Wall clock time and date at job start Tue Mar 31 2020 16:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 C 1.53003 * 109.47385 * 240.00012 * 2 1 3 5 5 C 1.50704 * 109.46916 * 59.99864 * 4 2 1 6 6 H 1.08000 * 119.99800 * 0.02562 * 5 4 2 7 7 C 1.37869 * 119.99852 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00210 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99874 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47112 * 90.00556 * 9 7 5 11 11 H 1.48509 * 109.47106 * 210.00438 * 9 7 5 12 12 H 1.48494 * 109.47267 * 330.00093 * 9 7 5 13 13 C 1.50704 * 109.47204 * 120.00053 * 2 1 3 14 14 C 1.38364 * 119.84924 * 299.99940 * 13 2 1 15 15 C 1.37962 * 120.14120 * 180.02562 * 14 13 2 16 16 C 1.39582 * 119.85159 * 359.97438 * 15 14 13 17 17 C 1.47844 * 120.14253 * 179.97438 * 16 15 14 18 18 O 1.21552 * 120.00192 * 359.97438 * 17 16 15 19 19 N 1.34771 * 119.99955 * 180.02562 * 17 16 15 20 20 C 1.46500 * 120.00117 * 175.03419 * 19 17 16 21 21 C 1.50706 * 115.54489 * 304.15808 * 20 19 17 22 22 N 1.34778 * 120.00285 * 298.94030 * 21 20 19 23 23 O 1.21278 * 119.99612 * 119.21360 * 21 20 19 24 24 C 1.52992 * 117.52230 * 89.86258 * 20 19 17 25 25 C 1.53001 * 117.50226 * 158.49640 * 20 19 17 26 26 C 1.39580 * 119.71030 * 0.25242 * 16 15 14 27 27 C 1.37952 * 119.85414 * 359.51517 * 26 16 15 28 28 H 1.09007 * 109.47024 * 300.00113 * 1 2 3 29 29 H 1.08996 * 109.47071 * 60.00026 * 1 2 3 30 30 H 1.09002 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47239 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47179 * 299.99907 * 3 2 1 33 33 H 1.09007 * 109.47316 * 60.00065 * 3 2 1 34 34 H 1.08991 * 109.47230 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.46666 * 300.00201 * 4 2 1 36 36 H 0.97002 * 120.00094 * 179.97438 * 8 7 5 37 37 H 1.07994 * 119.93254 * 0.02562 * 14 13 2 38 38 H 1.07995 * 120.07041 * 179.97438 * 15 14 13 39 39 H 0.96999 * 120.00193 * 355.02212 * 19 17 16 40 40 H 0.97001 * 119.99802 * 175.28964 * 22 21 20 41 41 H 0.97000 * 119.99381 * 355.28449 * 22 21 20 42 42 H 1.09006 * 117.49737 * 214.96849 * 24 20 19 43 43 H 1.08994 * 117.50132 * 359.97438 * 24 20 19 44 44 H 1.09003 * 117.49741 * 359.96526 * 25 20 19 45 45 H 1.09001 * 117.50143 * 144.96869 * 25 20 19 46 46 H 1.07999 * 120.06795 * 179.72509 * 26 16 15 47 47 H 1.08003 * 119.92905 * 180.22827 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8704 -0.4821 -3.7319 8 7 2.6257 -1.5520 -3.8526 9 14 1.2471 0.3980 -5.2571 10 1 2.2251 1.4396 -5.6620 11 1 1.0817 -0.5815 -6.3611 12 1 -0.0609 1.0355 -4.9610 13 6 2.0324 -0.7104 1.2305 14 6 1.6962 -0.2350 2.4857 15 6 2.1532 -0.8804 3.6161 16 6 2.9559 -2.0155 3.4915 17 6 3.4496 -2.7118 4.6987 18 8 3.1572 -2.2957 5.8027 19 7 4.2249 -3.8073 4.5750 20 6 4.8035 -4.4334 5.7664 21 6 5.6370 -3.5282 6.6365 22 7 6.7441 -2.9446 6.1362 23 8 5.3142 -3.3288 7.7884 24 6 3.9844 -5.5230 6.4609 25 6 5.2311 -5.8984 5.6575 26 6 3.2951 -2.4870 2.2223 27 6 2.8276 -1.8351 1.1000 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 -0.7208 -1.2494 35 1 1.6767 -1.7488 -1.2492 36 1 2.8595 -1.8838 -4.7336 37 1 1.0748 0.6431 2.5807 38 1 1.8905 -0.5081 4.5953 39 1 4.3996 -4.1812 3.6972 40 1 7.2424 -2.3091 6.6736 41 1 7.0426 -3.1603 5.2388 42 1 4.0482 -5.5851 7.5474 43 1 3.0144 -5.7739 6.0319 44 1 5.0813 -6.3966 4.6996 45 1 6.1154 -6.2075 6.2149 46 1 3.9195 -3.3621 2.1192 47 1 3.0863 -2.2011 0.1174 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148909708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:51 Heat of formation + Delta-G solvation = -58.529559 kcal Electronic energy + Delta-G solvation = -27797.011206 eV Core-core repulsion = 23943.901402 eV Total energy + Delta-G solvation = -3853.109804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.77606 -40.82299 -39.76562 -37.77251 -37.24204 -34.71129 -34.54969 -34.04686 -31.98242 -31.10266 -29.00448 -27.91747 -26.16837 -25.57797 -24.53888 -23.58354 -23.03977 -22.16395 -20.77393 -19.97859 -19.18705 -18.75754 -18.29640 -17.98998 -16.82827 -16.58959 -16.50043 -16.11272 -15.94583 -15.77851 -15.39705 -15.25580 -14.94009 -14.92685 -14.53017 -14.35461 -14.17637 -13.87096 -13.66677 -13.60921 -12.95915 -12.73083 -12.67434 -12.55693 -12.32539 -12.30690 -12.24428 -12.17484 -12.06148 -11.89281 -11.64982 -11.19872 -11.03701 -10.86273 -10.78432 -10.74561 -10.48094 -10.22824 -9.90290 -9.61967 -8.11992 -6.17555 -0.13057 0.46530 1.27103 1.42777 1.44275 1.53266 1.76246 1.91634 2.37160 2.45733 2.70918 2.92094 3.23076 3.56801 3.70186 3.73580 3.85096 3.90924 3.95314 4.03174 4.30526 4.41916 4.43944 4.47906 4.58072 4.61009 4.64410 4.89979 4.95156 4.96142 5.03739 5.09474 5.13121 5.15179 5.24081 5.31850 5.34250 5.39813 5.50829 5.54076 5.56956 5.78487 5.82972 5.83445 5.92862 5.98582 6.28869 6.37317 6.41151 6.96479 7.08489 7.22782 7.49467 8.99876 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.021568 B = 0.002414 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.903580 B =11598.242177 C =12191.781575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.030 4.030 3 C -0.120 4.120 4 C 0.046 3.954 5 C -0.518 4.518 6 H 0.065 0.935 7 C 0.002 3.998 8 N -0.932 5.932 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.265 1.265 13 C -0.034 4.034 14 C -0.126 4.126 15 C -0.065 4.065 16 C -0.159 4.159 17 C 0.564 3.436 18 O -0.564 6.564 19 N -0.674 5.674 20 C 0.043 3.957 21 C 0.550 3.450 22 N -0.830 5.830 23 O -0.576 6.576 24 C -0.164 4.164 25 C -0.112 4.112 26 C -0.068 4.068 27 C -0.139 4.139 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.055 0.945 33 H 0.065 0.935 34 H -0.005 1.005 35 H -0.006 1.006 36 H 0.259 0.741 37 H 0.143 0.857 38 H 0.131 0.869 39 H 0.423 0.577 40 H 0.408 0.592 41 H 0.417 0.583 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.143 0.857 45 H 0.126 0.874 46 H 0.157 0.843 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.031 -7.074 15.262 18.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.030 4.030 3 C -0.177 4.177 4 C 0.009 3.991 5 C -0.556 4.556 6 H 0.083 0.917 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.189 1.189 13 C -0.035 4.035 14 C -0.143 4.143 15 C -0.084 4.084 16 C -0.162 4.162 17 C 0.354 3.646 18 O -0.443 6.443 19 N -0.330 5.330 20 C -0.048 4.048 21 C 0.333 3.667 22 N -0.394 5.394 23 O -0.454 6.454 24 C -0.203 4.203 25 C -0.149 4.149 26 C -0.086 4.086 27 C -0.157 4.157 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.013 0.987 35 H 0.013 0.987 36 H 0.068 0.932 37 H 0.160 0.840 38 H 0.149 0.851 39 H 0.264 0.736 40 H 0.240 0.760 41 H 0.248 0.752 42 H 0.115 0.885 43 H 0.128 0.872 44 H 0.161 0.839 45 H 0.144 0.856 46 H 0.175 0.825 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.579 -6.860 16.610 19.137 hybrid contribution 0.156 0.451 -1.743 1.807 sum 6.735 -6.409 14.867 17.534 Atomic orbital electron populations 1.21713 0.93537 1.00943 1.01532 1.19638 0.96026 0.95574 0.91794 1.21712 0.99970 0.94477 1.01549 1.19034 0.94444 0.94183 0.91460 1.21658 1.30416 1.12015 0.91560 0.91671 1.25789 0.95722 0.95833 1.02164 1.70068 1.38686 1.24582 1.23980 0.85685 0.79066 0.78304 0.79434 1.20309 1.21426 1.18917 1.20455 0.93868 0.94126 0.95003 1.21087 1.01360 1.01163 0.90739 1.21266 0.94546 0.93525 0.99101 1.19742 1.04678 0.99386 0.92413 1.18544 0.77442 0.80145 0.88503 1.90824 1.58150 1.66776 1.28529 1.44991 1.50197 1.28894 1.08915 1.20513 1.03287 0.89771 0.91184 1.19783 0.80818 0.79636 0.86490 1.43617 1.27785 1.46700 1.21264 1.90721 1.71675 1.62661 1.20330 1.23394 0.97714 0.98704 1.00443 1.23624 0.99018 0.88134 1.04100 1.21427 0.97762 0.99296 0.90115 1.21367 0.98678 0.96270 0.99427 0.91578 0.92651 0.94237 0.94204 0.92608 0.91594 0.98709 0.98739 0.93169 0.83975 0.85148 0.73649 0.76001 0.75166 0.88532 0.87165 0.83907 0.85583 0.82535 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.14 8.03 71.98 0.58 -3.56 16 2 C -0.03 -1.12 0.61 -52.93 -0.03 -1.15 16 3 C -0.12 -4.11 8.03 71.98 0.58 -3.53 16 4 C 0.05 2.16 2.70 29.85 0.08 2.24 16 5 C -0.52 -26.89 7.65 25.60 0.20 -26.70 16 6 H 0.07 3.24 5.68 -2.91 -0.02 3.23 16 7 C 0.00 0.12 5.46 84.65 0.46 0.58 16 8 N -0.93 -53.61 13.29 21.45 0.28 -53.33 16 9 Si 0.95 42.45 29.54 68.60 2.03 44.48 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 13 C -0.03 -1.12 4.77 -19.80 -0.09 -1.21 16 14 C -0.13 -3.54 8.69 22.23 0.19 -3.34 16 15 C -0.07 -1.83 9.60 22.53 0.22 -1.61 16 16 C -0.16 -4.18 5.87 -20.09 -0.12 -4.29 16 17 C 0.56 14.89 7.56 86.79 0.66 15.55 16 18 O -0.56 -19.90 15.64 -3.88 -0.06 -19.97 16 19 N -0.67 -11.77 5.43 -429.18 -2.33 -14.10 16 20 C 0.04 0.77 2.28 2.86 0.01 0.78 16 21 C 0.55 12.68 6.50 87.66 0.57 13.25 16 22 N -0.83 -11.99 8.87 -173.53 -1.54 -13.53 16 23 O -0.58 -19.16 17.42 -3.02 -0.05 -19.21 16 24 C -0.16 -2.77 9.97 30.59 0.31 -2.46 16 25 C -0.11 -0.97 10.15 30.59 0.31 -0.66 16 26 C -0.07 -1.63 9.54 22.53 0.21 -1.42 16 27 C -0.14 -4.39 8.96 22.23 0.20 -4.20 16 28 H 0.07 1.85 7.38 -2.38 -0.02 1.83 16 29 H 0.05 2.04 6.62 -2.39 -0.02 2.02 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.05 2.04 6.62 -2.39 -0.02 2.02 16 33 H 0.07 1.84 7.38 -2.38 -0.02 1.82 16 34 H -0.01 -0.28 7.51 -2.39 -0.02 -0.30 16 35 H -0.01 -0.30 7.50 -2.39 -0.02 -0.31 16 36 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.14 3.45 7.08 -2.91 -0.02 3.43 16 38 H 0.13 3.59 7.65 -2.91 -0.02 3.57 16 39 H 0.42 4.46 6.87 -92.71 -0.64 3.82 16 40 H 0.41 5.32 8.93 -92.71 -0.83 4.49 16 41 H 0.42 3.37 8.83 -92.71 -0.82 2.55 16 42 H 0.10 1.93 7.91 -2.38 -0.02 1.91 16 43 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 44 H 0.14 0.44 8.14 -2.39 -0.02 0.43 16 45 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.16 2.44 6.42 -2.91 -0.02 2.42 16 47 H 0.12 4.40 5.87 -2.91 -0.02 4.39 16 Total: -1.00 -76.96 385.14 1.40 -75.56 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -1.25 Total: 21.81 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 4.32 Total: -21.73 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -3.59 Total: -80.95 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.11 Total: -39.18 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -76.96 1.40 -75.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148909708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.035 kcal (2) G-P(sol) polarization free energy of solvation -76.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds