Wall clock time and date at job start Tue Mar 31 2020 17:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 115.54793 * 2 1 4 4 C 1.53074 * 117.51399 * 214.28068 * 2 1 3 5 5 C 1.52996 * 59.98335 * 252.52102 * 4 2 1 6 6 H 1.08995 * 117.49530 * 252.49437 * 5 4 2 7 7 C 1.53006 * 117.49538 * 107.50343 * 5 4 2 8 8 H 1.08995 * 115.54923 * 16.96984 * 7 5 4 9 9 C 1.52993 * 117.49602 * 162.64375 * 7 5 4 10 10 C 1.52994 * 60.03336 * 107.47647 * 9 7 5 11 11 H 1.09006 * 117.49744 * 252.52306 * 10 9 7 12 12 C 1.53002 * 117.50198 * 107.50074 * 10 9 7 13 13 N 1.46491 * 109.47160 * 116.38902 * 12 10 9 14 14 C 1.34777 * 120.00010 * 179.97438 * 13 12 10 15 15 O 1.21585 * 120.00068 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00310 * 179.97438 * 14 13 12 17 17 C 1.39943 * 120.00136 * 174.74935 * 16 14 13 18 18 C 1.38958 * 120.03427 * 146.43776 * 17 16 14 19 19 C 1.38157 * 120.06579 * 180.02562 * 18 17 16 20 20 C 1.38166 * 120.13972 * 359.97379 * 19 18 17 21 21 C 1.38906 * 120.06768 * 359.97438 * 20 19 18 22 22 O 1.35760 * 120.03342 * 180.02562 * 21 20 19 23 23 C 1.34831 * 116.99895 * 5.91635 * 22 21 20 24 24 H 1.08004 * 119.99810 * 5.40243 * 23 22 21 25 25 C 1.38642 * 119.99987 * 185.40486 * 23 22 21 26 26 N 1.31563 * 120.00361 * 179.97438 * 25 23 22 27 27 Si 1.86804 * 120.00166 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47152 * 89.99935 * 27 25 23 29 29 H 1.48496 * 109.47183 * 209.99890 * 27 25 23 30 30 H 1.48503 * 109.46738 * 329.99965 * 27 25 23 31 31 C 1.38705 * 120.03263 * 326.16056 * 17 16 14 32 32 H 1.09002 * 109.47120 * 274.32220 * 1 2 3 33 33 H 1.09000 * 109.47341 * 34.32464 * 1 2 3 34 34 H 1.09006 * 109.46902 * 154.32667 * 1 2 3 35 35 H 1.09005 * 117.49219 * 145.03327 * 4 2 1 36 36 H 1.09002 * 117.51062 * 0.02562 * 4 2 1 37 37 H 1.09006 * 117.50082 * 214.97994 * 9 7 5 38 38 H 1.09005 * 117.50436 * 359.97150 * 9 7 5 39 39 H 1.09000 * 109.46688 * 236.39462 * 12 10 9 40 40 H 1.09006 * 109.46409 * 356.38990 * 12 10 9 41 41 H 0.97003 * 120.00084 * 0.02562 * 13 12 10 42 42 H 0.97003 * 119.99396 * 354.75045 * 16 14 13 43 43 H 1.07998 * 119.96885 * 0.02562 * 18 17 16 44 44 H 1.07998 * 119.93056 * 179.97438 * 19 18 17 45 45 H 1.07998 * 119.96618 * 179.97438 * 20 19 18 46 46 H 0.96997 * 120.00255 * 179.97438 * 26 25 23 47 47 H 1.07995 * 120.07394 * 359.97438 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2371 -1.1218 -0.7647 5 6 2.2364 -1.1207 0.7653 6 1 3.1713 -0.8747 1.2687 7 6 1.3588 -2.1558 1.4720 8 1 1.0279 -2.9912 0.8552 9 6 1.6486 -2.4383 2.9475 10 6 0.3989 -1.6494 2.5515 11 1 0.3931 -0.5791 2.7577 12 6 -0.9526 -2.3544 2.6827 13 7 -1.7716 -1.6588 3.6783 14 6 -3.0115 -2.1049 3.9616 15 8 -3.4500 -3.0850 3.3911 16 7 -3.7649 -1.4652 4.8779 17 6 -5.0901 -1.8601 5.0932 18 6 -5.6443 -1.7720 6.3645 19 6 -6.9523 -2.1622 6.5778 20 6 -7.7136 -2.6403 5.5286 21 6 -7.1657 -2.7297 4.2553 22 8 -7.9145 -3.1992 3.2248 23 6 -9.2160 -3.4457 3.4764 24 1 -9.6388 -3.1873 4.4361 25 6 -10.0114 -4.0311 2.5034 26 7 -11.2812 -4.2722 2.7490 27 14 -9.2798 -4.4788 0.8439 28 1 -8.7515 -5.8658 0.8938 29 1 -10.3305 -4.3867 -0.2014 30 1 -8.1757 -3.5399 0.5201 31 6 -5.8535 -2.3343 4.0367 32 1 -0.3633 0.0775 1.0248 33 1 -0.3634 0.8487 -0.5795 34 1 -0.3633 -0.9263 -0.4453 35 1 3.1724 -0.8759 -1.2678 36 1 1.6123 -1.8595 -1.2681 37 1 1.5080 -3.4596 3.3015 38 1 2.4648 -1.8871 3.4147 39 1 -1.4633 -2.3429 1.7198 40 1 -0.7952 -3.3859 2.9982 41 1 -1.4219 -0.8767 4.1331 42 1 -3.3885 -0.7311 5.3882 43 1 -5.0519 -1.3983 7.1865 44 1 -7.3807 -2.0932 7.5668 45 1 -8.7357 -2.9449 5.6987 46 1 -11.8377 -4.6814 2.0681 47 1 -5.4266 -2.3990 3.0468 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887241935.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:46 Heat of formation + Delta-G solvation = 0.586843 kcal Electronic energy + Delta-G solvation = -26994.101475 eV Core-core repulsion = 23143.555151 eV Total energy + Delta-G solvation = -3850.546324 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.73043 -40.62225 -40.01390 -38.45345 -37.08089 -35.56570 -35.02785 -34.43224 -31.30157 -30.35017 -29.53898 -27.74903 -27.17893 -24.44571 -24.02257 -22.97366 -22.29624 -22.09236 -21.83374 -20.18731 -19.88977 -19.58754 -19.06426 -17.50885 -16.97452 -16.73436 -16.67085 -16.48190 -16.13991 -15.82101 -15.63172 -15.59223 -15.09693 -14.85543 -14.67006 -14.36598 -14.25929 -14.16535 -13.93811 -13.56481 -13.28076 -13.13443 -12.93522 -12.73283 -12.49681 -12.36702 -12.32152 -12.12339 -12.06040 -11.70182 -11.54205 -11.43524 -11.37133 -11.08318 -10.86817 -10.63693 -10.33591 -10.10008 -9.35522 -8.87562 -8.51335 -6.22728 0.44551 0.66470 1.26635 1.31355 1.47870 1.51008 2.04408 2.26483 2.60283 2.76265 2.98548 3.01383 3.12834 3.33368 3.54526 3.77442 3.94508 3.97495 4.12270 4.16222 4.20184 4.36778 4.37443 4.41275 4.45656 4.58885 4.63020 4.65479 4.71890 4.72707 4.91112 4.93229 4.95310 4.97616 4.98883 5.17654 5.23045 5.28109 5.33652 5.35160 5.37580 5.43856 5.45366 5.48529 5.69369 5.79366 5.91377 5.98374 6.24328 6.83924 7.00075 7.48112 7.60896 8.60226 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013194 B = 0.002437 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.629089 B =11486.154150 C =13053.728489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.150 4.150 3 H 0.111 0.889 4 C -0.179 4.179 5 C -0.119 4.119 6 H 0.117 0.883 7 C -0.113 4.113 8 H 0.097 0.903 9 C -0.158 4.158 10 C -0.152 4.152 11 H 0.128 0.872 12 C 0.170 3.830 13 N -0.717 5.717 14 C 0.694 3.306 15 O -0.619 6.619 16 N -0.664 5.664 17 C 0.204 3.796 18 C -0.196 4.196 19 C -0.050 4.050 20 C -0.250 4.250 21 C 0.135 3.865 22 O -0.250 6.250 23 C -0.396 4.396 24 H 0.088 0.912 25 C 0.014 3.986 26 N -0.919 5.919 27 Si 0.962 3.038 28 H -0.270 1.270 29 H -0.260 1.260 30 H -0.272 1.272 31 C -0.204 4.204 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.417 0.583 42 H 0.429 0.571 43 H 0.166 0.834 44 H 0.157 0.843 45 H 0.114 0.886 46 H 0.285 0.715 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.279 11.576 2.291 33.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.168 4.168 3 H 0.129 0.871 4 C -0.216 4.216 5 C -0.137 4.137 6 H 0.135 0.865 7 C -0.132 4.132 8 H 0.115 0.885 9 C -0.195 4.195 10 C -0.170 4.170 11 H 0.145 0.855 12 C 0.046 3.954 13 N -0.374 5.374 14 C 0.394 3.606 15 O -0.499 6.499 16 N -0.314 5.314 17 C 0.108 3.892 18 C -0.216 4.216 19 C -0.069 4.069 20 C -0.270 4.270 21 C 0.085 3.915 22 O -0.158 6.158 23 C -0.472 4.472 24 H 0.106 0.894 25 C -0.185 4.185 26 N -0.560 5.560 27 Si 0.785 3.215 28 H -0.195 1.195 29 H -0.184 1.184 30 H -0.197 1.197 31 C -0.226 4.226 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.254 0.746 42 H 0.268 0.732 43 H 0.184 0.816 44 H 0.174 0.826 45 H 0.132 0.868 46 H 0.095 0.905 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 30.838 10.590 1.423 32.636 hybrid contribution -0.292 0.013 -0.507 0.585 sum 30.545 10.603 0.916 32.346 Atomic orbital electron populations 1.21403 0.93273 1.01310 1.02214 1.22410 0.95131 0.94636 1.04652 0.87072 1.23200 1.02874 1.01655 0.93858 1.21860 0.99983 0.98460 0.93410 0.86498 1.21785 1.00333 0.99702 0.91401 0.88451 1.23285 0.98676 1.01297 0.96215 1.22419 0.88957 1.00168 1.05446 0.85457 1.20719 0.89029 0.95113 0.90549 1.44824 1.13357 1.34221 1.45026 1.16203 0.81688 0.82445 0.80226 1.91005 1.73396 1.29548 1.55901 1.42240 1.09772 1.37815 1.41570 1.17030 0.82743 0.96892 0.92486 1.20889 0.96654 1.09450 0.94639 1.21016 0.93234 0.94231 0.98380 1.21341 1.02047 1.10494 0.93121 1.19366 0.90953 0.93315 0.87868 1.83549 1.21860 1.75510 1.34854 1.20753 0.81607 1.41421 1.03415 0.89443 1.25157 0.95081 0.95728 1.02490 1.69710 1.06012 1.43402 1.36854 0.85349 0.78395 0.79129 0.78610 1.19488 1.18416 1.19735 1.20073 0.91855 1.10778 0.99868 0.91578 0.92414 0.93717 0.87868 0.89448 0.88715 0.86925 0.93042 0.92593 0.74562 0.73173 0.81612 0.82554 0.86849 0.90543 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 8.98 71.98 0.65 -1.05 16 2 C -0.15 -1.67 6.39 -10.77 -0.07 -1.74 16 3 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 4 C -0.18 -2.01 9.90 30.62 0.30 -1.71 16 5 C -0.12 -1.23 5.87 -10.79 -0.06 -1.29 16 6 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 7 C -0.11 -1.33 4.98 -10.77 -0.05 -1.38 16 8 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 9 C -0.16 -1.54 9.89 30.59 0.30 -1.23 16 10 C -0.15 -1.70 3.87 -10.77 -0.04 -1.74 16 11 H 0.13 1.09 7.20 -2.38 -0.02 1.07 16 12 C 0.17 3.12 5.96 86.38 0.51 3.64 16 13 N -0.72 -12.93 5.56 -478.54 -2.66 -15.59 16 14 C 0.69 19.94 8.30 179.05 1.49 21.42 16 15 O -0.62 -25.59 14.06 -3.98 -0.06 -25.64 16 16 N -0.66 -16.32 5.35 -317.23 -1.70 -18.01 16 17 C 0.20 6.92 6.27 38.13 0.24 7.16 16 18 C -0.20 -5.57 9.96 22.42 0.22 -5.35 16 19 C -0.05 -1.66 10.03 22.23 0.22 -1.43 16 20 C -0.25 -11.25 9.13 22.41 0.20 -11.05 16 21 C 0.13 6.89 6.64 22.56 0.15 7.04 16 22 O -0.25 -14.83 8.58 -22.86 -0.20 -15.03 16 23 C -0.40 -24.42 9.90 67.92 0.67 -23.74 16 24 H 0.09 5.52 5.53 -2.91 -0.02 5.50 16 25 C 0.01 0.85 5.49 84.83 0.47 1.32 16 26 N -0.92 -56.34 13.96 21.61 0.30 -56.04 16 27 Si 0.96 48.74 28.62 68.60 1.96 50.70 16 28 H -0.27 -13.33 7.11 99.48 0.71 -12.63 16 29 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 30 H -0.27 -14.23 7.11 99.48 0.71 -13.53 16 31 C -0.20 -9.25 8.59 22.51 0.19 -9.06 16 32 H 0.07 0.86 5.96 -2.39 -0.01 0.84 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.04 0.71 7.90 -2.38 -0.02 0.69 16 35 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.09 1.12 8.05 -2.39 -0.02 1.10 16 37 H 0.09 1.02 8.03 -2.38 -0.02 1.00 16 38 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.19 7.88 -2.38 -0.02 1.17 16 41 H 0.42 3.99 8.42 -92.71 -0.78 3.21 16 42 H 0.43 5.91 8.84 -92.71 -0.82 5.09 16 43 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 44 H 0.16 3.90 8.06 -2.91 -0.02 3.87 16 45 H 0.11 5.51 5.71 -2.91 -0.02 5.49 16 46 H 0.28 16.01 8.31 -92.71 -0.77 15.24 16 47 H 0.11 5.28 6.45 -2.91 -0.02 5.26 16 Total: -1.00 -80.32 388.99 2.46 -77.85 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -0.59 Total: 21.96 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 5.40 Total: -20.20 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -4.06 Total: -89.64 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -0.25 Total: -40.67 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 1.96 Total: 50.70 kcal Total: -80.32 2.46 -77.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887241935.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.441 kcal (2) G-P(sol) polarization free energy of solvation -80.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds