Wall clock time and date at job start Tue Mar 31 2020 16:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.46778 * 2 1 4 4 C 1.53004 * 109.47359 * 240.00753 * 2 1 3 5 5 N 1.46492 * 109.47680 * 120.00267 * 2 1 3 6 6 C 1.46767 * 124.35224 * 179.97438 * 5 2 1 7 7 C 1.54482 * 105.47301 * 197.03748 * 6 5 2 8 8 H 1.09001 * 111.00197 * 216.45385 * 7 6 5 9 9 C 1.50696 * 110.97279 * 92.69870 * 7 6 5 10 10 O 1.21287 * 120.00072 * 6.16622 * 9 7 6 11 11 N 1.34777 * 120.00157 * 186.16856 * 9 7 6 12 12 C 1.39941 * 120.00086 * 184.04910 * 11 9 7 13 13 C 1.39299 * 119.94172 * 324.58178 * 12 11 9 14 14 C 1.38490 * 120.42070 * 179.72132 * 13 12 11 15 15 C 1.37676 * 120.32550 * 0.55531 * 14 13 12 16 16 C 1.40743 * 119.88652 * 359.72712 * 15 14 13 17 17 C 1.41406 * 120.21244 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99855 * 34.72449 * 17 16 15 19 19 C 1.39936 * 120.00115 * 214.72630 * 17 16 15 20 20 N 1.30829 * 119.99815 * 355.55001 * 19 17 16 21 21 Si 1.86796 * 120.00222 * 175.54877 * 19 17 16 22 22 H 1.48498 * 109.47356 * 89.99794 * 21 19 17 23 23 H 1.48499 * 109.46900 * 210.00293 * 21 19 17 24 24 H 1.48503 * 109.46988 * 329.99815 * 21 19 17 25 25 C 1.38233 * 119.94831 * 144.85895 * 12 11 9 26 26 C 1.54630 * 101.76562 * 334.57905 * 7 6 5 27 27 C 1.34423 * 124.34780 * 359.97438 * 5 2 1 28 28 O 1.21276 * 124.94042 * 359.60616 * 27 5 2 29 29 H 1.08993 * 109.47049 * 299.99368 * 1 2 3 30 30 H 1.09000 * 109.47877 * 59.99804 * 1 2 3 31 31 H 1.09005 * 109.46696 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46792 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47410 * 300.00327 * 3 2 1 34 34 H 1.08993 * 109.46815 * 60.00488 * 3 2 1 35 35 H 1.09006 * 109.46414 * 299.99317 * 4 2 1 36 36 H 1.08996 * 109.47208 * 59.99441 * 4 2 1 37 37 H 1.08997 * 109.47417 * 180.02562 * 4 2 1 38 38 H 1.08997 * 110.24803 * 78.03396 * 6 5 2 39 39 H 1.08995 * 110.24239 * 316.03139 * 6 5 2 40 40 H 0.97001 * 120.00104 * 4.31900 * 11 9 7 41 41 H 1.07988 * 119.78626 * 0.02562 * 13 12 11 42 42 H 1.07997 * 119.83751 * 180.27813 * 14 13 12 43 43 H 1.08005 * 120.06108 * 179.69708 * 15 14 13 44 44 H 0.96994 * 119.99983 * 180.02562 * 20 19 17 45 45 H 1.08000 * 120.16536 * 0.02562 * 25 12 11 46 46 H 1.08997 * 110.48876 * 143.47806 * 26 7 6 47 47 H 1.09000 * 110.48978 * 266.12505 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 2.0184 -0.6906 1.1960 6 6 3.4369 -0.8795 1.5221 7 6 3.4696 -1.9980 2.5871 8 1 4.2486 -1.8110 3.3262 9 6 3.6522 -3.3490 1.9451 10 8 3.8625 -3.4307 0.7534 11 7 3.5818 -4.4666 2.6951 12 6 3.8351 -5.7151 2.1158 13 6 3.4448 -5.9640 0.8020 14 6 3.6956 -7.1940 0.2171 15 6 4.3239 -8.1887 0.9322 16 6 4.7187 -7.9536 2.2625 17 6 5.3649 -8.9701 3.0032 18 1 6.0396 -9.6530 2.5083 19 6 5.1302 -9.0913 4.3774 20 7 4.3821 -8.2123 4.9933 21 14 5.8850 -10.5081 5.3325 22 1 7.2177 -10.1035 5.8478 23 1 5.0010 -10.8639 6.4714 24 1 6.0364 -11.6834 4.4375 25 6 4.4670 -6.7011 2.8502 26 6 2.0645 -1.8716 3.2203 27 6 1.2249 -1.2328 2.1360 28 8 0.0125 -1.2133 2.1170 29 1 -0.3633 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7488 -1.2493 36 1 1.6766 -0.2072 -2.1393 37 1 3.1300 -0.7215 -1.2491 38 1 3.8563 0.0408 1.9285 39 1 3.9900 -1.1874 0.6348 40 1 3.3517 -4.4060 3.6354 41 1 2.9478 -5.1914 0.2345 42 1 3.3930 -7.3754 -0.8036 43 1 4.5130 -9.1480 0.4734 44 1 4.2197 -8.2961 5.9458 45 1 4.7656 -6.5107 3.8705 46 1 1.6719 -2.8554 3.4772 47 1 2.0995 -1.2317 4.1020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456737708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:22 Heat of formation + Delta-G solvation = -48.493421 kcal Electronic energy + Delta-G solvation = -28645.114370 eV Core-core repulsion = 24792.439766 eV Total energy + Delta-G solvation = -3852.674604 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.18182 -39.45796 -37.34377 -36.77069 -35.55817 -34.32531 -33.27294 -30.81074 -29.51977 -28.35198 -28.04498 -27.49359 -27.14092 -25.25904 -23.74356 -21.64161 -21.25613 -20.76075 -19.52044 -18.70080 -17.59637 -17.44442 -16.68885 -15.90897 -15.59177 -15.30489 -15.00965 -14.75860 -14.47688 -14.18377 -14.14678 -13.91333 -13.70964 -13.38099 -13.22288 -12.83870 -12.68773 -12.41053 -12.34906 -12.19868 -12.06634 -11.84041 -11.72938 -11.68544 -11.58469 -11.26219 -11.17336 -11.15954 -11.11226 -10.75427 -10.67306 -10.04438 -9.79575 -9.47559 -9.46587 -9.19039 -8.99183 -8.74914 -7.29087 -7.04974 -6.60816 -4.43156 2.47685 2.53959 2.84169 2.85348 3.07542 3.10248 3.13353 3.25868 3.49969 3.96007 4.15596 4.20006 4.62149 4.68159 4.69552 4.74703 4.85717 4.90604 5.20327 5.25939 5.34801 5.41385 5.47539 5.54584 5.58700 5.60664 5.62781 5.69151 5.70561 5.79763 5.93320 6.20871 6.22910 6.23892 6.58464 6.60897 6.63481 6.84690 7.00426 7.06158 7.08822 7.29208 7.57187 7.65582 7.88372 8.03270 8.10804 8.14958 8.29489 8.51675 8.69860 8.89919 8.93276 10.27488 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022767 B = 0.002773 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.571985 B =10094.504902 C =10634.814223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.174 3.826 3 C -0.155 4.155 4 C -0.156 4.156 5 N -0.604 5.604 6 C 0.115 3.885 7 C -0.125 4.125 8 H 0.126 0.874 9 C 0.513 3.487 10 O -0.519 6.519 11 N -0.659 5.659 12 C 0.133 3.867 13 C -0.213 4.213 14 C -0.096 4.096 15 C -0.215 4.215 16 C 0.113 3.887 17 C -0.466 4.466 18 H 0.076 0.924 19 C 0.071 3.929 20 N -0.818 5.818 21 Si 0.914 3.086 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.264 1.264 25 C -0.166 4.166 26 C -0.150 4.150 27 C 0.520 3.480 28 O -0.529 6.529 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.403 0.597 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.276 0.724 45 H 0.133 0.867 46 H 0.107 0.893 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.056 17.158 -2.215 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.091 3.909 3 C -0.213 4.213 4 C -0.214 4.214 5 N -0.338 5.338 6 C -0.008 4.008 7 C -0.147 4.147 8 H 0.143 0.857 9 C 0.298 3.702 10 O -0.394 6.394 11 N -0.302 5.302 12 C 0.042 3.958 13 C -0.234 4.234 14 C -0.115 4.115 15 C -0.235 4.235 16 C 0.110 3.890 17 C -0.497 4.497 18 H 0.094 0.906 19 C -0.143 4.143 20 N -0.446 5.446 21 Si 0.739 3.261 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.188 1.188 25 C -0.188 4.188 26 C -0.190 4.190 27 C 0.307 3.693 28 O -0.406 6.406 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.238 0.762 41 H 0.124 0.876 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.087 0.913 45 H 0.151 0.849 46 H 0.125 0.875 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.652 17.230 -2.912 17.675 hybrid contribution 0.310 -0.705 1.084 1.330 sum -2.342 16.526 -1.828 16.791 Atomic orbital electron populations 1.22090 0.92251 1.03656 1.01742 1.20456 0.95183 0.91331 0.83926 1.22178 1.01522 0.95195 1.02437 1.22161 1.01885 1.01235 0.96150 1.48335 1.07033 1.56173 1.22291 1.21957 0.82745 0.96659 0.99429 1.22342 0.99329 0.93861 0.99191 0.85652 1.20140 0.77327 0.85371 0.87350 1.90694 1.47516 1.86622 1.14585 1.43399 1.68148 1.05387 1.13267 1.17696 1.00473 0.83778 0.93877 1.20494 1.09892 0.97771 0.95256 1.20461 0.99795 0.93546 0.97713 1.21197 1.07086 0.98113 0.97066 1.17417 0.89751 0.91189 0.90638 1.19476 1.24568 1.13073 0.92568 0.90619 1.25821 0.93618 0.96945 0.97885 1.69723 1.31046 1.32989 1.10810 0.86213 0.79275 0.81474 0.79099 1.19600 1.20347 1.18779 1.21390 1.03775 0.92310 1.01303 1.22429 0.93630 1.04270 0.98680 1.20724 0.87449 0.77890 0.83214 1.90722 1.12669 1.59618 1.77580 0.91392 0.92535 0.91237 0.92170 0.91338 0.92298 0.91792 0.91628 0.91907 0.90460 0.88225 0.76207 0.87617 0.89008 0.88749 0.91295 0.84910 0.87488 0.86751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 7.00 37.15 0.26 -1.38 16 2 C 0.17 1.88 1.20 -131.82 -0.16 1.72 16 3 C -0.16 -1.27 8.54 37.16 0.32 -0.95 16 4 C -0.16 -1.70 8.49 37.16 0.32 -1.39 16 5 N -0.60 -7.12 2.76 -157.57 -0.43 -7.56 16 6 C 0.12 1.17 5.98 -3.12 -0.02 1.15 16 7 C -0.13 -1.33 3.55 -90.14 -0.32 -1.65 16 8 H 0.13 0.95 8.14 -51.93 -0.42 0.52 16 9 C 0.51 8.25 7.00 -10.99 -0.08 8.18 16 10 O -0.52 -10.14 12.97 5.55 0.07 -10.06 16 11 N -0.66 -11.62 5.10 -9.91 -0.05 -11.67 16 12 C 0.13 3.01 6.28 -83.76 -0.53 2.49 16 13 C -0.21 -4.98 8.70 -39.09 -0.34 -5.32 16 14 C -0.10 -2.23 10.02 -39.69 -0.40 -2.63 16 15 C -0.21 -5.27 9.79 -38.84 -0.38 -5.65 16 16 C 0.11 2.95 5.55 -106.85 -0.59 2.36 16 17 C -0.47 -12.15 9.04 -37.74 -0.34 -12.49 16 18 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 19 C 0.07 1.76 5.42 -17.34 -0.09 1.66 16 20 N -0.82 -20.35 10.60 55.55 0.59 -19.76 16 21 Si 0.91 18.59 29.56 -169.99 -5.03 13.56 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 23 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 24 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 25 C -0.17 -4.12 8.58 -38.69 -0.33 -4.46 16 26 C -0.15 -1.57 6.35 -26.74 -0.17 -1.74 16 27 C 0.52 7.07 7.84 -10.86 -0.09 6.98 16 28 O -0.53 -8.82 13.99 5.56 0.08 -8.74 16 29 H 0.07 0.86 7.06 -51.93 -0.37 0.50 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.99 7.08 -51.93 -0.37 0.62 16 32 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.68 7.21 -51.93 -0.37 0.31 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.10 1.17 5.92 -51.93 -0.31 0.86 16 40 H 0.40 5.97 8.47 -40.82 -0.35 5.63 16 41 H 0.11 2.47 6.25 -52.49 -0.33 2.14 16 42 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 44 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 45 H 0.13 3.34 6.14 -52.49 -0.32 3.02 16 46 H 0.11 1.22 7.41 -51.93 -0.38 0.83 16 47 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -31.24 376.46 -9.02 -40.26 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -6.98 Total: 11.41 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -2.94 Total: -13.11 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.10 Total: -38.99 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.15 Total: -18.81 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.24 -9.02 -40.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456737708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.233 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds