Wall clock time and date at job start Tue Mar 31 2020 16:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46860 * 2 1 4 4 C 1.52993 * 109.46874 * 239.99993 * 2 1 3 5 5 C 1.52997 * 109.47386 * 119.99922 * 2 1 3 6 6 C 1.53003 * 109.47171 * 299.99891 * 5 2 1 7 7 C 1.47199 * 109.46987 * 180.02562 * 5 2 1 8 8 N 3.43553 * 155.17614 * 119.99515 * 2 1 3 9 9 N 1.46494 * 109.47168 * 60.00094 * 5 2 1 10 10 C 1.34780 * 119.99917 * 180.02562 * 9 5 2 11 11 O 1.21282 * 120.00129 * 359.97438 * 10 9 5 12 12 C 1.50702 * 119.99933 * 180.02562 * 10 9 5 13 13 C 1.50701 * 109.47242 * 179.97438 * 12 10 9 14 14 C 1.38299 * 119.93217 * 269.72899 * 13 12 10 15 15 C 1.38093 * 120.06953 * 179.72477 * 14 13 12 16 16 C 1.38883 * 119.92808 * 0.56550 * 15 14 13 17 17 O 1.35754 * 120.06438 * 179.68623 * 16 15 14 18 18 C 1.34826 * 116.99724 * 174.49160 * 17 16 15 19 19 H 1.07998 * 120.00100 * 5.04739 * 18 17 16 20 20 C 1.38654 * 119.99970 * 185.05457 * 18 17 16 21 21 N 1.31562 * 120.00282 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00220 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47275 * 89.99838 * 22 20 18 24 24 H 1.48495 * 109.47094 * 210.00170 * 22 20 18 25 25 H 1.48506 * 109.46791 * 330.00186 * 22 20 18 26 26 C 1.38871 * 119.86468 * 359.70509 * 16 15 14 27 27 C 1.38101 * 119.93230 * 0.02562 * 26 16 15 28 28 H 1.09002 * 109.46935 * 299.99701 * 1 2 3 29 29 H 1.08998 * 109.47498 * 60.00161 * 1 2 3 30 30 H 1.09002 * 109.46635 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47337 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47241 * 300.00181 * 3 2 1 33 33 H 1.08992 * 109.47306 * 59.99645 * 3 2 1 34 34 H 1.08997 * 109.47546 * 299.99384 * 4 2 1 35 35 H 1.09009 * 109.47529 * 59.99941 * 4 2 1 36 36 H 1.09005 * 109.47307 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.47183 * 180.02562 * 6 5 2 38 38 H 1.08997 * 109.47545 * 300.00412 * 6 5 2 39 39 H 1.09001 * 109.46817 * 59.99889 * 6 5 2 40 40 H 0.97002 * 120.00191 * 359.97438 * 9 5 2 41 41 H 1.09002 * 109.47056 * 59.99417 * 12 10 9 42 42 H 1.09001 * 109.46884 * 299.99904 * 12 10 9 43 43 H 1.08005 * 119.96050 * 359.97425 * 14 13 12 44 44 H 1.07999 * 120.03730 * 180.26989 * 15 14 13 45 45 H 0.96996 * 120.00604 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.03853 * 179.97438 * 26 16 15 47 47 H 1.07997 * 119.96732 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0401 -0.7212 1.2492 6 6 1.5302 0.0001 2.4985 7 6 3.5121 -0.7206 1.2494 8 7 4.6481 -0.7211 1.2492 9 7 1.5518 -2.1024 1.2492 10 6 1.8771 -2.9321 2.2604 11 8 2.5744 -2.5354 3.1699 12 6 1.3753 -4.3531 2.2601 13 6 1.8776 -5.0635 3.4906 14 6 3.0838 -5.7390 3.4534 15 6 3.5495 -6.3862 4.5809 16 6 2.7995 -6.3679 5.7497 17 8 3.2517 -7.0085 6.8579 18 6 2.5333 -6.8565 7.9887 19 1 1.5993 -6.3147 7.9663 20 6 2.9936 -7.3957 9.1803 21 7 2.2928 -7.2470 10.2838 22 14 4.6087 -8.3334 9.2189 23 1 5.7212 -7.3917 9.5033 24 1 4.5540 -9.3700 10.2808 25 1 4.8350 -8.9839 7.9032 26 6 1.5861 -5.6934 5.7823 27 6 1.1284 -5.0435 4.6530 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7209 -1.2495 37 1 1.8939 -0.5135 3.3884 38 1 1.8934 1.0277 2.4985 39 1 0.4401 0.0001 2.4985 40 1 0.9938 -2.4196 0.5220 41 1 1.7393 -4.8668 1.3703 42 1 0.2853 -4.3535 2.2594 43 1 3.6640 -5.7571 2.5426 44 1 4.4936 -6.9099 4.5525 45 1 2.6146 -7.6245 11.1173 46 1 1.0004 -5.6778 6.6896 47 1 0.1846 -4.5191 4.6776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274351611.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:53 Heat of formation + Delta-G solvation = -14.082727 kcal Electronic energy + Delta-G solvation = -27919.389178 eV Core-core repulsion = 24068.206733 eV Total energy + Delta-G solvation = -3851.182444 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -40.97185 -39.27508 -38.40434 -36.60217 -35.97284 -33.92671 -32.51625 -31.81702 -30.50044 -30.19966 -28.01145 -27.81561 -26.70308 -25.09259 -24.45584 -22.07991 -21.39772 -20.59959 -19.82241 -18.07225 -17.83940 -17.34820 -17.17282 -15.91649 -15.43076 -15.03982 -14.79846 -14.62951 -14.46327 -14.36269 -13.96677 -13.91646 -13.72932 -13.52781 -13.43704 -12.97444 -12.85501 -12.71107 -12.66946 -12.56020 -12.43115 -12.36133 -12.25964 -12.17246 -11.80006 -11.65638 -11.38008 -11.27801 -11.23578 -11.10661 -10.92202 -10.73468 -10.65109 -10.12974 -9.73268 -9.53443 -9.35564 -8.83204 -8.20866 -7.28415 -6.38925 -4.05182 2.09120 2.18753 2.39284 2.60125 2.64042 3.22411 3.25168 3.29272 3.43036 3.60069 4.00663 4.21859 4.26640 4.39455 4.47710 4.72995 4.76858 4.87801 4.94694 5.11029 5.12327 5.13679 5.18285 5.21465 5.25530 5.32703 5.37208 5.39577 5.42111 5.51639 5.58643 5.62159 5.67002 5.74835 5.77312 5.80041 6.04167 6.13439 6.16015 6.35711 6.59154 6.82121 7.04165 7.23791 7.25511 7.33044 7.43263 7.64582 7.83205 8.06880 8.15194 8.96568 9.59411 10.68768 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.024250 B = 0.002359 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.341035 B =11867.727884 C =11931.091384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.065 4.065 3 C -0.148 4.148 4 C -0.149 4.149 5 C 0.288 3.712 6 C -0.169 4.169 7 C 0.208 3.792 8 N -0.416 5.416 9 N -0.729 5.729 10 C 0.509 3.491 11 O -0.505 6.505 12 C -0.079 4.079 13 C -0.164 4.164 14 C -0.061 4.061 15 C -0.191 4.191 16 C 0.163 3.837 17 O -0.218 6.218 18 C -0.388 4.388 19 H 0.107 0.893 20 C 0.063 3.937 21 N -0.880 5.880 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.219 4.219 27 C -0.056 4.056 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.405 0.595 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.116 0.884 45 H 0.279 0.721 46 H 0.133 0.867 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.915 14.333 -24.682 29.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 C -0.206 4.206 4 C -0.207 4.207 5 C 0.198 3.802 6 C -0.228 4.228 7 C -0.112 4.112 8 N -0.092 5.092 9 N -0.387 5.387 10 C 0.296 3.704 11 O -0.377 6.377 12 C -0.119 4.119 13 C -0.165 4.165 14 C -0.079 4.079 15 C -0.210 4.210 16 C 0.111 3.889 17 O -0.123 6.123 18 C -0.464 4.464 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.518 5.518 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.239 4.239 27 C -0.075 4.075 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.243 0.757 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.127 0.873 44 H 0.134 0.866 45 H 0.089 0.911 46 H 0.150 0.850 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.499 14.388 -23.692 28.259 hybrid contribution -0.049 -0.509 -0.073 0.517 sum -5.548 13.878 -23.765 28.074 Atomic orbital electron populations 1.21965 0.92391 1.02670 1.03102 1.20790 0.97138 0.96143 0.92587 1.21993 1.01450 0.94013 1.03112 1.21984 1.01563 1.00442 0.96695 1.17582 0.80711 0.83968 0.97962 1.22389 1.02437 1.00724 0.97244 1.29173 0.95021 0.94013 0.92983 1.81161 1.12836 1.06731 1.08472 1.46298 1.55120 1.10527 1.26738 1.21209 0.80025 0.87953 0.81190 1.90762 1.35592 1.76480 1.34859 1.20425 1.01939 0.90680 0.98875 1.18667 0.97878 1.05465 0.94471 1.20399 0.94571 0.96180 0.96794 1.20149 1.01274 1.07593 0.92007 1.19122 0.92035 0.90392 0.87385 1.83573 1.50522 1.61770 1.16410 1.20772 1.05390 1.37025 0.83198 0.87604 1.24464 0.99028 0.96978 0.93537 1.69646 1.38672 1.44223 0.99287 0.86187 0.82477 0.79688 0.78596 1.19888 1.20790 1.18368 1.21219 0.98306 1.04574 0.99762 1.20553 0.98165 0.96816 0.91947 0.91284 0.91487 0.91990 0.92450 0.91307 0.91272 0.91995 0.91342 0.92436 0.89197 0.90794 0.90065 0.75744 0.88794 0.88493 0.87336 0.86605 0.91082 0.84954 0.87443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.46 7.95 37.16 0.30 -0.17 16 2 C -0.07 -0.34 0.33 -154.51 -0.05 -0.39 16 3 C -0.15 -0.77 7.87 37.16 0.29 -0.48 16 4 C -0.15 -0.75 8.05 37.15 0.30 -0.45 16 5 C 0.29 2.45 0.19 -134.61 -0.03 2.42 16 6 C -0.17 -1.46 7.65 37.16 0.28 -1.18 16 7 C 0.21 2.62 10.21 -20.76 -0.21 2.41 16 8 N -0.42 -6.49 18.54 42.16 0.78 -5.71 16 9 N -0.73 -5.87 4.49 -50.23 -0.23 -6.09 16 10 C 0.51 6.21 7.24 -10.98 -0.08 6.13 16 11 O -0.50 -8.73 13.24 5.56 0.07 -8.65 16 12 C -0.08 -0.87 5.83 -29.03 -0.17 -1.04 16 13 C -0.16 -2.68 4.38 -104.57 -0.46 -3.14 16 14 C -0.06 -1.08 9.69 -39.61 -0.38 -1.47 16 15 C -0.19 -3.98 9.99 -39.40 -0.39 -4.37 16 16 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 17 O -0.22 -5.92 8.59 0.05 0.00 -5.92 16 18 C -0.39 -11.18 9.95 30.89 0.31 -10.87 16 19 H 0.11 3.10 5.44 -52.49 -0.29 2.81 16 20 C 0.06 1.80 5.49 -17.51 -0.10 1.71 16 21 N -0.88 -25.83 13.96 55.48 0.77 -25.05 16 22 Si 0.90 22.21 28.62 -169.99 -4.86 17.35 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 26 C -0.22 -4.84 9.17 -39.40 -0.36 -5.20 16 27 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16 28 H 0.07 0.22 6.43 -51.93 -0.33 -0.11 16 29 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.15 6.86 -51.93 -0.36 -0.20 16 31 H 0.06 0.40 7.23 -51.93 -0.38 0.02 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.32 6.43 -51.93 -0.33 -0.01 16 34 H 0.06 0.25 6.86 -51.93 -0.36 -0.11 16 35 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 36 H 0.06 0.41 7.23 -51.93 -0.38 0.04 16 37 H 0.09 1.11 6.17 -51.93 -0.32 0.79 16 38 H 0.07 0.54 6.43 -51.93 -0.33 0.21 16 39 H 0.08 0.52 6.43 -51.93 -0.33 0.19 16 40 H 0.41 1.85 6.16 -40.82 -0.25 1.60 16 41 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 42 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 44 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 45 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.13 3.05 5.64 -52.49 -0.30 2.76 16 47 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -35.44 379.45 -5.60 -41.04 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.46 Total: 1.19 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -1.40 Total: -13.88 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 1.33 Total: -36.85 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.07 Total: -14.57 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.86 Total: 17.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.44 -5.60 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274351611.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.956 kcal (2) G-P(sol) polarization free energy of solvation -35.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds