Wall clock time and date at job start Tue Mar 31 2020 16:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 C 1.53003 * 109.47385 * 240.00012 * 2 1 3 5 5 C 1.50704 * 109.46916 * 59.99864 * 4 2 1 6 6 H 1.08000 * 119.99800 * 0.02562 * 5 4 2 7 7 C 1.37869 * 119.99852 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00210 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99874 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47112 * 90.00556 * 9 7 5 11 11 H 1.48509 * 109.47106 * 210.00438 * 9 7 5 12 12 H 1.48494 * 109.47267 * 330.00093 * 9 7 5 13 13 C 1.50704 * 109.47204 * 120.00053 * 2 1 3 14 14 C 1.38364 * 119.84924 * 299.99940 * 13 2 1 15 15 C 1.37962 * 120.14120 * 180.02562 * 14 13 2 16 16 C 1.39582 * 119.85159 * 359.97438 * 15 14 13 17 17 C 1.47844 * 120.14253 * 179.97438 * 16 15 14 18 18 O 1.21552 * 120.00192 * 359.97438 * 17 16 15 19 19 N 1.34771 * 119.99955 * 180.02562 * 17 16 15 20 20 C 1.46500 * 120.00117 * 175.03419 * 19 17 16 21 21 C 1.50706 * 115.54489 * 304.15808 * 20 19 17 22 22 N 1.34778 * 120.00285 * 298.94030 * 21 20 19 23 23 O 1.21278 * 119.99612 * 119.21360 * 21 20 19 24 24 C 1.52992 * 117.52230 * 89.86258 * 20 19 17 25 25 C 1.53001 * 117.50226 * 158.49640 * 20 19 17 26 26 C 1.39580 * 119.71030 * 0.25242 * 16 15 14 27 27 C 1.37952 * 119.85414 * 359.51517 * 26 16 15 28 28 H 1.09007 * 109.47024 * 300.00113 * 1 2 3 29 29 H 1.08996 * 109.47071 * 60.00026 * 1 2 3 30 30 H 1.09002 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47239 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47179 * 299.99907 * 3 2 1 33 33 H 1.09007 * 109.47316 * 60.00065 * 3 2 1 34 34 H 1.08991 * 109.47230 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.46666 * 300.00201 * 4 2 1 36 36 H 0.97002 * 120.00094 * 179.97438 * 8 7 5 37 37 H 1.07994 * 119.93254 * 0.02562 * 14 13 2 38 38 H 1.07995 * 120.07041 * 179.97438 * 15 14 13 39 39 H 0.96999 * 120.00193 * 355.02212 * 19 17 16 40 40 H 0.97001 * 119.99802 * 175.28964 * 22 21 20 41 41 H 0.97000 * 119.99381 * 355.28449 * 22 21 20 42 42 H 1.09006 * 117.49737 * 214.96849 * 24 20 19 43 43 H 1.08994 * 117.50132 * 359.97438 * 24 20 19 44 44 H 1.09003 * 117.49741 * 359.96526 * 25 20 19 45 45 H 1.09001 * 117.50143 * 144.96869 * 25 20 19 46 46 H 1.07999 * 120.06795 * 179.72509 * 26 16 15 47 47 H 1.08003 * 119.92905 * 180.22827 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8704 -0.4821 -3.7319 8 7 2.6257 -1.5520 -3.8526 9 14 1.2471 0.3980 -5.2571 10 1 2.2251 1.4396 -5.6620 11 1 1.0817 -0.5815 -6.3611 12 1 -0.0609 1.0355 -4.9610 13 6 2.0324 -0.7104 1.2305 14 6 1.6962 -0.2350 2.4857 15 6 2.1532 -0.8804 3.6161 16 6 2.9559 -2.0155 3.4915 17 6 3.4496 -2.7118 4.6987 18 8 3.1572 -2.2957 5.8027 19 7 4.2249 -3.8073 4.5750 20 6 4.8035 -4.4334 5.7664 21 6 5.6370 -3.5282 6.6365 22 7 6.7441 -2.9446 6.1362 23 8 5.3142 -3.3288 7.7884 24 6 3.9844 -5.5230 6.4609 25 6 5.2311 -5.8984 5.6575 26 6 3.2951 -2.4870 2.2223 27 6 2.8276 -1.8351 1.1000 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 -0.7208 -1.2494 35 1 1.6767 -1.7488 -1.2492 36 1 2.8595 -1.8838 -4.7336 37 1 1.0748 0.6431 2.5807 38 1 1.8905 -0.5081 4.5953 39 1 4.3996 -4.1812 3.6972 40 1 7.2424 -2.3091 6.6736 41 1 7.0426 -3.1603 5.2388 42 1 4.0482 -5.5851 7.5474 43 1 3.0144 -5.7739 6.0319 44 1 5.0813 -6.3966 4.6996 45 1 6.1154 -6.2075 6.2149 46 1 3.9195 -3.3621 2.1192 47 1 3.0863 -2.2011 0.1174 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148909708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:52 Heat of formation + Delta-G solvation = -34.667569 kcal Electronic energy + Delta-G solvation = -27795.976472 eV Core-core repulsion = 23943.901402 eV Total energy + Delta-G solvation = -3852.075070 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.82261 -39.71001 -38.59898 -36.89077 -35.83931 -33.88322 -33.24470 -32.46248 -30.79706 -29.84372 -27.20982 -26.48847 -25.10125 -24.25601 -23.22540 -22.93749 -21.75076 -21.08105 -19.87478 -18.55598 -18.18676 -17.84914 -17.19518 -16.42041 -15.94681 -15.28653 -15.21300 -14.98904 -14.67254 -14.49804 -14.27806 -14.20530 -13.80273 -13.47784 -13.41686 -13.21099 -12.83422 -12.32413 -12.25695 -12.04936 -11.98152 -11.52067 -11.48142 -11.34023 -11.06337 -11.05820 -10.81964 -10.70244 -10.51424 -10.29724 -10.25503 -10.04798 -9.94027 -9.90087 -9.31763 -9.18998 -8.97991 -8.75740 -8.43936 -8.38950 -6.07020 -4.07460 1.03173 1.62831 2.14072 2.72217 2.89143 3.08642 3.26951 3.34258 3.36498 3.45642 4.06860 4.31452 4.40012 4.41721 4.49437 4.66867 4.95173 5.06768 5.10884 5.18156 5.27730 5.29780 5.53495 5.59651 5.67558 5.68561 5.86089 5.90214 5.90246 6.10022 6.22946 6.30047 6.31468 6.46771 6.49012 6.50555 6.60267 6.62951 6.78680 7.01164 7.01458 7.02012 7.13610 7.22631 7.26479 7.54204 7.66997 7.91529 7.99347 8.07873 8.35051 8.96782 9.56185 11.04516 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.021568 B = 0.002414 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.903580 B =11598.242177 C =12191.781575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.035 4.035 3 C -0.124 4.124 4 C 0.034 3.966 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C -0.018 4.018 14 C -0.131 4.131 15 C -0.060 4.060 16 C -0.160 4.160 17 C 0.564 3.436 18 O -0.521 6.521 19 N -0.697 5.697 20 C 0.069 3.931 21 C 0.558 3.442 22 N -0.848 5.848 23 O -0.521 6.521 24 C -0.145 4.145 25 C -0.157 4.157 26 C -0.086 4.086 27 C -0.122 4.122 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.035 0.965 34 H 0.019 0.981 35 H 0.020 0.980 36 H 0.260 0.740 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.407 0.593 40 H 0.403 0.597 41 H 0.402 0.598 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.119 0.881 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.613 -6.694 15.211 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.035 4.035 3 C -0.181 4.181 4 C -0.003 4.003 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.019 4.019 14 C -0.149 4.149 15 C -0.079 4.079 16 C -0.163 4.163 17 C 0.353 3.647 18 O -0.396 6.396 19 N -0.353 5.353 20 C -0.022 4.022 21 C 0.340 3.660 22 N -0.412 5.412 23 O -0.394 6.394 24 C -0.184 4.184 25 C -0.195 4.195 26 C -0.105 4.105 27 C -0.140 4.140 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.244 0.756 40 H 0.234 0.766 41 H 0.230 0.770 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.128 0.872 46 H 0.137 0.863 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.118 -6.466 16.620 18.854 hybrid contribution 0.221 0.381 -1.777 1.831 sum 6.339 -6.085 14.843 17.249 Atomic orbital electron populations 1.21762 0.94300 1.01250 1.00786 1.19807 0.95416 0.95312 0.92926 1.21761 1.00477 0.95058 1.00783 1.19235 0.96188 0.95209 0.89685 1.21231 1.31162 1.12078 0.90590 0.92229 1.24985 0.95273 0.95044 0.99059 1.69943 1.37136 1.23005 1.23470 0.86659 0.79275 0.79448 0.83021 1.20753 1.21326 1.19902 1.20607 0.92595 0.93442 0.95230 1.21052 1.01391 1.00747 0.91701 1.21135 0.94491 0.93219 0.99088 1.19621 1.05060 0.99560 0.92034 1.18551 0.77310 0.79454 0.89400 1.90829 1.56302 1.65314 1.27171 1.45231 1.51899 1.30310 1.07855 1.20426 1.02111 0.88582 0.91113 1.19360 0.80192 0.79589 0.86873 1.43724 1.29031 1.47819 1.20638 1.90750 1.70114 1.60630 1.17947 1.23363 0.96127 0.98089 1.00776 1.23426 1.00405 0.92081 1.03564 1.21221 0.98653 0.98943 0.91665 1.21450 0.97568 0.95588 0.99386 0.94626 0.91196 0.93393 0.93418 0.91197 0.94633 0.96232 0.96204 0.93049 0.85647 0.85388 0.75574 0.76550 0.76971 0.87003 0.87333 0.86944 0.87185 0.86334 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.03 37.16 0.30 -1.89 16 2 C -0.03 -0.64 0.61 -155.66 -0.09 -0.74 16 3 C -0.12 -2.17 8.03 37.16 0.30 -1.88 16 4 C 0.03 0.77 2.70 -27.88 -0.08 0.70 16 5 C -0.51 -13.12 7.65 -34.44 -0.26 -13.38 16 6 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -25.22 13.29 55.43 0.74 -24.48 16 9 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 C -0.02 -0.31 4.77 -104.53 -0.50 -0.81 16 14 C -0.13 -1.96 8.69 -39.64 -0.34 -2.30 16 15 C -0.06 -0.89 9.60 -39.18 -0.38 -1.26 16 16 C -0.16 -2.24 5.87 -104.96 -0.62 -2.85 16 17 C 0.56 7.87 7.56 -12.33 -0.09 7.78 16 18 O -0.52 -9.28 15.64 5.32 0.08 -9.20 16 19 N -0.70 -6.96 5.43 -49.62 -0.27 -7.23 16 20 C 0.07 0.68 2.28 -132.97 -0.30 0.38 16 21 C 0.56 6.68 6.50 -10.98 -0.07 6.61 16 22 N -0.85 -6.81 8.87 31.22 0.28 -6.53 16 23 O -0.52 -8.51 17.42 5.56 0.10 -8.41 16 24 C -0.14 -1.32 9.97 -26.73 -0.27 -1.59 16 25 C -0.16 -0.96 10.15 -26.73 -0.27 -1.24 16 26 C -0.09 -1.13 9.54 -39.19 -0.37 -1.50 16 27 C -0.12 -1.95 8.96 -39.64 -0.36 -2.30 16 28 H 0.03 0.54 7.38 -51.92 -0.38 0.15 16 29 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 33 H 0.03 0.53 7.38 -51.92 -0.38 0.15 16 34 H 0.02 0.48 7.51 -51.93 -0.39 0.09 16 35 H 0.02 0.49 7.50 -51.93 -0.39 0.10 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.13 1.69 7.08 -52.49 -0.37 1.32 16 38 H 0.13 1.83 7.65 -52.49 -0.40 1.43 16 39 H 0.41 2.92 6.87 -40.82 -0.28 2.64 16 40 H 0.40 2.86 8.93 -40.82 -0.36 2.50 16 41 H 0.40 2.15 8.83 -40.82 -0.36 1.78 16 42 H 0.11 1.10 7.91 -51.93 -0.41 0.69 16 43 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.12 1.13 6.42 -52.49 -0.34 0.79 16 47 H 0.14 2.50 5.87 -52.48 -0.31 2.19 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -33.95 385.14 -8.41 -42.36 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.61 Total: 6.93 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -3.50 Total: -14.83 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.74 Total: -38.25 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.18 Total: -17.61 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.95 -8.41 -42.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148909708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.689 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds