Wall clock time and date at job start Tue Mar 31 2020 17:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 115.56219 * 2 1 4 4 C 1.53005 * 117.49987 * 145.69004 * 2 1 3 5 5 C 1.53007 * 117.50044 * 214.31365 * 2 1 3 6 6 H 1.09001 * 117.51657 * 359.97438 * 5 2 1 7 7 C 1.50697 * 117.49732 * 145.02174 * 5 2 1 8 8 C 1.34515 * 125.78822 * 240.00852 * 7 5 2 9 9 C 1.41385 * 106.84039 * 180.02562 * 8 7 5 10 10 C 1.34511 * 106.84204 * 0.02562 * 9 8 7 11 11 C 1.50700 * 125.79064 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47172 * 89.99696 * 11 10 9 13 13 C 1.50700 * 109.47172 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99722 * 0.02562 * 13 12 11 15 15 N 1.34771 * 120.00216 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00157 * 180.02562 * 15 13 12 17 17 C 1.50704 * 109.47140 * 270.00107 * 16 15 13 18 18 H 1.07999 * 119.99784 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00204 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99968 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00181 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46983 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47056 * 119.99986 * 21 19 17 24 24 H 1.48498 * 109.47421 * 240.00558 * 21 19 17 25 25 C 1.46496 * 119.99695 * 359.97438 * 15 13 12 26 26 C 1.53002 * 109.47037 * 90.00369 * 25 15 13 27 27 C 1.47206 * 109.47021 * 179.97438 * 26 25 15 28 28 N 7.66623 * 116.65482 * 352.22855 * 2 1 3 29 29 O 1.34305 * 125.79186 * 60.36667 * 7 5 2 30 30 H 1.08999 * 109.47169 * 205.68656 * 1 2 3 31 31 H 1.08993 * 109.47147 * 325.68867 * 1 2 3 32 32 H 1.09003 * 109.46773 * 85.68844 * 1 2 3 33 33 H 1.08996 * 117.49526 * 0.02562 * 4 2 1 34 34 H 1.09003 * 117.49779 * 214.97870 * 4 2 1 35 35 H 1.08001 * 126.57880 * 0.06666 * 8 7 5 36 36 H 1.07998 * 126.57550 * 179.97438 * 9 8 7 37 37 H 1.08998 * 109.46869 * 329.99759 * 11 10 9 38 38 H 1.09000 * 109.46883 * 210.00086 * 11 10 9 39 39 H 1.08998 * 109.47172 * 60.00248 * 12 11 10 40 40 H 1.09000 * 109.47102 * 300.00306 * 12 11 10 41 41 H 1.09000 * 109.47114 * 29.99918 * 16 15 13 42 42 H 1.08997 * 109.47404 * 149.99830 * 16 15 13 43 43 H 0.97005 * 119.99874 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.47565 * 329.99800 * 25 15 13 45 45 H 1.09004 * 109.47374 * 209.99995 * 25 15 13 46 46 H 1.08996 * 109.47407 * 59.99335 * 26 25 15 47 47 H 1.09000 * 109.46986 * 299.99564 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2365 -1.1210 -0.7651 6 1 1.6115 -1.8589 -1.2682 7 6 3.5293 -0.7810 -1.4608 8 6 3.7639 -0.8882 -2.7810 9 6 5.0965 -0.4674 -2.9957 10 6 5.5966 -0.1287 -1.7938 11 6 6.9904 0.3807 -1.5309 12 6 7.0030 1.9073 -1.6326 13 6 8.3969 2.4167 -1.3704 14 8 9.2921 1.6356 -1.1267 15 7 8.6486 3.7402 -1.4067 16 6 10.0037 4.2353 -1.1523 17 6 10.1737 4.4992 0.3217 18 1 9.3541 4.3167 1.0009 19 6 11.3755 4.9735 0.8031 20 7 12.3733 5.1961 -0.0241 21 14 11.5859 5.3012 2.6300 22 1 10.3238 4.9731 3.3404 23 1 12.6861 4.4567 3.1609 24 1 11.9153 6.7337 2.8413 25 6 7.5674 4.6836 -1.7016 26 6 6.8906 5.1078 -0.3966 27 6 5.8045 6.0563 -0.6930 28 7 4.9691 6.7886 -0.9265 29 8 4.6447 -0.3260 -0.8671 30 1 -0.3633 -0.9261 0.4454 31 1 -0.3633 0.8488 0.5792 32 1 -0.3633 0.0773 -1.0248 33 1 1.6112 -1.8587 1.2679 34 1 3.1716 -0.8752 1.2683 35 1 3.0677 -1.2296 -3.5328 36 1 5.6138 -0.4265 -3.9428 37 1 7.6753 -0.0382 -2.2681 38 1 7.3044 0.0805 -0.5313 39 1 6.3181 2.3262 -0.8955 40 1 6.6889 2.2075 -2.6323 41 1 10.7297 3.4885 -1.4738 42 1 10.1631 5.1596 -1.7076 43 1 13.2187 5.5302 0.3145 44 1 6.8351 4.2053 -2.3519 45 1 7.9774 5.5618 -2.2004 46 1 7.6229 5.5862 0.2537 47 1 6.4806 4.2297 0.1022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604470859.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:57 Heat of formation + Delta-G solvation = -0.748669 kcal Electronic energy + Delta-G solvation = -27362.447974 eV Core-core repulsion = 23511.843738 eV Total energy + Delta-G solvation = -3850.604236 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.55847 -40.78919 -38.65980 -38.01442 -36.73066 -35.13067 -34.62208 -33.72361 -32.10513 -30.74279 -29.51760 -28.49326 -26.15439 -25.15916 -24.20992 -22.86972 -22.62235 -21.60966 -20.77122 -19.87207 -19.00025 -18.31036 -17.95991 -17.46618 -17.24086 -16.81317 -16.53525 -16.17482 -15.77234 -15.55094 -15.32972 -15.09193 -14.59608 -14.42288 -14.24640 -13.97254 -13.92499 -13.70548 -13.64938 -13.53424 -13.45525 -13.16921 -13.08254 -12.98028 -12.78009 -12.75191 -12.69202 -12.50364 -12.35796 -12.18469 -12.04832 -11.72707 -11.53807 -11.51323 -10.99974 -10.73187 -10.56149 -10.54638 -9.47492 -9.06915 -8.14149 -6.25668 0.71248 1.42475 1.45627 1.55058 1.64715 1.68896 1.84113 1.90364 1.94696 2.33025 2.48500 2.89831 3.12975 3.18320 3.46550 3.68136 3.85998 3.91006 3.96622 4.03429 4.08184 4.17205 4.20679 4.23472 4.37860 4.41649 4.55018 4.61311 4.72704 4.82987 4.86504 4.90308 4.94437 4.95968 5.02887 5.11203 5.11548 5.16531 5.17680 5.21075 5.27468 5.37740 5.41192 5.66000 5.67109 5.90183 6.15523 6.28381 6.59821 6.75532 6.86345 7.37702 7.53379 8.93464 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.002752 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.172696 B =10173.146617 C =10777.634417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.139 4.139 3 H 0.091 0.909 4 C -0.168 4.168 5 C -0.085 4.085 6 H 0.154 0.846 7 C 0.002 3.998 8 C -0.210 4.210 9 C -0.208 4.208 10 C -0.018 4.018 11 C -0.019 4.019 12 C -0.125 4.125 13 C 0.505 3.495 14 O -0.587 6.587 15 N -0.598 5.598 16 C 0.257 3.743 17 C -0.529 4.529 18 H 0.068 0.932 19 C 0.008 3.992 20 N -0.930 5.930 21 Si 0.955 3.045 22 H -0.260 1.260 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.118 3.882 26 C -0.044 4.044 27 C 0.247 3.753 28 N -0.488 5.488 29 O -0.190 6.190 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.122 0.878 34 H 0.084 0.916 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.001 0.999 42 H 0.028 0.972 43 H 0.263 0.737 44 H 0.113 0.887 45 H 0.089 0.911 46 H 0.116 0.884 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.036 -11.219 -3.794 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.157 4.157 3 H 0.110 0.890 4 C -0.205 4.205 5 C -0.103 4.103 6 H 0.171 0.829 7 C -0.048 4.048 8 C -0.229 4.229 9 C -0.227 4.227 10 C -0.068 4.068 11 C -0.056 4.056 12 C -0.164 4.164 13 C 0.294 3.706 14 O -0.467 6.467 15 N -0.329 5.329 16 C 0.136 3.864 17 C -0.568 4.568 18 H 0.086 0.914 19 C -0.190 4.190 20 N -0.571 5.571 21 Si 0.781 3.219 22 H -0.184 1.184 23 H -0.216 1.216 24 H -0.204 1.204 25 C -0.006 4.006 26 C -0.085 4.085 27 C -0.071 4.071 28 N -0.166 5.166 29 O -0.088 6.088 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.140 0.860 34 H 0.102 0.898 35 H 0.184 0.816 36 H 0.182 0.818 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.129 0.871 40 H 0.141 0.859 41 H 0.019 0.981 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.131 0.869 45 H 0.107 0.893 46 H 0.134 0.866 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.600 -10.395 -3.724 26.056 hybrid contribution 1.442 0.092 0.861 1.683 sum -22.158 -10.302 -2.863 24.603 Atomic orbital electron populations 1.21391 0.90494 1.03043 1.02744 1.22536 0.96633 0.93947 1.02585 0.89034 1.23239 1.02868 1.01976 0.92374 1.20784 0.91235 1.03824 0.94409 0.82882 1.21886 0.87472 1.03164 0.92285 1.21768 0.97667 1.07824 0.95633 1.21861 0.95965 1.06177 0.98692 1.22443 0.91446 1.05479 0.87414 1.19743 0.87255 0.94211 1.04427 1.21729 0.92957 0.95485 1.06252 1.21118 0.91225 0.81987 0.76237 1.90679 1.49208 1.56373 1.50490 1.48109 1.10586 1.05703 1.68457 1.18848 0.78696 0.93430 0.95455 1.21811 0.98483 1.42556 0.93912 0.91381 1.25747 0.95676 0.95647 1.01959 1.70052 1.03968 1.46637 1.36415 0.85543 0.78356 0.77576 0.80417 1.18360 1.21623 1.20375 1.21540 0.89531 0.94478 0.95082 1.19894 0.91349 0.96184 1.01074 1.29146 0.93133 0.92936 0.91848 1.81190 1.13142 1.12043 1.10230 1.83918 1.20345 1.66108 1.38418 0.91093 0.91539 0.91339 0.86002 0.89767 0.81561 0.81822 0.88151 0.90987 0.87095 0.85911 0.98099 0.95447 0.92797 0.86943 0.89288 0.86626 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.19 71.98 0.73 -0.41 16 2 C -0.14 -1.97 6.11 -10.79 -0.07 -2.04 16 3 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.17 -2.43 9.81 30.60 0.30 -2.13 16 5 C -0.08 -1.28 5.96 -11.54 -0.07 -1.35 16 6 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 7 C 0.00 0.03 6.80 24.83 0.17 0.20 16 8 C -0.21 -4.06 10.81 22.19 0.24 -3.82 16 9 C -0.21 -4.29 10.81 22.19 0.24 -4.05 16 10 C -0.02 -0.43 6.58 24.83 0.16 -0.27 16 11 C -0.02 -0.46 5.04 29.85 0.15 -0.31 16 12 C -0.12 -2.88 4.23 29.85 0.13 -2.75 16 13 C 0.50 17.59 7.67 87.66 0.67 18.26 16 14 O -0.59 -26.81 15.56 -3.04 -0.05 -26.86 16 15 N -0.60 -20.96 2.46 -826.17 -2.03 -22.99 16 16 C 0.26 12.23 5.20 85.64 0.45 12.67 16 17 C -0.53 -27.05 8.93 25.60 0.23 -26.83 16 18 H 0.07 3.31 7.42 -2.91 -0.02 3.29 16 19 C 0.01 0.45 5.46 84.65 0.46 0.91 16 20 N -0.93 -53.64 13.29 21.45 0.28 -53.35 16 21 Si 0.96 42.46 29.54 68.60 2.03 44.49 16 22 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 25 C 0.12 2.84 5.21 86.38 0.45 3.29 16 26 C -0.04 -0.98 6.03 28.79 0.17 -0.81 16 27 C 0.25 6.03 15.43 89.45 1.38 7.41 16 28 N -0.49 -14.40 18.53 20.00 0.37 -14.03 16 29 O -0.19 -4.77 10.36 -2.53 -0.03 -4.80 16 30 H 0.07 0.51 7.90 -2.39 -0.02 0.49 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.12 1.24 8.05 -2.39 -0.02 1.22 16 34 H 0.08 1.52 7.96 -2.39 -0.02 1.51 16 35 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 36 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.10 2.48 8.10 -2.39 -0.02 2.46 16 38 H 0.07 2.02 8.10 -2.39 -0.02 2.00 16 39 H 0.11 2.17 7.18 -2.39 -0.02 2.15 16 40 H 0.12 2.14 7.40 -2.39 -0.02 2.12 16 41 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 42 H 0.03 1.33 7.89 -2.39 -0.02 1.31 16 43 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 44 H 0.11 1.90 6.44 -2.39 -0.02 1.88 16 45 H 0.09 2.15 7.89 -2.39 -0.02 2.13 16 46 H 0.12 3.08 7.27 -2.39 -0.02 3.06 16 47 H 0.13 2.35 7.22 -2.39 -0.02 2.33 16 Total: -1.00 -71.85 404.56 7.35 -64.50 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.97 Total: 15.04 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 5.80 Total: -2.01 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -1.37 Total: -90.37 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.07 Total: -31.66 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -71.85 7.35 -64.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604470859.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.751 kcal (2) G-P(sol) polarization free energy of solvation -71.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds