Wall clock time and date at job start Tue Mar 31 2020 16:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47152 * 2 1 4 4 C 1.50699 * 109.46900 * 240.00089 * 2 1 3 5 5 H 1.08004 * 119.99911 * 241.40877 * 4 2 1 6 6 C 1.37873 * 120.00282 * 61.40566 * 4 2 1 7 7 N 1.31510 * 120.00161 * 192.03160 * 6 4 2 8 8 Si 1.86804 * 119.99964 * 12.02690 * 6 4 2 9 9 H 1.48499 * 109.46692 * 84.63904 * 8 6 4 10 10 H 1.48495 * 109.46989 * 204.63759 * 8 6 4 11 11 H 1.48504 * 109.47058 * 324.64070 * 8 6 4 12 12 C 1.53006 * 109.47112 * 120.00199 * 2 1 3 13 13 N 1.46502 * 109.46775 * 299.99901 * 12 2 1 14 14 C 1.34776 * 119.99587 * 180.02562 * 13 12 2 15 15 O 1.21585 * 120.00036 * 359.97438 * 14 13 12 16 16 N 1.34781 * 119.99849 * 180.02562 * 14 13 12 17 17 C 1.39975 * 120.00038 * 184.69443 * 16 14 13 18 18 C 1.39022 * 120.10169 * 144.75350 * 17 16 14 19 19 C 1.38112 * 120.41764 * 180.02562 * 18 17 16 20 20 C 1.38378 * 120.46933 * 359.91937 * 19 18 17 21 21 C 1.39604 * 119.37071 * 359.93304 * 20 19 18 22 22 C 1.38547 * 120.09917 * 324.73098 * 17 16 14 23 23 C 1.47615 * 120.11156 * 180.33585 * 21 20 19 24 24 O 1.21253 * 121.17686 * 168.60197 * 23 21 20 25 25 C 1.51473 * 117.65364 * 348.63024 * 23 21 20 26 26 C 1.53439 * 107.37362 * 42.47405 * 25 23 21 27 27 C 1.50447 * 119.04642 * 179.75197 * 20 19 18 28 28 H 1.09004 * 109.47155 * 308.97221 * 1 2 3 29 29 H 1.08996 * 109.47389 * 68.97304 * 1 2 3 30 30 H 1.09006 * 109.47427 * 188.97373 * 1 2 3 31 31 H 1.09001 * 109.47427 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.47161 * 299.99993 * 3 2 1 33 33 H 1.09002 * 109.47413 * 60.00057 * 3 2 1 34 34 H 0.96997 * 120.00293 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46548 * 180.02562 * 12 2 1 36 36 H 1.08998 * 109.47242 * 60.00014 * 12 2 1 37 37 H 0.97000 * 120.00432 * 359.97438 * 13 12 2 38 38 H 0.97002 * 120.00094 * 4.68576 * 16 14 13 39 39 H 1.08003 * 119.79455 * 0.34888 * 18 17 16 40 40 H 1.07997 * 119.76919 * 179.89840 * 19 18 17 41 41 H 1.07999 * 120.14145 * 0.03564 * 22 17 16 42 42 H 1.09011 * 109.86994 * 283.00807 * 25 23 21 43 43 H 1.08996 * 109.87873 * 161.95129 * 25 23 21 44 44 H 1.09001 * 109.48721 * 176.01983 * 26 25 23 45 45 H 1.08998 * 109.50131 * 55.97202 * 26 25 23 46 46 H 1.09002 * 109.12067 * 277.96479 * 27 20 19 47 47 H 1.09003 * 109.12116 * 37.11132 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6343 -1.6016 -1.1316 6 6 1.7233 -0.2227 -2.4825 7 7 1.9522 -0.9571 -3.5492 8 14 0.9793 1.4812 -2.6637 9 1 2.0640 2.4952 -2.6842 10 1 0.2104 1.5532 -3.9321 11 1 0.0722 1.7496 -1.5190 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5767 -1.4794 3.7810 16 7 1.4280 0.1442 4.7700 17 6 1.8456 -0.2737 6.0390 18 6 2.0437 0.6595 7.0502 19 6 2.4562 0.2545 8.3045 20 6 2.6763 -1.0852 8.5721 21 6 2.4760 -2.0273 7.5615 22 6 2.0623 -1.6187 6.2911 23 6 2.6987 -3.4614 7.8312 24 8 2.3398 -4.3112 7.0442 25 6 3.3907 -3.8341 9.1260 26 6 2.7977 -2.9521 10.2328 27 6 3.1306 -1.4902 9.9480 28 1 -0.3634 0.6464 0.7990 29 1 -0.3634 0.3687 -0.9592 30 1 -0.3634 -1.0151 0.1603 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.7345 -0.6141 -4.4300 35 1 3.1300 -0.7209 1.2494 36 1 1.6767 -1.7490 1.2492 37 1 0.9943 0.7582 2.3565 38 1 0.8150 0.8909 4.6826 39 1 1.8690 1.7073 6.8552 40 1 2.6085 0.9885 9.0819 41 1 1.9103 -2.3484 5.5096 42 1 4.4618 -3.6506 9.0398 43 1 3.2111 -4.8848 9.3531 44 1 3.2218 -3.2411 11.1944 45 1 1.7156 -3.0802 10.2594 46 1 4.2086 -1.3481 10.0243 47 1 2.6344 -0.8614 10.6874 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459441663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:31 Heat of formation + Delta-G solvation = -56.909468 kcal Electronic energy + Delta-G solvation = -27835.460443 eV Core-core repulsion = 23982.420892 eV Total energy + Delta-G solvation = -3853.039551 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.94633 -41.04831 -39.39563 -38.53781 -36.90780 -35.30348 -34.82706 -33.43713 -32.22298 -30.76293 -28.75654 -28.04060 -27.47214 -26.85418 -24.69792 -23.92487 -22.61035 -22.02366 -21.03053 -20.31076 -19.61578 -18.43796 -18.08495 -17.35416 -17.09518 -16.68373 -16.61325 -16.57542 -15.87953 -15.70645 -15.56803 -15.37495 -15.07083 -14.83662 -14.65161 -14.49857 -14.38090 -14.06454 -13.99616 -13.80640 -13.72216 -13.28848 -12.98808 -12.82389 -12.40789 -12.28489 -12.19577 -12.02219 -11.93053 -11.80258 -11.77687 -11.43219 -11.10785 -11.03508 -10.65801 -10.62290 -10.41338 -10.13402 -9.98256 -9.00654 -8.30944 -6.34581 -0.34576 0.30819 1.33912 1.35409 1.37102 1.50709 1.54253 2.00776 2.33940 2.78040 2.98741 3.04989 3.24368 3.72680 3.78865 3.95250 4.02617 4.09922 4.17793 4.22613 4.29006 4.34219 4.38432 4.55199 4.62213 4.70752 4.78067 4.79789 4.82160 4.84092 4.90888 4.95882 5.03618 5.05904 5.13572 5.16431 5.26951 5.30705 5.33136 5.38258 5.47324 5.49277 5.51490 5.69677 5.77172 5.92791 5.97949 6.28489 6.48189 6.69875 6.97938 7.30488 7.44491 8.86465 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.026837 B = 0.002376 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.074064 B =11784.034664 C =12526.145367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.029 3.971 3 C -0.144 4.144 4 C -0.519 4.519 5 H 0.024 0.976 6 C 0.013 3.987 7 N -0.949 5.949 8 Si 0.946 3.054 9 H -0.280 1.280 10 H -0.316 1.316 11 H -0.197 1.197 12 C 0.176 3.824 13 N -0.716 5.716 14 C 0.694 3.306 15 O -0.624 6.624 16 N -0.671 5.671 17 C 0.130 3.870 18 C -0.099 4.099 19 C -0.107 4.107 20 C -0.042 4.042 21 C -0.181 4.181 22 C -0.098 4.098 23 C 0.386 3.614 24 O -0.509 6.509 25 C -0.158 4.158 26 C -0.109 4.109 27 C -0.084 4.084 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.045 0.955 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.265 0.735 35 H 0.041 0.959 36 H 0.035 0.965 37 H 0.412 0.588 38 H 0.427 0.573 39 H 0.166 0.834 40 H 0.178 0.822 41 H 0.101 0.899 42 H 0.120 0.880 43 H 0.096 0.904 44 H 0.113 0.887 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.709 10.010 34.369 35.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 C -0.201 4.201 4 C -0.557 4.557 5 H 0.042 0.958 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.775 3.225 9 H -0.207 1.207 10 H -0.245 1.245 11 H -0.121 1.121 12 C 0.052 3.948 13 N -0.372 5.372 14 C 0.395 3.605 15 O -0.504 6.504 16 N -0.321 5.321 17 C 0.036 3.964 18 C -0.120 4.120 19 C -0.125 4.125 20 C -0.043 4.043 21 C -0.183 4.183 22 C -0.119 4.119 23 C 0.268 3.732 24 O -0.388 6.388 25 C -0.196 4.196 26 C -0.146 4.146 27 C -0.120 4.120 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.250 0.750 38 H 0.266 0.734 39 H 0.184 0.816 40 H 0.195 0.805 41 H 0.119 0.881 42 H 0.138 0.862 43 H 0.114 0.886 44 H 0.131 0.869 45 H 0.081 0.919 46 H 0.122 0.878 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.288 8.681 33.792 34.914 hybrid contribution -0.480 0.290 -1.962 2.040 sum -1.768 8.972 31.831 33.118 Atomic orbital electron populations 1.22288 0.95931 1.00633 1.01274 1.18654 0.93893 0.93307 0.91385 1.22240 1.01002 0.96463 1.00395 1.21026 1.32981 1.11026 0.90680 0.95773 1.25934 0.95600 1.01830 0.95061 1.70109 1.50590 1.38894 0.99241 0.86341 0.79602 0.79335 0.77247 1.20710 1.24525 1.12055 1.20934 0.97156 0.94555 0.82203 1.45061 1.55660 1.33191 1.03243 1.16201 0.80228 0.82701 0.81414 1.90935 1.44505 1.28781 1.86160 1.42315 1.50138 1.37353 1.02280 1.17637 1.01386 0.92339 0.85069 1.21480 0.98354 0.99771 0.92356 1.21383 0.98794 0.95366 0.96986 1.20474 0.95311 0.92784 0.95708 1.20352 1.07532 0.95801 0.94570 1.21440 0.98169 0.95830 0.96463 1.23691 0.74156 0.87802 0.87585 1.90541 1.44023 1.54266 1.49974 1.22392 1.02310 1.02828 0.92032 1.21550 1.01308 0.93448 0.98309 1.20635 1.03439 0.96845 0.91090 0.91234 0.93143 0.94358 0.93543 0.94592 0.90449 0.92648 0.94090 0.94640 0.74979 0.73393 0.81625 0.80480 0.88089 0.86239 0.88593 0.86884 0.91888 0.87762 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 7.52 71.98 0.54 -4.90 16 2 C 0.03 1.23 0.50 -52.93 -0.03 1.21 16 3 C -0.14 -5.30 7.58 71.98 0.55 -4.75 16 4 C -0.52 -29.18 8.62 25.60 0.22 -28.96 16 5 H 0.02 1.55 7.99 -2.91 -0.02 1.53 16 6 C 0.01 0.73 5.35 84.65 0.45 1.19 16 7 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 8 Si 0.95 42.48 22.75 68.60 1.56 44.04 16 9 H -0.28 -12.25 7.07 99.48 0.70 -11.54 16 10 H -0.32 -14.69 7.11 99.48 0.71 -13.98 16 11 H -0.20 -7.31 4.61 99.48 0.46 -6.86 16 12 C 0.18 7.29 4.49 86.38 0.39 7.68 16 13 N -0.72 -22.39 5.01 -478.52 -2.40 -24.78 16 14 C 0.69 23.46 8.41 179.05 1.51 24.96 16 15 O -0.62 -28.00 13.79 -3.98 -0.05 -28.06 16 16 N -0.67 -15.78 5.35 -317.28 -1.70 -17.47 16 17 C 0.13 3.18 6.29 38.10 0.24 3.41 16 18 C -0.10 -1.43 9.95 22.43 0.22 -1.21 16 19 C -0.11 -1.17 9.64 22.27 0.21 -0.95 16 20 C -0.04 -0.61 5.78 -19.58 -0.11 -0.73 16 21 C -0.18 -4.57 5.82 -20.12 -0.12 -4.69 16 22 C -0.10 -3.11 8.25 22.70 0.19 -2.92 16 23 C 0.39 10.39 6.89 28.41 0.20 10.58 16 24 O -0.51 -19.14 17.26 -2.95 -0.05 -19.19 16 25 C -0.16 -2.30 6.18 30.24 0.19 -2.11 16 26 C -0.11 -0.82 5.90 30.61 0.18 -0.64 16 27 C -0.08 -0.50 5.70 29.64 0.17 -0.34 16 28 H 0.07 1.96 7.12 -2.38 -0.02 1.94 16 29 H 0.05 2.00 4.09 -2.39 -0.01 1.99 16 30 H 0.04 1.50 8.12 -2.38 -0.02 1.49 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.04 1.37 2.36 -2.38 -0.01 1.37 16 33 H 0.08 2.09 6.86 -2.39 -0.02 2.08 16 34 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.41 9.58 6.27 -92.71 -0.58 9.00 16 38 H 0.43 6.03 8.84 -92.71 -0.82 5.21 16 39 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.18 0.39 8.06 -2.91 -0.02 0.36 16 41 H 0.10 4.25 5.89 -2.91 -0.02 4.24 16 42 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.10 1.33 8.14 -2.39 -0.02 1.32 16 44 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.10 0.33 8.14 -2.39 -0.02 0.32 16 47 H 0.11 0.08 8.11 -2.39 -0.02 0.06 16 Total: -1.00 -88.32 364.97 2.02 -86.30 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -0.63 Total: 21.84 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 4.99 Total: -3.15 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -3.79 Total: -101.79 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: -0.11 Total: -47.25 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.56 Total: 44.04 kcal Total: -88.32 2.02 -86.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459441663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.388 kcal (2) G-P(sol) polarization free energy of solvation -88.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds