Wall clock time and date at job start Tue Mar 31 2020 16:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.65917 * 2 1 4 4 C 1.54701 * 110.73975 * 236.80342 * 2 1 3 5 5 C 1.51676 * 101.91216 * 216.03795 * 4 2 1 6 6 C 1.37304 * 132.06838 * 195.77218 * 5 4 2 7 7 C 1.39807 * 119.86055 * 179.62159 * 6 5 4 8 8 C 1.47605 * 120.26931 * 179.97438 * 7 6 5 9 9 O 1.21580 * 120.00304 * 152.00554 * 8 7 6 10 10 N 1.34776 * 119.99706 * 332.00127 * 8 7 6 11 11 C 1.47426 * 125.65080 * 3.46502 * 10 8 7 12 12 C 1.54910 * 104.83222 * 204.09307 * 11 10 8 13 13 C 1.55158 * 101.58151 * 322.98962 * 12 11 10 14 14 H 1.09003 * 110.71823 * 277.13728 * 13 12 11 15 15 N 1.46496 * 110.71969 * 153.86904 * 13 12 11 16 16 C 1.46499 * 119.99872 * 299.99992 * 15 13 12 17 17 C 1.36935 * 119.99918 * 119.99923 * 15 13 12 18 18 H 1.07992 * 120.00303 * 18.53709 * 17 15 13 19 19 C 1.38816 * 119.99738 * 198.53325 * 17 15 13 20 20 N 1.31617 * 120.00178 * 17.61266 * 19 17 15 21 21 Si 1.86805 * 119.99878 * 197.61379 * 19 17 15 22 22 H 1.48497 * 109.46849 * 94.98589 * 21 19 17 23 23 H 1.48503 * 109.46848 * 214.98516 * 21 19 17 24 24 H 1.48499 * 109.46942 * 334.98199 * 21 19 17 25 25 C 1.47021 * 125.64772 * 183.16015 * 10 8 7 26 26 C 1.39750 * 119.46206 * 359.97438 * 7 6 5 27 27 C 1.37697 * 120.23464 * 0.16902 * 26 7 6 28 28 C 1.39273 * 106.94171 * 15.74553 * 5 4 2 29 29 O 1.35994 * 111.20231 * 0.60025 * 28 5 4 30 30 H 1.09002 * 109.46804 * 183.19618 * 1 2 3 31 31 H 1.09001 * 109.46779 * 303.19440 * 1 2 3 32 32 H 1.09000 * 109.47122 * 63.19650 * 1 2 3 33 33 H 1.09000 * 110.94917 * 334.20122 * 4 2 1 34 34 H 1.09002 * 110.94886 * 97.86874 * 4 2 1 35 35 H 1.07999 * 120.06960 * 359.60150 * 6 5 4 36 36 H 1.09006 * 110.36638 * 322.93371 * 11 10 8 37 37 H 1.09002 * 110.36751 * 85.25229 * 11 10 8 38 38 H 1.08996 * 111.00727 * 81.06619 * 12 11 10 39 39 H 1.08999 * 110.99877 * 204.87769 * 12 11 10 40 40 H 1.09001 * 109.47508 * 94.57637 * 16 15 13 41 41 H 1.08997 * 109.47444 * 214.57985 * 16 15 13 42 42 H 1.09005 * 109.47321 * 334.57873 * 16 15 13 43 43 H 0.96999 * 120.00519 * 179.97438 * 20 19 17 44 44 H 1.09008 * 109.88021 * 298.39353 * 25 10 8 45 45 H 1.08993 * 109.88244 * 59.55469 * 25 10 8 46 46 H 1.08000 * 119.89522 * 180.16871 * 26 7 6 47 47 H 1.07999 * 119.84975 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0779 -0.7921 -1.2106 5 6 3.3111 -1.4504 -0.6220 6 6 4.3983 -2.0541 -1.2041 7 6 5.4147 -2.5808 -0.4016 8 6 6.5871 -3.2321 -1.0178 9 8 7.6566 -3.2319 -0.4395 10 7 6.4721 -3.8272 -2.2216 11 6 5.2606 -3.8399 -3.0616 12 6 5.4134 -5.0933 -3.9590 13 6 6.9393 -5.0908 -4.2404 14 1 7.1788 -4.4157 -5.0620 15 7 7.4158 -6.4464 -4.5258 16 6 7.2626 -7.5031 -3.5228 17 6 8.0044 -6.7257 -5.7303 18 1 8.3893 -5.9235 -6.3422 19 6 8.1065 -8.0402 -6.1646 20 7 7.3555 -8.9736 -5.6195 21 14 9.3097 -8.4844 -7.5227 22 1 10.5825 -8.9570 -6.9212 23 1 8.7301 -9.5617 -8.3647 24 1 9.5728 -7.2878 -8.3617 25 6 7.5359 -4.5660 -2.9173 26 6 5.3116 -2.4855 0.9889 27 6 4.2159 -1.8808 1.5631 28 6 3.1980 -1.3587 0.7631 29 8 2.0428 -0.7375 1.1222 30 1 -0.3633 -1.0261 0.0573 31 1 -0.3633 0.5626 0.8600 32 1 -0.3633 0.4634 -0.9173 33 1 1.3588 -1.5401 -1.5446 34 1 2.3462 -0.1208 -2.0264 35 1 4.4679 -2.1222 -2.2797 36 1 4.3690 -3.9245 -2.4403 37 1 5.2136 -2.9388 -3.6732 38 1 5.1161 -5.9953 -3.4243 39 1 4.8450 -4.9840 -4.8827 40 1 6.3447 -8.0580 -3.7168 41 1 8.1148 -8.1806 -3.5756 42 1 7.2143 -7.0569 -2.5294 43 1 7.4264 -9.8921 -5.9232 44 1 8.3744 -3.9011 -3.1246 45 1 7.8673 -5.4039 -2.3041 46 1 6.0940 -2.8876 1.6154 47 1 4.1428 -1.8102 2.6383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972558607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:56 Heat of formation + Delta-G solvation = 1.545702 kcal Electronic energy + Delta-G solvation = -28142.596694 eV Core-core repulsion = 24292.091949 eV Total energy + Delta-G solvation = -3850.504745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.52339 -39.97780 -37.81033 -36.96817 -34.88863 -33.56735 -31.87152 -31.44269 -30.55896 -29.78554 -27.74976 -26.99209 -26.08356 -24.55385 -22.97168 -22.32766 -21.99763 -21.91137 -19.55409 -19.18489 -17.89810 -17.34095 -17.07988 -16.80478 -16.03901 -15.92942 -15.11008 -14.73380 -14.65391 -14.33627 -13.91566 -13.78971 -13.53460 -13.43301 -13.30559 -13.23352 -12.88203 -12.83048 -12.59412 -12.39657 -12.35682 -12.25454 -11.74511 -11.71687 -11.42984 -11.12110 -11.03072 -10.91992 -10.70712 -10.60300 -10.46425 -10.26305 -9.91962 -9.86519 -9.74202 -9.16163 -8.58589 -8.49776 -8.26801 -6.88944 -5.79200 -3.21095 0.75250 1.06576 2.74180 2.89772 3.14924 3.36768 3.44030 3.44742 3.62004 4.02913 4.10173 4.44876 4.46380 4.52964 4.60099 4.73821 4.85932 4.96444 5.04538 5.11780 5.19824 5.24449 5.25169 5.28988 5.41670 5.45025 5.48561 5.52667 5.62423 5.71692 5.73006 5.85735 5.91493 5.97729 6.06224 6.15481 6.26210 6.28433 6.36336 6.53908 6.61842 6.78555 6.84275 6.86149 7.33981 7.65164 7.73726 7.76861 8.29178 8.33911 9.15872 9.79633 10.26686 11.26471 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.023355 B = 0.002461 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.614286 B =11372.586536 C =12046.512834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 H 0.088 0.912 4 C -0.105 4.105 5 C -0.186 4.186 6 C -0.047 4.047 7 C -0.152 4.152 8 C 0.572 3.428 9 O -0.544 6.544 10 N -0.605 5.605 11 C 0.092 3.908 12 C -0.153 4.153 13 C 0.173 3.827 14 H 0.079 0.921 15 N -0.587 5.587 16 C 0.159 3.841 17 C -0.260 4.260 18 H 0.072 0.928 19 C 0.003 3.997 20 N -0.904 5.904 21 Si 0.905 3.095 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.086 3.914 26 C -0.027 4.027 27 C -0.147 4.147 28 C 0.127 3.873 29 O -0.301 6.301 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.143 0.857 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.030 0.970 41 H 0.046 0.954 42 H 0.003 0.997 43 H 0.253 0.747 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.143 0.857 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.007 17.821 10.365 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 H 0.106 0.894 4 C -0.142 4.142 5 C -0.186 4.186 6 C -0.065 4.065 7 C -0.156 4.156 8 C 0.362 3.638 9 O -0.423 6.423 10 N -0.338 5.338 11 C -0.031 4.031 12 C -0.193 4.193 13 C 0.063 3.937 14 H 0.097 0.903 15 N -0.307 5.307 16 C 0.014 3.986 17 C -0.389 4.389 18 H 0.090 0.910 19 C -0.196 4.196 20 N -0.548 5.548 21 Si 0.735 3.265 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.204 1.204 25 C -0.038 4.038 26 C -0.046 4.046 27 C -0.166 4.166 28 C 0.081 3.919 29 O -0.215 6.215 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.161 0.839 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.021 0.979 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.160 0.840 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.540 17.630 10.875 24.747 hybrid contribution 0.503 -0.349 -0.877 1.070 sum -13.037 17.281 9.998 23.844 Atomic orbital electron populations 1.21894 0.91910 1.03681 1.03229 1.23423 0.95862 0.95450 0.83265 0.89428 1.21879 0.94497 0.99448 0.98377 1.20677 0.98022 1.06107 0.93833 1.20965 0.90652 0.93927 1.00941 1.19757 0.96391 1.05226 0.94180 1.17751 0.87769 0.78454 0.79875 1.90777 1.28582 1.60549 1.62366 1.48368 1.14741 1.52949 1.17714 1.22707 0.87886 0.99354 0.93166 1.23439 1.00664 0.96197 0.99009 1.21279 0.90461 0.88731 0.93246 0.90301 1.43906 1.68374 1.03539 1.14876 1.20814 1.01029 0.89734 0.86987 1.19248 1.30884 0.92426 0.96335 0.90994 1.24918 0.99181 0.96693 0.98794 1.70115 1.38644 1.01329 1.44717 0.86231 0.81076 0.77931 0.81270 1.21484 1.21835 1.20413 1.22784 0.89816 0.95615 0.95542 1.20993 0.96088 0.94064 0.93451 1.20241 0.92248 1.04099 0.99983 1.19836 0.86374 0.92882 0.92841 1.86804 1.34453 1.62209 1.37996 0.91253 0.91294 0.90113 0.88780 0.88836 0.83933 0.90669 0.91394 0.90511 0.90276 0.95158 0.93547 0.97853 0.93680 0.91845 0.90653 0.83969 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.59 37.16 0.36 -0.39 16 2 C 0.08 0.54 4.25 -25.83 -0.11 0.43 16 3 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -0.76 6.64 -26.51 -0.18 -0.94 16 5 C -0.19 -1.93 6.26 -104.10 -0.65 -2.58 16 6 C -0.05 -0.53 7.91 -39.33 -0.31 -0.84 16 7 C -0.15 -2.08 5.69 -104.92 -0.60 -2.67 16 8 C 0.57 9.60 7.63 -12.44 -0.09 9.51 16 9 O -0.54 -10.92 17.00 5.30 0.09 -10.83 16 10 N -0.60 -9.79 3.33 -171.71 -0.57 -10.36 16 11 C 0.09 1.22 5.03 -2.53 -0.01 1.20 16 12 C -0.15 -2.49 6.66 -24.58 -0.16 -2.65 16 13 C 0.17 3.34 3.43 -66.09 -0.23 3.11 16 14 H 0.08 1.48 7.91 -51.93 -0.41 1.07 16 15 N -0.59 -14.12 2.94 -171.39 -0.50 -14.62 16 16 C 0.16 3.84 7.77 59.85 0.46 4.30 16 17 C -0.26 -6.89 9.65 -15.06 -0.15 -7.04 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C 0.00 0.07 5.01 -17.43 -0.09 -0.01 16 20 N -0.90 -25.78 10.72 55.49 0.60 -25.18 16 21 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.09 1.59 6.41 -3.06 -0.02 1.57 16 26 C -0.03 -0.33 9.58 -39.21 -0.38 -0.71 16 27 C -0.15 -1.61 10.06 -39.27 -0.40 -2.00 16 28 C 0.13 1.41 7.05 -38.69 -0.27 1.14 16 29 O -0.30 -3.12 10.80 -19.72 -0.21 -3.34 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 0.61 7.93 -51.93 -0.41 0.20 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.14 1.43 4.66 -52.49 -0.24 1.19 16 36 H 0.08 0.89 6.22 -51.93 -0.32 0.57 16 37 H 0.07 0.75 7.26 -51.93 -0.38 0.37 16 38 H 0.08 1.39 7.34 -51.93 -0.38 1.01 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.03 0.78 7.47 -51.93 -0.39 0.40 16 41 H 0.05 1.22 7.12 -51.93 -0.37 0.85 16 42 H 0.00 0.07 6.17 -51.93 -0.32 -0.25 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 45 H 0.08 1.55 6.02 -51.93 -0.31 1.23 16 46 H 0.14 1.68 7.89 -52.49 -0.41 1.27 16 47 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 371.50 15.07 5.60 5.60 Total: -1.00 -32.02 371.50 -9.73 -41.75 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.88 Total: -0.89 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -2.82 Total: 1.43 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.48 Total: -50.17 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.12 Total: -14.17 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.02 -9.73 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972558607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.295 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds