Wall clock time and date at job start Tue Mar 31 2020 16:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53007 * 109.47256 * 2 1 4 4 C 1.52999 * 109.47224 * 239.99755 * 2 1 3 5 5 N 1.46504 * 109.47320 * 119.99728 * 2 1 3 6 6 C 1.46821 * 124.33625 * 179.97438 * 5 2 1 7 7 C 1.54478 * 105.44079 * 197.00276 * 6 5 2 8 8 C 1.54622 * 101.80052 * 334.62852 * 7 6 5 9 9 H 1.09003 * 110.48420 * 143.46153 * 8 7 6 10 10 N 1.46500 * 110.48732 * 265.97117 * 8 7 6 11 11 C 1.34780 * 120.00242 * 205.00430 * 10 8 7 12 12 O 1.21552 * 119.99584 * 359.97438 * 11 10 8 13 13 C 1.47882 * 120.00022 * 180.02562 * 11 10 8 14 14 C 1.39915 * 120.02841 * 359.72308 * 13 11 10 15 15 C 1.38331 * 120.36029 * 179.78812 * 14 13 11 16 16 C 1.37754 * 120.40930 * 0.46718 * 15 14 13 17 17 C 1.40747 * 120.03827 * 359.78312 * 16 15 14 18 18 C 1.41444 * 120.17537 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99993 * 24.44554 * 18 17 16 20 20 C 1.39935 * 119.99987 * 204.45246 * 18 17 16 21 21 N 1.30831 * 119.99939 * 17.88704 * 20 18 17 22 22 Si 1.86804 * 119.99802 * 197.88556 * 20 18 17 23 23 H 1.48505 * 109.46865 * 90.00049 * 22 20 18 24 24 H 1.48499 * 109.46948 * 209.99572 * 22 20 18 25 25 H 1.48496 * 109.47246 * 330.00276 * 22 20 18 26 26 C 1.39000 * 120.02416 * 179.97438 * 13 11 10 27 27 C 1.34414 * 124.34505 * 359.97438 * 5 2 1 28 28 O 1.21288 * 124.94624 * 359.54674 * 27 5 2 29 29 H 1.09007 * 109.47345 * 300.00011 * 1 2 3 30 30 H 1.09003 * 109.47207 * 60.00108 * 1 2 3 31 31 H 1.09003 * 109.47675 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47232 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46645 * 299.99709 * 3 2 1 34 34 H 1.08990 * 109.46963 * 59.99743 * 3 2 1 35 35 H 1.08993 * 109.47220 * 300.00177 * 4 2 1 36 36 H 1.09003 * 109.46917 * 59.99959 * 4 2 1 37 37 H 1.09003 * 109.47304 * 179.97438 * 4 2 1 38 38 H 1.08997 * 110.23486 * 78.02294 * 6 5 2 39 39 H 1.08997 * 110.28089 * 316.00431 * 6 5 2 40 40 H 1.09006 * 110.96547 * 216.49379 * 7 6 5 41 41 H 1.08995 * 110.96991 * 92.77292 * 7 6 5 42 42 H 0.97006 * 120.00013 * 24.99628 * 10 8 7 43 43 H 1.08001 * 119.81796 * 359.97438 * 14 13 11 44 44 H 1.07998 * 119.79541 * 180.23364 * 15 14 13 45 45 H 1.07997 * 119.97484 * 179.76632 * 16 15 14 46 46 H 0.97003 * 119.99385 * 180.02562 * 21 20 18 47 47 H 1.08002 * 120.19650 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 3.4374 -0.8793 1.5221 7 6 3.4695 -1.9971 2.5879 8 6 2.0642 -1.8713 3.2205 9 1 1.6720 -2.8553 3.4773 10 7 2.1111 -1.0137 4.4073 11 6 1.1851 -1.1533 5.3767 12 8 0.3109 -1.9905 5.2659 13 6 1.2322 -0.2872 6.5744 14 6 2.2410 0.6735 6.7046 15 6 2.2890 1.4902 7.8201 16 6 1.3501 1.3610 8.8198 17 6 0.3309 0.3967 8.7088 18 6 -0.6349 0.2619 9.7333 19 1 -0.8540 1.0970 10.3822 20 6 -1.3065 -0.9535 9.9063 21 7 -0.8209 -2.0495 9.3821 22 14 -2.8962 -1.0111 10.8855 23 1 -4.0474 -0.7897 9.9739 24 1 -3.0287 -2.3392 11.5365 25 1 -2.8764 0.0498 11.9244 26 6 0.2772 -0.4304 7.5742 27 6 1.2248 -1.2326 2.1361 28 8 0.0122 -1.2122 2.1176 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1299 -0.7209 -1.2494 38 1 3.8566 0.0412 1.9282 39 1 3.9909 -1.1877 0.6353 40 1 4.2483 -1.8090 3.3270 41 1 3.6025 -2.9745 2.1242 42 1 2.8087 -0.3454 4.4956 43 1 2.9846 0.7799 5.9287 44 1 3.0696 2.2312 7.9094 45 1 1.3965 1.9998 9.6894 46 1 -1.2867 -2.8919 9.5017 47 1 -0.5012 -1.1731 7.4795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565008708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:31 Heat of formation + Delta-G solvation = -48.731447 kcal Electronic energy + Delta-G solvation = -28571.961166 eV Core-core repulsion = 24719.276240 eV Total energy + Delta-G solvation = -3852.684926 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.99957 -38.98315 -37.09912 -36.67550 -36.03906 -33.79541 -33.18042 -30.45399 -29.52045 -29.36660 -27.70808 -27.59785 -26.77857 -25.26301 -22.80520 -22.41199 -21.15980 -20.79018 -19.69923 -18.64768 -17.80638 -16.95177 -16.50313 -16.01321 -15.38783 -15.19920 -14.88442 -14.62663 -14.58600 -14.30626 -14.04380 -13.80392 -13.47069 -13.21431 -13.19568 -13.04140 -12.73922 -12.56021 -12.48514 -12.28507 -12.05840 -11.84776 -11.72302 -11.64289 -11.44141 -11.28074 -11.20435 -11.15273 -11.06671 -10.73120 -10.48502 -10.00960 -9.81356 -9.68888 -9.20508 -9.03041 -8.75530 -8.54682 -7.63218 -7.51807 -6.79209 -4.40483 2.19531 2.53370 2.80445 2.83349 3.09505 3.12723 3.17466 3.74056 3.84874 3.93610 4.23539 4.30483 4.58917 4.63072 4.67920 4.75909 4.81457 4.88566 5.16407 5.27159 5.37242 5.47109 5.47391 5.53976 5.59671 5.60360 5.62738 5.64226 5.75558 5.80084 5.88974 6.06759 6.08727 6.25778 6.26597 6.60714 6.71506 6.72346 6.98855 7.01501 7.10360 7.21851 7.38302 7.69220 7.74006 7.92033 8.04895 8.18833 8.28473 8.51124 8.81013 8.84064 8.93488 10.15582 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018182 B = 0.002931 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.581433 B = 9549.668263 C =10005.321040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.173 3.827 3 C -0.157 4.157 4 C -0.156 4.156 5 N -0.613 5.613 6 C 0.102 3.898 7 C -0.141 4.141 8 C 0.117 3.883 9 H 0.119 0.881 10 N -0.720 5.720 11 C 0.565 3.435 12 O -0.528 6.528 13 C -0.126 4.126 14 C -0.219 4.219 15 C -0.097 4.097 16 C -0.213 4.213 17 C 0.099 3.901 18 C -0.459 4.459 19 H 0.082 0.918 20 C 0.073 3.927 21 N -0.782 5.782 22 Si 0.911 3.089 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.090 4.090 27 C 0.507 3.493 28 O -0.503 6.503 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.401 0.599 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.285 0.715 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.577 2.004 -17.655 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.090 3.910 3 C -0.215 4.215 4 C -0.214 4.214 5 N -0.350 5.350 6 C -0.021 4.021 7 C -0.180 4.180 8 C 0.007 3.993 9 H 0.137 0.863 10 N -0.377 5.377 11 C 0.355 3.645 12 O -0.404 6.404 13 C -0.129 4.129 14 C -0.239 4.239 15 C -0.115 4.115 16 C -0.233 4.233 17 C 0.096 3.904 18 C -0.488 4.488 19 H 0.100 0.900 20 C -0.146 4.146 21 N -0.406 5.406 22 Si 0.735 3.265 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.110 4.110 27 C 0.292 3.708 28 O -0.375 6.375 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.238 0.762 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.096 0.904 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.181 1.161 -17.807 20.068 hybrid contribution -0.088 0.270 0.395 0.487 sum 9.093 1.431 -17.412 19.695 Atomic orbital electron populations 1.22105 0.92133 1.03641 1.02089 1.20442 0.95403 0.91480 0.83687 1.22186 1.01261 0.95294 1.02748 1.22177 1.01265 1.01054 0.96893 1.48456 1.07023 1.56893 1.22672 1.22037 0.82543 0.98777 0.98743 1.22928 0.96750 0.99864 0.98410 1.21478 0.95344 0.97092 0.85357 0.86328 1.45748 1.33242 1.39953 1.18737 1.18926 0.80001 0.83068 0.82458 1.90738 1.35097 1.35653 1.78906 1.19414 0.99970 0.98818 0.94699 1.20296 1.01470 1.02010 1.00144 1.20419 0.98227 0.98312 0.94569 1.21092 0.97735 1.04979 0.99456 1.17600 0.90822 0.90315 0.91625 1.19603 1.17812 0.97695 1.13686 0.90033 1.25973 0.98378 0.95021 0.95265 1.69788 1.36019 0.99617 1.35172 0.86265 0.81727 0.78477 0.80022 1.19101 1.20206 1.18583 1.21649 0.97927 1.00422 0.91041 1.21370 0.87883 0.78489 0.83035 1.90755 1.12749 1.57628 1.76384 0.91071 0.92562 0.91290 0.92324 0.91422 0.91963 0.92141 0.91390 0.92319 0.91108 0.90256 0.88261 0.88708 0.76233 0.89380 0.88924 0.88615 0.90396 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 6.99 37.15 0.26 -1.49 16 2 C 0.17 1.75 1.20 -131.82 -0.16 1.59 16 3 C -0.16 -1.34 8.54 37.16 0.32 -1.02 16 4 C -0.16 -1.18 8.49 37.16 0.32 -0.87 16 5 N -0.61 -6.94 2.76 -157.53 -0.43 -7.38 16 6 C 0.10 0.79 6.60 -3.09 -0.02 0.77 16 7 C -0.14 -1.18 6.78 -25.10 -0.17 -1.35 16 8 C 0.12 1.66 3.28 -67.95 -0.22 1.44 16 9 H 0.12 1.91 7.55 -51.93 -0.39 1.52 16 10 N -0.72 -11.88 5.05 -54.75 -0.28 -12.16 16 11 C 0.56 12.66 7.77 -12.31 -0.10 12.56 16 12 O -0.53 -13.83 15.98 5.32 0.09 -13.74 16 13 C -0.13 -3.01 5.87 -105.04 -0.62 -3.62 16 14 C -0.22 -4.58 9.55 -38.92 -0.37 -4.95 16 15 C -0.10 -2.06 10.01 -39.72 -0.40 -2.46 16 16 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 17 C 0.10 2.64 5.57 -106.87 -0.60 2.05 16 18 C -0.46 -12.19 9.05 -37.73 -0.34 -12.53 16 19 H 0.08 2.05 7.91 -52.49 -0.42 1.64 16 20 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 21 N -0.78 -20.96 10.96 55.55 0.61 -20.35 16 22 Si 0.91 19.12 29.60 -169.99 -5.03 14.08 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 26 C -0.09 -2.45 8.24 -38.44 -0.32 -2.77 16 27 C 0.51 7.96 7.49 -10.86 -0.08 7.88 16 28 O -0.50 -10.17 13.99 5.55 0.08 -10.09 16 29 H 0.07 1.08 7.06 -51.93 -0.37 0.72 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.97 7.08 -51.93 -0.37 0.60 16 32 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.37 7.21 -51.93 -0.37 -0.01 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.44 7.13 -51.93 -0.37 0.07 16 40 H 0.10 0.69 8.06 -51.93 -0.42 0.27 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.40 5.52 6.65 -40.82 -0.27 5.25 16 43 H 0.09 1.49 6.38 -52.49 -0.33 1.15 16 44 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 45 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 46 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 47 H 0.13 3.96 5.74 -52.49 -0.30 3.65 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -33.29 380.09 -9.17 -42.46 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -6.96 Total: 9.89 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.96 Total: -8.44 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: -0.10 Total: -39.89 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.16 Total: -23.83 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.29 -9.17 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565008708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.272 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds