Wall clock time and date at job start Tue Mar 31 2020 16:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.46778 * 2 1 4 4 C 1.53004 * 109.47359 * 240.00753 * 2 1 3 5 5 N 1.46492 * 109.47680 * 120.00267 * 2 1 3 6 6 C 1.46767 * 124.35224 * 179.97438 * 5 2 1 7 7 C 1.54482 * 105.47301 * 197.03748 * 6 5 2 8 8 H 1.09001 * 111.00197 * 216.45385 * 7 6 5 9 9 C 1.50696 * 110.97279 * 92.69870 * 7 6 5 10 10 O 1.21287 * 120.00072 * 6.16622 * 9 7 6 11 11 N 1.34777 * 120.00157 * 186.16856 * 9 7 6 12 12 C 1.39941 * 120.00086 * 184.04910 * 11 9 7 13 13 C 1.39299 * 119.94172 * 324.58178 * 12 11 9 14 14 C 1.38490 * 120.42070 * 179.72132 * 13 12 11 15 15 C 1.37676 * 120.32550 * 0.55531 * 14 13 12 16 16 C 1.40743 * 119.88652 * 359.72712 * 15 14 13 17 17 C 1.41406 * 120.21244 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99855 * 34.72449 * 17 16 15 19 19 C 1.39936 * 120.00115 * 214.72630 * 17 16 15 20 20 N 1.30829 * 119.99815 * 355.55001 * 19 17 16 21 21 Si 1.86796 * 120.00222 * 175.54877 * 19 17 16 22 22 H 1.48498 * 109.47356 * 89.99794 * 21 19 17 23 23 H 1.48499 * 109.46900 * 210.00293 * 21 19 17 24 24 H 1.48503 * 109.46988 * 329.99815 * 21 19 17 25 25 C 1.38233 * 119.94831 * 144.85895 * 12 11 9 26 26 C 1.54630 * 101.76562 * 334.57905 * 7 6 5 27 27 C 1.34423 * 124.34780 * 359.97438 * 5 2 1 28 28 O 1.21276 * 124.94042 * 359.60616 * 27 5 2 29 29 H 1.08993 * 109.47049 * 299.99368 * 1 2 3 30 30 H 1.09000 * 109.47877 * 59.99804 * 1 2 3 31 31 H 1.09005 * 109.46696 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46792 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47410 * 300.00327 * 3 2 1 34 34 H 1.08993 * 109.46815 * 60.00488 * 3 2 1 35 35 H 1.09006 * 109.46414 * 299.99317 * 4 2 1 36 36 H 1.08996 * 109.47208 * 59.99441 * 4 2 1 37 37 H 1.08997 * 109.47417 * 180.02562 * 4 2 1 38 38 H 1.08997 * 110.24803 * 78.03396 * 6 5 2 39 39 H 1.08995 * 110.24239 * 316.03139 * 6 5 2 40 40 H 0.97001 * 120.00104 * 4.31900 * 11 9 7 41 41 H 1.07988 * 119.78626 * 0.02562 * 13 12 11 42 42 H 1.07997 * 119.83751 * 180.27813 * 14 13 12 43 43 H 1.08005 * 120.06108 * 179.69708 * 15 14 13 44 44 H 0.96994 * 119.99983 * 180.02562 * 20 19 17 45 45 H 1.08000 * 120.16536 * 0.02562 * 25 12 11 46 46 H 1.08997 * 110.48876 * 143.47806 * 26 7 6 47 47 H 1.09000 * 110.48978 * 266.12505 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 2.0184 -0.6906 1.1960 6 6 3.4369 -0.8795 1.5221 7 6 3.4696 -1.9980 2.5871 8 1 4.2486 -1.8110 3.3262 9 6 3.6522 -3.3490 1.9451 10 8 3.8625 -3.4307 0.7534 11 7 3.5818 -4.4666 2.6951 12 6 3.8351 -5.7151 2.1158 13 6 3.4448 -5.9640 0.8020 14 6 3.6956 -7.1940 0.2171 15 6 4.3239 -8.1887 0.9322 16 6 4.7187 -7.9536 2.2625 17 6 5.3649 -8.9701 3.0032 18 1 6.0396 -9.6530 2.5083 19 6 5.1302 -9.0913 4.3774 20 7 4.3821 -8.2123 4.9933 21 14 5.8850 -10.5081 5.3325 22 1 7.2177 -10.1035 5.8478 23 1 5.0010 -10.8639 6.4714 24 1 6.0364 -11.6834 4.4375 25 6 4.4670 -6.7011 2.8502 26 6 2.0645 -1.8716 3.2203 27 6 1.2249 -1.2328 2.1360 28 8 0.0125 -1.2133 2.1170 29 1 -0.3633 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7488 -1.2493 36 1 1.6766 -0.2072 -2.1393 37 1 3.1300 -0.7215 -1.2491 38 1 3.8563 0.0408 1.9285 39 1 3.9900 -1.1874 0.6348 40 1 3.3517 -4.4060 3.6354 41 1 2.9478 -5.1914 0.2345 42 1 3.3930 -7.3754 -0.8036 43 1 4.5130 -9.1480 0.4734 44 1 4.2197 -8.2961 5.9458 45 1 4.7656 -6.5107 3.8705 46 1 1.6719 -2.8554 3.4772 47 1 2.0995 -1.2317 4.1020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456737708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:21 Heat of formation + Delta-G solvation = -66.671542 kcal Electronic energy + Delta-G solvation = -28645.902633 eV Core-core repulsion = 24792.439766 eV Total energy + Delta-G solvation = -3853.462867 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.22272 -40.82310 -39.02934 -37.77085 -36.58121 -35.95835 -35.05001 -31.88553 -31.38120 -29.97163 -28.94646 -28.23789 -28.07145 -27.15879 -24.92792 -23.07551 -22.54007 -22.30390 -20.95044 -19.67871 -19.21839 -18.78056 -17.71050 -17.40986 -16.92395 -16.60776 -16.45661 -16.31373 -15.87785 -15.32446 -15.11128 -14.96816 -14.78828 -14.67969 -14.55375 -14.27279 -14.07462 -13.81873 -13.55024 -13.17864 -13.04730 -12.97868 -12.90047 -12.80484 -12.76524 -12.63341 -12.52601 -12.47435 -12.31841 -12.12254 -11.96143 -11.81722 -11.62095 -11.11603 -10.94466 -10.58610 -10.47674 -9.66361 -9.21150 -8.83992 -8.44452 -6.39146 0.80245 1.05363 1.42097 1.49145 1.53670 1.55375 1.72869 1.98569 2.20572 2.25793 2.81336 3.25587 3.30893 3.61791 3.69947 3.80159 3.90651 3.92333 4.07724 4.34748 4.45056 4.54055 4.58994 4.66216 4.68471 4.71926 4.74215 4.78640 4.83344 4.84486 4.85109 4.92070 4.93313 5.14238 5.16859 5.19622 5.20203 5.27215 5.36245 5.41162 5.69800 5.79529 5.85771 6.01239 6.13952 6.16612 6.34710 6.58413 6.74989 6.97893 6.98907 7.16362 7.27028 8.43937 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022767 B = 0.002773 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.571985 B =10094.504902 C =10634.814223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.166 3.834 3 C -0.146 4.146 4 C -0.150 4.150 5 N -0.604 5.604 6 C 0.114 3.886 7 C -0.110 4.110 8 H 0.172 0.828 9 C 0.508 3.492 10 O -0.555 6.555 11 N -0.657 5.657 12 C 0.143 3.857 13 C -0.227 4.227 14 C -0.096 4.096 15 C -0.236 4.236 16 C 0.084 3.916 17 C -0.500 4.500 18 H 0.072 0.928 19 C 0.033 3.967 20 N -0.837 5.837 21 Si 0.985 3.015 22 H -0.262 1.262 23 H -0.269 1.269 24 H -0.265 1.265 25 C -0.184 4.184 26 C -0.141 4.141 27 C 0.503 3.497 28 O -0.572 6.572 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.028 0.972 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.417 0.583 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.101 0.899 44 H 0.285 0.715 45 H 0.126 0.874 46 H 0.096 0.904 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 19.035 -1.000 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.083 3.917 3 C -0.204 4.204 4 C -0.208 4.208 5 N -0.338 5.338 6 C -0.009 4.009 7 C -0.131 4.131 8 H 0.189 0.811 9 C 0.296 3.704 10 O -0.433 6.433 11 N -0.302 5.302 12 C 0.050 3.950 13 C -0.248 4.248 14 C -0.115 4.115 15 C -0.255 4.255 16 C 0.082 3.918 17 C -0.531 4.531 18 H 0.090 0.910 19 C -0.180 4.180 20 N -0.465 5.465 21 Si 0.807 3.193 22 H -0.186 1.186 23 H -0.194 1.194 24 H -0.189 1.189 25 C -0.206 4.206 26 C -0.181 4.181 27 C 0.292 3.708 28 O -0.452 6.452 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.102 0.898 40 H 0.254 0.746 41 H 0.121 0.879 42 H 0.134 0.866 43 H 0.119 0.881 44 H 0.096 0.904 45 H 0.144 0.856 46 H 0.114 0.886 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.598 19.150 -1.697 19.292 hybrid contribution -0.060 -1.228 0.613 1.373 sum -1.658 17.923 -1.084 18.032 Atomic orbital electron populations 1.21980 0.93314 1.01463 1.02187 1.20639 0.94454 0.93139 0.83499 1.22101 1.02216 0.92766 1.03298 1.22114 1.01841 0.99453 0.97420 1.48526 1.07720 1.55461 1.22057 1.22172 0.81598 0.98199 0.98889 1.22408 1.00823 0.89957 0.99884 0.81084 1.21188 0.75531 0.86725 0.86939 1.90680 1.48775 1.87370 1.16450 1.43414 1.68320 1.04309 1.14174 1.17724 0.98534 0.85322 0.93446 1.20635 1.10461 0.97873 0.95850 1.20745 0.98809 0.93139 0.98759 1.21340 1.08200 0.98956 0.97050 1.17818 0.90392 0.92030 0.91578 1.19710 1.25711 1.13766 0.93882 0.90961 1.26643 0.93733 0.99420 0.98184 1.69772 1.31100 1.34112 1.11516 0.85142 0.78724 0.77891 0.77546 1.18621 1.19383 1.18889 1.21329 1.05342 0.92707 1.01236 1.22470 0.92362 1.04263 0.99025 1.21329 0.87326 0.77903 0.84289 1.90702 1.14501 1.61297 1.78729 0.92547 0.90370 0.94724 0.90926 0.89799 0.92176 0.95270 0.89509 0.91750 0.86063 0.89751 0.74550 0.87867 0.86621 0.88073 0.90435 0.85619 0.88555 0.82680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 7.00 71.98 0.50 -2.60 16 2 C 0.17 3.38 1.20 3.61 0.00 3.38 16 3 C -0.15 -1.95 8.54 71.98 0.61 -1.34 16 4 C -0.15 -3.19 8.49 71.98 0.61 -2.58 16 5 N -0.60 -13.37 2.76 -771.04 -2.13 -15.49 16 6 C 0.11 1.97 5.98 86.83 0.52 2.49 16 7 C -0.11 -1.99 3.55 -10.48 -0.04 -2.03 16 8 H 0.17 1.67 8.14 -2.39 -0.02 1.65 16 9 C 0.51 15.83 7.00 87.66 0.61 16.44 16 10 O -0.56 -21.71 12.97 -3.05 -0.04 -21.75 16 11 N -0.66 -22.89 5.10 -303.65 -1.55 -24.44 16 12 C 0.14 6.56 6.28 38.10 0.24 6.80 16 13 C -0.23 -10.82 8.70 22.59 0.20 -10.62 16 14 C -0.10 -4.51 10.02 22.20 0.22 -4.29 16 15 C -0.24 -11.89 9.79 22.75 0.22 -11.67 16 16 C 0.08 4.56 5.55 -21.31 -0.12 4.44 16 17 C -0.50 -26.70 9.04 23.46 0.21 -26.49 16 18 H 0.07 3.75 7.85 -2.91 -0.02 3.73 16 19 C 0.03 1.60 5.42 85.25 0.46 2.07 16 20 N -0.84 -41.78 10.60 21.82 0.23 -41.55 16 21 Si 0.99 37.77 29.56 68.60 2.03 39.80 16 22 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 23 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 24 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 25 C -0.18 -9.36 8.58 22.85 0.20 -9.17 16 26 C -0.14 -2.62 6.35 30.59 0.19 -2.42 16 27 C 0.50 13.27 7.84 87.90 0.69 13.96 16 28 O -0.57 -19.49 13.99 -3.02 -0.04 -19.53 16 29 H 0.06 1.44 7.06 -2.39 -0.02 1.43 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.03 1.03 7.08 -2.38 -0.02 1.02 16 32 H 0.07 0.81 7.90 -2.38 -0.02 0.79 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.33 7.21 -2.39 -0.02 1.32 16 38 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.08 1.81 5.92 -2.39 -0.01 1.79 16 40 H 0.42 11.96 8.47 -92.71 -0.78 11.17 16 41 H 0.10 4.94 6.25 -2.92 -0.02 4.92 16 42 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 43 H 0.10 4.80 8.06 -2.91 -0.02 4.77 16 44 H 0.28 12.86 8.30 -92.71 -0.77 12.09 16 45 H 0.13 6.47 6.14 -2.91 -0.02 6.45 16 46 H 0.10 2.05 7.41 -2.39 -0.02 2.04 16 47 H 0.16 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -72.18 376.46 4.05 -68.13 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: 0.20 Total: 38.46 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 5.35 Total: -23.63 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -3.45 Total: -81.48 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -0.08 Total: -41.28 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -72.18 4.05 -68.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456737708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.458 kcal (2) G-P(sol) polarization free energy of solvation -72.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds