Wall clock time and date at job start Tue Mar 31 2020 16:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47152 * 2 1 4 4 C 1.50699 * 109.46900 * 240.00089 * 2 1 3 5 5 H 1.08004 * 119.99911 * 241.40877 * 4 2 1 6 6 C 1.37873 * 120.00282 * 61.40566 * 4 2 1 7 7 N 1.31510 * 120.00161 * 192.03160 * 6 4 2 8 8 Si 1.86804 * 119.99964 * 12.02690 * 6 4 2 9 9 H 1.48499 * 109.46692 * 84.63904 * 8 6 4 10 10 H 1.48495 * 109.46989 * 204.63759 * 8 6 4 11 11 H 1.48504 * 109.47058 * 324.64070 * 8 6 4 12 12 C 1.53006 * 109.47112 * 120.00199 * 2 1 3 13 13 N 1.46502 * 109.46775 * 299.99901 * 12 2 1 14 14 C 1.34776 * 119.99587 * 180.02562 * 13 12 2 15 15 O 1.21585 * 120.00036 * 359.97438 * 14 13 12 16 16 N 1.34781 * 119.99849 * 180.02562 * 14 13 12 17 17 C 1.39975 * 120.00038 * 184.69443 * 16 14 13 18 18 C 1.39022 * 120.10169 * 144.75350 * 17 16 14 19 19 C 1.38112 * 120.41764 * 180.02562 * 18 17 16 20 20 C 1.38378 * 120.46933 * 359.91937 * 19 18 17 21 21 C 1.39604 * 119.37071 * 359.93304 * 20 19 18 22 22 C 1.38547 * 120.09917 * 324.73098 * 17 16 14 23 23 C 1.47615 * 120.11156 * 180.33585 * 21 20 19 24 24 O 1.21253 * 121.17686 * 168.60197 * 23 21 20 25 25 C 1.51473 * 117.65364 * 348.63024 * 23 21 20 26 26 C 1.53439 * 107.37362 * 42.47405 * 25 23 21 27 27 C 1.50447 * 119.04642 * 179.75197 * 20 19 18 28 28 H 1.09004 * 109.47155 * 308.97221 * 1 2 3 29 29 H 1.08996 * 109.47389 * 68.97304 * 1 2 3 30 30 H 1.09006 * 109.47427 * 188.97373 * 1 2 3 31 31 H 1.09001 * 109.47427 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.47161 * 299.99993 * 3 2 1 33 33 H 1.09002 * 109.47413 * 60.00057 * 3 2 1 34 34 H 0.96997 * 120.00293 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46548 * 180.02562 * 12 2 1 36 36 H 1.08998 * 109.47242 * 60.00014 * 12 2 1 37 37 H 0.97000 * 120.00432 * 359.97438 * 13 12 2 38 38 H 0.97002 * 120.00094 * 4.68576 * 16 14 13 39 39 H 1.08003 * 119.79455 * 0.34888 * 18 17 16 40 40 H 1.07997 * 119.76919 * 179.89840 * 19 18 17 41 41 H 1.07999 * 120.14145 * 0.03564 * 22 17 16 42 42 H 1.09011 * 109.86994 * 283.00807 * 25 23 21 43 43 H 1.08996 * 109.87873 * 161.95129 * 25 23 21 44 44 H 1.09001 * 109.48721 * 176.01983 * 26 25 23 45 45 H 1.08998 * 109.50131 * 55.97202 * 26 25 23 46 46 H 1.09002 * 109.12067 * 277.96479 * 27 20 19 47 47 H 1.09003 * 109.12116 * 37.11132 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6343 -1.6016 -1.1316 6 6 1.7233 -0.2227 -2.4825 7 7 1.9522 -0.9571 -3.5492 8 14 0.9793 1.4812 -2.6637 9 1 2.0640 2.4952 -2.6842 10 1 0.2104 1.5532 -3.9321 11 1 0.0722 1.7496 -1.5190 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5767 -1.4794 3.7810 16 7 1.4280 0.1442 4.7700 17 6 1.8456 -0.2737 6.0390 18 6 2.0437 0.6595 7.0502 19 6 2.4562 0.2545 8.3045 20 6 2.6763 -1.0852 8.5721 21 6 2.4760 -2.0273 7.5615 22 6 2.0623 -1.6187 6.2911 23 6 2.6987 -3.4614 7.8312 24 8 2.3398 -4.3112 7.0442 25 6 3.3907 -3.8341 9.1260 26 6 2.7977 -2.9521 10.2328 27 6 3.1306 -1.4902 9.9480 28 1 -0.3634 0.6464 0.7990 29 1 -0.3634 0.3687 -0.9592 30 1 -0.3634 -1.0151 0.1603 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.7345 -0.6141 -4.4300 35 1 3.1300 -0.7209 1.2494 36 1 1.6767 -1.7490 1.2492 37 1 0.9943 0.7582 2.3565 38 1 0.8150 0.8909 4.6826 39 1 1.8690 1.7073 6.8552 40 1 2.6085 0.9885 9.0819 41 1 1.9103 -2.3484 5.5096 42 1 4.4618 -3.6506 9.0398 43 1 3.2111 -4.8848 9.3531 44 1 3.2218 -3.2411 11.1944 45 1 1.7156 -3.0802 10.2594 46 1 4.2086 -1.3481 10.0243 47 1 2.6344 -0.8614 10.6874 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459441663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:32 Heat of formation + Delta-G solvation = -31.889361 kcal Electronic energy + Delta-G solvation = -27834.375490 eV Core-core repulsion = 23982.420892 eV Total energy + Delta-G solvation = -3851.954598 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.93791 -39.93095 -38.31399 -37.04501 -35.97535 -34.13767 -33.35992 -31.59788 -31.32482 -29.96415 -27.93756 -26.43690 -25.92238 -24.89882 -23.83007 -23.12714 -21.81921 -20.81641 -19.58542 -19.20554 -18.32370 -17.42690 -16.45864 -16.12418 -15.90767 -15.53377 -15.37438 -15.29720 -14.93705 -14.59093 -14.47218 -14.09271 -13.99063 -13.68882 -13.46718 -13.33084 -13.05772 -12.94689 -12.63954 -12.39988 -12.24462 -12.12022 -12.06042 -11.61268 -11.52478 -11.37822 -11.22033 -10.46604 -10.37790 -10.29176 -10.16949 -10.07116 -9.87029 -9.73687 -9.15314 -9.13320 -8.72288 -8.68919 -8.50386 -8.08855 -6.15672 -4.14232 0.50956 1.15735 2.22290 2.71217 3.21257 3.24890 3.28031 3.36556 3.64490 3.82407 4.28882 4.33229 4.37405 4.38767 4.57133 4.69261 4.77951 4.95140 5.05151 5.14747 5.18672 5.23528 5.33231 5.43209 5.48461 5.63535 5.69549 5.71398 5.76425 5.99755 6.03188 6.05514 6.12662 6.21246 6.30626 6.34848 6.40007 6.48584 6.57846 6.66219 6.73164 6.85668 6.90568 7.03165 7.18318 7.39075 7.39705 7.69327 8.09816 8.43571 8.70529 8.89357 9.47066 10.97409 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.026837 B = 0.002376 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.074064 B =11784.034664 C =12526.145367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.028 3.972 3 C -0.146 4.146 4 C -0.512 4.512 5 H 0.078 0.922 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.884 3.116 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.247 1.247 12 C 0.158 3.842 13 N -0.730 5.730 14 C 0.696 3.304 15 O -0.574 6.574 16 N -0.693 5.693 17 C 0.158 3.842 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.057 4.057 21 C -0.152 4.152 22 C -0.061 4.061 23 C 0.397 3.603 24 O -0.445 6.445 25 C -0.164 4.164 26 C -0.113 4.113 27 C -0.084 4.084 28 H 0.021 0.979 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.028 0.972 34 H 0.265 0.735 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.394 0.606 38 H 0.406 0.594 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.155 0.845 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.834 5.042 29.274 29.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 C -0.202 4.202 4 C -0.550 4.550 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.528 5.528 8 Si 0.717 3.283 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.173 1.173 12 C 0.036 3.964 13 N -0.384 5.384 14 C 0.396 3.604 15 O -0.451 6.451 16 N -0.341 5.341 17 C 0.063 3.937 18 C -0.139 4.139 19 C -0.134 4.134 20 C -0.059 4.059 21 C -0.154 4.154 22 C -0.082 4.082 23 C 0.274 3.726 24 O -0.319 6.319 25 C -0.201 4.201 26 C -0.151 4.151 27 C -0.120 4.120 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.228 0.772 38 H 0.241 0.759 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.172 0.828 42 H 0.120 0.880 43 H 0.112 0.888 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.101 0.899 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.380 3.647 28.603 28.837 hybrid contribution -0.846 1.962 -0.520 2.199 sum -1.226 5.608 28.083 28.664 Atomic orbital electron populations 1.22365 0.97843 0.99957 1.00089 1.18738 0.92535 0.92301 0.93713 1.22316 1.01277 0.98249 0.98408 1.20709 1.34069 1.12330 0.87899 0.90442 1.24978 0.94797 0.97258 0.95763 1.69930 1.48018 1.36352 0.98520 0.87341 0.79532 0.85289 0.76179 1.21382 1.23355 1.17275 1.21475 0.98570 0.95591 0.80777 1.45531 1.55415 1.32939 1.04532 1.16048 0.80627 0.83133 0.80552 1.90939 1.42270 1.26484 1.85391 1.42674 1.50419 1.37551 1.03429 1.17410 0.99411 0.92533 0.84375 1.21059 1.00721 0.98863 0.93209 1.20791 1.01006 0.95088 0.96518 1.19965 0.97953 0.92902 0.95039 1.20165 1.05909 0.95026 0.94267 1.21676 0.94971 0.95329 0.96192 1.22736 0.75477 0.87800 0.86636 1.90574 1.40970 1.52807 1.47590 1.22315 1.01906 1.01893 0.94025 1.21494 1.01675 0.93782 0.98143 1.20448 1.01951 0.96627 0.93009 0.96036 0.92238 0.93307 0.92712 0.94099 0.95295 0.92522 0.91888 0.91744 0.77153 0.75882 0.85310 0.85185 0.82793 0.87967 0.88811 0.90204 0.91166 0.89858 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 7.52 37.16 0.28 -2.63 16 2 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 3 C -0.15 -2.89 7.58 37.15 0.28 -2.61 16 4 C -0.51 -13.70 8.62 -34.44 -0.30 -14.00 16 5 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 6 C 0.07 2.07 5.35 -17.82 -0.10 1.97 16 7 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 8 Si 0.88 20.85 22.75 -169.99 -3.87 16.99 16 9 H -0.29 -6.73 7.07 56.52 0.40 -6.33 16 10 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.25 -5.24 4.61 56.52 0.26 -4.98 16 12 C 0.16 3.16 4.49 -4.04 -0.02 3.14 16 13 N -0.73 -11.72 5.01 -65.22 -0.33 -12.05 16 14 C 0.70 11.55 8.41 -86.91 -0.73 10.82 16 15 O -0.57 -11.92 13.79 5.29 0.07 -11.84 16 16 N -0.69 -8.55 5.35 -14.26 -0.08 -8.62 16 17 C 0.16 1.99 6.29 -83.73 -0.53 1.46 16 18 C -0.12 -1.09 9.95 -39.34 -0.39 -1.48 16 19 C -0.12 -0.93 9.64 -39.58 -0.38 -1.31 16 20 C -0.06 -0.52 5.78 -104.18 -0.60 -1.12 16 21 C -0.15 -1.88 5.82 -105.01 -0.61 -2.49 16 22 C -0.06 -0.90 8.25 -38.92 -0.32 -1.22 16 23 C 0.40 4.97 6.89 -30.10 -0.21 4.76 16 24 O -0.45 -7.40 17.26 5.58 0.10 -7.30 16 25 C -0.16 -1.27 6.18 -27.28 -0.17 -1.44 16 26 C -0.11 -0.63 5.90 -26.70 -0.16 -0.78 16 27 C -0.08 -0.47 5.70 -28.20 -0.16 -0.63 16 28 H 0.02 0.35 7.12 -51.93 -0.37 -0.02 16 29 H 0.06 1.27 4.09 -51.93 -0.21 1.06 16 30 H 0.05 0.98 8.12 -51.93 -0.42 0.55 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.04 0.86 2.36 -51.92 -0.12 0.74 16 33 H 0.03 0.46 6.86 -51.93 -0.36 0.11 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.39 5.28 6.27 -40.82 -0.26 5.03 16 38 H 0.41 3.51 8.84 -40.82 -0.36 3.15 16 39 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.15 2.81 5.89 -52.49 -0.31 2.50 16 42 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.32 8.11 -51.93 -0.42 -0.10 16 LS Contribution 364.97 15.07 5.50 5.50 Total: -1.00 -34.24 364.97 -8.77 -43.01 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -6.75 Total: 7.23 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -4.19 Total: -7.02 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.37 Total: -46.56 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.17 Total: -19.14 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -3.87 Total: 16.99 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.24 -8.77 -43.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459441663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.118 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds