55 16 29 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 34 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.46 6.96 -51.93 -0.36 0.10 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.40 4.24 7.49 -40.82 -0.31 3.94 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.02 0.75 8.10 -51.93 -0.42 0.33 16 44 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 45 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 46 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 47 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 390.22 15.07 5.88 5.88 Total: -1.00 -39.85 390.22 -9.70 -49.55 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.35 Total: 0.85 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -3.52 Total: -4.65 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.14 Total: -45.18 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.17 Total: -23.49 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -39.85 -9.70 -49.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292127708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.056 kcal (2) G-P(sol) polarization free energy of solvation -39.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds