Wall clock time and date at job start Tue Mar 31 2020 15:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47327 * 2 1 4 4 H 1.09003 * 109.47284 * 305.00222 * 3 2 1 5 5 C 1.50701 * 109.47354 * 185.00229 * 3 2 1 6 6 H 1.08001 * 120.00003 * 239.99573 * 5 3 2 7 7 C 1.37877 * 120.00019 * 59.99874 * 5 3 2 8 8 N 1.31516 * 119.99802 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99890 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47030 * 59.99901 * 9 7 5 11 11 H 1.48502 * 109.46980 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46930 * 299.99653 * 9 7 5 13 13 N 1.46499 * 109.47219 * 64.99831 * 3 2 1 14 14 C 1.36837 * 125.06029 * 60.02859 * 13 3 2 15 15 C 1.34238 * 109.92812 * 179.97438 * 14 13 3 16 16 C 1.50705 * 126.49952 * 180.02562 * 15 14 13 17 17 C 1.53005 * 109.46586 * 265.02192 * 16 15 14 18 18 H 1.08994 * 109.47690 * 54.99867 * 17 16 15 19 19 N 1.46900 * 109.46790 * 294.99503 * 17 16 15 20 20 C 1.50705 * 109.46745 * 175.00304 * 17 16 15 21 21 O 1.20817 * 120.00247 * 99.99594 * 20 17 16 22 22 O 1.34226 * 119.99512 * 279.99578 * 20 17 16 23 23 C 1.45200 * 116.99792 * 180.02562 * 22 20 17 24 24 C 1.46490 * 106.99747 * 359.97438 * 15 14 13 25 25 C 1.39637 * 134.02531 * 179.97438 * 24 15 14 26 26 C 1.36625 * 119.75993 * 180.02562 * 25 24 15 27 27 C 1.38832 * 120.52845 * 359.97438 * 26 25 24 28 28 C 1.37743 * 120.66710 * 359.97438 * 27 26 25 29 29 C 1.37691 * 125.06537 * 240.00008 * 13 3 2 30 30 H 1.09000 * 109.47215 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47365 * 299.99871 * 1 2 3 32 32 H 1.08996 * 109.47865 * 59.99847 * 1 2 3 33 33 H 1.08997 * 109.46906 * 239.99910 * 2 1 3 34 34 H 1.08998 * 109.47165 * 119.99929 * 2 1 3 35 35 H 0.96995 * 119.99257 * 179.97438 * 8 7 5 36 36 H 1.08000 * 125.03354 * 359.95539 * 14 13 3 37 37 H 1.08995 * 109.46988 * 25.01491 * 16 15 14 38 38 H 1.08991 * 109.47136 * 145.02061 * 16 15 14 39 39 H 1.00904 * 110.99682 * 176.04724 * 19 17 16 40 40 H 1.00894 * 111.00392 * 300.00453 * 19 17 16 41 41 H 1.09000 * 109.47140 * 179.97438 * 23 22 20 42 42 H 1.08997 * 109.47152 * 299.99646 * 23 22 20 43 43 H 1.09000 * 109.47380 * 59.99889 * 23 22 20 44 44 H 1.07997 * 120.11611 * 0.31131 * 25 24 15 45 45 H 1.08001 * 119.73325 * 180.02562 * 26 25 24 46 46 H 1.08001 * 119.66329 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.11179 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8783 -1.2280 8 7 3.4061 0.3365 -2.1729 9 14 6.0049 0.8800 -1.3812 10 1 6.5966 0.1452 -0.2344 11 1 6.3978 0.2156 -2.6499 12 1 6.5004 2.2799 -1.3810 13 7 1.6524 2.0975 1.2518 14 6 2.0234 1.6847 2.5026 15 6 1.4999 2.5035 3.4286 16 6 1.6714 2.3939 4.9218 17 6 0.4879 1.6275 5.5161 18 1 0.3925 0.6629 5.0177 19 7 -0.7446 2.4030 5.3223 20 6 0.7187 1.4110 6.9895 21 8 0.1781 2.1284 7.7975 22 8 1.5248 0.4211 7.4042 23 6 1.7005 0.2708 8.8377 24 6 0.7314 3.5244 2.7122 25 6 -0.0264 4.6269 3.1121 26 6 -0.6381 5.4065 2.1714 27 6 -0.5118 5.1116 0.8206 28 6 0.2318 4.0295 0.4043 29 6 0.8612 3.2204 1.3449 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8292 -0.0612 -2.9498 36 1 2.6449 0.8270 2.7134 37 1 2.5966 1.8621 5.1432 38 1 1.7130 3.3924 5.3569 39 1 -1.5497 1.8897 5.6485 40 1 -0.6811 3.3022 5.7754 41 1 2.3734 -0.5635 9.0358 42 1 2.1251 1.1862 9.2497 43 1 0.7345 0.0765 9.3037 44 1 -0.1249 4.8653 4.1608 45 1 -1.2238 6.2594 2.4811 46 1 -1.0016 5.7371 0.0890 47 1 0.3237 3.8081 -0.6488 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152605.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:09 Heat of formation + Delta-G solvation = -38.362108 kcal Electronic energy + Delta-G solvation = -28736.295914 eV Core-core repulsion = 24884.060637 eV Total energy + Delta-G solvation = -3852.235277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.82271 -40.46707 -36.96554 -36.60150 -35.63416 -34.28691 -32.03380 -31.10544 -29.66876 -28.85060 -28.32677 -27.44852 -26.19554 -24.14759 -23.08566 -21.92227 -21.02079 -20.73122 -19.93574 -18.55342 -17.91440 -16.97030 -16.70617 -16.56798 -15.93482 -15.80855 -15.44905 -14.79215 -14.57454 -14.25134 -14.05898 -13.67380 -13.48455 -13.45354 -13.20536 -12.81081 -12.60892 -12.42833 -12.19784 -12.14328 -11.78400 -11.65206 -11.47033 -11.38365 -11.20582 -10.99579 -10.95502 -10.84546 -10.70203 -10.67719 -10.34135 -10.10768 -9.98058 -9.86815 -9.29969 -8.94976 -8.74440 -8.60638 -7.35434 -6.73854 -6.25639 -4.37446 1.84936 2.01664 2.38377 2.61864 3.19343 3.24422 3.26819 3.48085 3.93995 4.27168 4.37202 4.62447 4.72376 4.88882 4.94708 5.03324 5.09369 5.21602 5.29221 5.40766 5.55570 5.59816 5.64298 5.87664 5.91147 6.02013 6.05448 6.14551 6.19758 6.21357 6.32417 6.44199 6.51750 6.54195 6.67356 6.78703 6.85282 6.92840 6.96967 7.16309 7.23587 7.28815 7.30837 7.50185 7.54909 7.58374 7.65713 7.72605 7.91494 8.27123 8.32032 8.71161 9.30689 10.77016 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010474 B = 0.003954 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.708447 B = 7079.416805 C = 8618.233930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C 0.263 3.737 4 H 0.053 0.947 5 C -0.535 4.535 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.886 5.886 9 Si 0.903 3.097 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.442 5.442 14 C 0.092 3.908 15 C -0.203 4.203 16 C -0.017 4.017 17 C 0.110 3.890 18 H 0.117 0.883 19 N -0.796 5.796 20 C 0.427 3.573 21 O -0.520 6.520 22 O -0.356 6.356 23 C 0.033 3.967 24 C -0.083 4.083 25 C -0.062 4.062 26 C -0.165 4.165 27 C -0.119 4.119 28 C -0.120 4.120 29 C 0.098 3.902 30 H 0.037 0.963 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.108 0.892 34 H 0.041 0.959 35 H 0.267 0.733 36 H 0.156 0.844 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.341 0.659 40 H 0.348 0.652 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.111 0.889 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 1.136 13.981 15.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C 0.164 3.836 4 H 0.071 0.929 5 C -0.573 4.573 6 H 0.083 0.917 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.730 3.270 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.119 5.119 14 C -0.039 4.039 15 C -0.211 4.211 16 C -0.056 4.056 17 C -0.005 4.005 18 H 0.135 0.865 19 N -0.325 5.325 20 C 0.268 3.732 21 O -0.408 6.408 22 O -0.271 6.271 23 C -0.062 4.062 24 C -0.088 4.088 25 C -0.081 4.081 26 C -0.184 4.184 27 C -0.138 4.138 28 C -0.141 4.141 29 C -0.011 4.011 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.126 0.874 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.173 0.827 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.154 0.846 40 H 0.163 0.837 41 H 0.118 0.882 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.125 0.875 45 H 0.125 0.875 46 H 0.129 0.871 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.548 1.007 12.936 14.111 hybrid contribution 0.859 -0.155 1.092 1.398 sum -4.690 0.852 14.028 14.816 Atomic orbital electron populations 1.21804 0.98469 0.99651 1.00551 1.21943 0.92554 0.98764 1.03406 1.19253 0.95510 0.89908 0.78913 0.92884 1.21292 0.90191 1.39189 1.06602 0.91732 1.24882 0.98916 0.94460 0.95163 1.69840 1.35498 1.37546 1.09440 0.86466 0.84469 0.78529 0.77532 1.19981 1.21039 1.20048 1.44823 1.38260 1.21359 1.07434 1.21458 0.99673 0.99282 0.83445 1.19392 1.08970 1.00336 0.92354 1.19643 0.94503 0.99451 0.91974 1.21634 0.93755 1.00713 0.84368 0.86539 1.59105 1.02273 1.07037 1.64099 1.26130 0.74995 0.77006 0.95085 1.90633 1.47848 1.45687 1.56645 1.86607 1.62324 1.51163 1.27044 1.23247 1.02194 1.02732 0.77995 1.18816 1.01367 0.97054 0.91538 1.19966 0.96337 0.93656 0.98126 1.20384 1.03841 1.01098 0.93095 1.20569 1.00281 0.97344 0.95640 1.20033 1.00194 0.95948 0.97887 1.18314 0.97280 0.90797 0.94695 0.94390 0.93980 0.93720 0.87429 0.94057 0.92292 0.82663 0.90360 0.91360 0.84599 0.83747 0.88188 0.92037 0.92210 0.87536 0.87503 0.87087 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.80 37.16 0.36 -2.48 16 2 C -0.13 -2.80 5.23 -26.74 -0.14 -2.94 16 3 C 0.26 6.13 2.31 -69.09 -0.16 5.97 16 4 H 0.05 1.36 7.34 -51.93 -0.38 0.98 16 5 C -0.53 -13.60 8.48 -34.44 -0.29 -13.89 16 6 H 0.06 1.67 7.71 -52.49 -0.40 1.27 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.89 -23.21 11.29 55.43 0.63 -22.59 16 9 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.44 -9.24 2.10 -108.58 -0.23 -9.47 16 14 C 0.09 1.72 10.07 -16.73 -0.17 1.55 16 15 C -0.20 -3.39 5.32 -102.71 -0.55 -3.93 16 16 C -0.02 -0.23 5.38 -27.88 -0.15 -0.38 16 17 C 0.11 1.30 3.25 -68.86 -0.22 1.08 16 18 H 0.12 1.38 8.14 -51.93 -0.42 0.95 16 19 N -0.80 -9.20 8.39 -5.65 -0.05 -9.25 16 20 C 0.43 5.19 7.19 36.01 0.26 5.45 16 21 O -0.52 -7.27 16.00 -18.74 -0.30 -7.57 16 22 O -0.36 -4.06 10.57 -39.25 -0.41 -4.47 16 23 C 0.03 0.27 10.56 101.05 1.07 1.34 16 24 C -0.08 -1.50 6.19 -105.14 -0.65 -2.15 16 25 C -0.06 -1.00 9.88 -39.64 -0.39 -1.39 16 26 C -0.16 -2.54 9.97 -39.94 -0.40 -2.94 16 27 C -0.12 -1.94 10.01 -39.54 -0.40 -2.34 16 28 C -0.12 -2.28 9.81 -39.43 -0.39 -2.67 16 29 C 0.10 1.98 6.81 -83.99 -0.57 1.41 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.81 7.75 -51.92 -0.40 0.41 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.11 2.62 5.95 -51.93 -0.31 2.31 16 34 H 0.04 0.87 7.72 -51.93 -0.40 0.47 16 35 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.16 2.69 8.03 -52.49 -0.42 2.27 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.34 3.49 9.06 -39.29 -0.36 3.13 16 40 H 0.35 3.94 8.26 -39.29 -0.32 3.62 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 43 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 44 H 0.11 1.48 7.74 -52.49 -0.41 1.08 16 45 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 46 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 47 H 0.11 2.13 7.56 -52.49 -0.40 1.74 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -28.17 391.43 -9.53 -37.70 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -7.17 Total: 11.31 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -2.88 Total: -16.64 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.35 Total: -41.31 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.71 Total: -12.04 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.17 -9.53 -37.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152605.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.660 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds