Wall clock time and date at job start Tue Mar 31 2020 16:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50697 * 120.00010 * 2 1 4 4 O 1.42904 * 109.47417 * 135.00437 * 3 2 1 5 5 C 1.35709 * 117.00073 * 180.02562 * 4 3 2 6 6 C 1.38995 * 119.90685 * 179.97438 * 5 4 3 7 7 C 1.37709 * 120.08145 * 180.02562 * 6 5 4 8 8 C 1.39728 * 119.91490 * 359.97438 * 7 6 5 9 9 C 1.47600 * 120.08727 * 180.02562 * 8 7 6 10 10 O 1.21588 * 120.00146 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99996 * 180.02562 * 9 8 7 12 12 C 1.46493 * 119.99864 * 179.72547 * 11 9 8 13 13 C 1.53001 * 109.47084 * 180.02562 * 12 11 9 14 14 H 1.08992 * 110.64639 * 56.68321 * 13 12 11 15 15 C 1.55154 * 110.72367 * 180.02562 * 13 12 11 16 16 C 1.54903 * 101.58677 * 153.86021 * 15 13 12 17 17 N 1.47424 * 104.83178 * 322.99109 * 16 15 13 18 18 C 1.36931 * 125.64817 * 204.16252 * 17 16 15 19 19 H 1.08008 * 120.00050 * 179.97438 * 18 17 16 20 20 C 1.38815 * 120.00076 * 359.95589 * 18 17 16 21 21 N 1.31618 * 120.00032 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00041 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47556 * 90.00020 * 22 20 18 24 24 H 1.48504 * 109.46879 * 210.00103 * 22 20 18 25 25 H 1.48506 * 109.47209 * 329.99708 * 22 20 18 26 26 C 1.47022 * 108.70417 * 24.12832 * 17 16 15 27 27 C 1.39730 * 119.82225 * 0.27599 * 8 7 6 28 28 C 1.37702 * 119.91232 * 359.42257 * 27 8 7 29 29 H 1.08003 * 119.99911 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.00216 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.00092 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47544 * 15.00137 * 3 2 1 33 33 H 1.09003 * 109.46882 * 254.99941 * 3 2 1 34 34 H 1.07995 * 119.96145 * 359.97438 * 6 5 4 35 35 H 1.08007 * 120.03795 * 180.02562 * 7 6 5 36 36 H 0.97000 * 119.99339 * 359.97438 * 11 9 8 37 37 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 38 38 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 39 39 H 1.09001 * 111.00349 * 271.93985 * 15 13 12 40 40 H 1.09003 * 111.00611 * 35.78128 * 15 13 12 41 41 H 1.08997 * 110.37293 * 204.14993 * 16 15 13 42 42 H 1.09004 * 110.36378 * 81.82241 * 16 15 13 43 43 H 0.96994 * 119.99994 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.87895 * 239.52637 * 26 17 16 45 45 H 1.08991 * 110.01336 * 118.43195 * 26 17 16 46 46 H 1.08007 * 120.04342 * 179.72466 * 27 8 7 47 47 H 1.07996 * 119.95750 * 180.27301 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9080 2.3438 1.0787 6 6 4.9593 2.3479 1.9878 7 6 5.7540 3.4648 2.1191 8 6 5.5026 4.5948 1.3365 9 6 6.3524 5.7938 1.4736 10 8 7.2722 5.7994 2.2687 11 7 6.1080 6.8830 0.7182 12 6 6.9476 8.0752 0.8587 13 6 6.4602 9.1587 -0.1054 14 1 5.4092 9.3864 0.0720 15 6 7.3313 10.4366 0.0191 16 6 7.1641 11.0652 -1.3868 17 7 7.1290 9.9176 -2.3116 18 6 7.4559 9.9536 -3.6408 19 1 7.3976 9.0540 -4.2358 20 6 7.8617 11.1462 -4.2237 21 7 7.9318 12.2426 -3.4989 22 14 8.3069 11.1954 -6.0373 23 1 7.0944 11.5055 -6.8365 24 1 9.3327 12.2445 -6.2668 25 1 8.8478 9.8755 -6.4502 26 6 6.6857 8.7280 -1.5701 27 6 4.4415 4.5884 0.4275 28 6 3.6552 3.4654 0.2976 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3855 2.1161 0.2660 33 1 2.4754 1.4867 -0.9927 34 1 5.1528 1.4743 2.5926 35 1 6.5711 3.4671 2.8254 36 1 5.3739 6.8786 0.0842 37 1 6.8850 8.4452 1.8821 38 1 7.9819 7.8207 0.6269 39 1 6.9437 11.0999 0.7923 40 1 8.3735 10.1818 0.2117 41 1 8.0110 11.7117 -1.6165 42 1 6.2312 11.6262 -1.4429 43 1 8.2150 13.0760 -3.9064 44 1 7.4536 7.9556 -1.6153 45 1 5.7549 8.3502 -1.9929 46 1 4.2412 5.4614 -0.1761 47 1 2.8376 3.4581 -0.4079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028636946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:39 Heat of formation + Delta-G solvation = -1.679441 kcal Electronic energy + Delta-G solvation = -26778.057332 eV Core-core repulsion = 22927.412734 eV Total energy + Delta-G solvation = -3850.644598 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73139 -39.65199 -37.87453 -37.26514 -34.71269 -34.57620 -32.60896 -31.42765 -30.68461 -29.63509 -28.21047 -27.14303 -25.57459 -24.02142 -23.31396 -22.56195 -20.73367 -20.45665 -19.96739 -19.67832 -18.72752 -17.67969 -16.91998 -16.77180 -16.39681 -15.80516 -15.43090 -15.18316 -14.89132 -14.73756 -14.49782 -14.20676 -13.83802 -13.69774 -13.57132 -13.26784 -13.07571 -12.69314 -12.59912 -12.51727 -11.78943 -11.72856 -11.70271 -11.54562 -11.46833 -11.18254 -10.96257 -10.81913 -10.45385 -10.15654 -10.07102 -10.03226 -9.94151 -9.76404 -9.51668 -9.40428 -9.00432 -8.66244 -8.53693 -6.84753 -5.66627 -3.08317 0.67130 1.01200 1.50600 2.76946 2.85473 3.22708 3.38840 3.43873 3.45995 3.66950 4.21850 4.38955 4.43837 4.47434 4.54584 4.67453 4.71631 4.84839 4.95261 5.07595 5.11690 5.25864 5.26050 5.32384 5.39871 5.51536 5.62176 5.68849 5.79377 5.88018 5.91175 5.96479 6.02935 6.05095 6.08711 6.15588 6.32274 6.33910 6.46102 6.53594 6.58357 6.71534 6.89670 6.94732 7.50269 7.55428 7.61448 7.84680 8.24817 8.35404 9.20947 9.81897 10.46731 11.37320 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013491 B = 0.002141 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.982188 B =13076.984889 C =14585.294677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.158 4.158 3 C 0.084 3.916 4 O -0.309 6.309 5 C 0.152 3.848 6 C -0.161 4.161 7 C -0.020 4.020 8 C -0.170 4.170 9 C 0.559 3.441 10 O -0.544 6.544 11 N -0.721 5.721 12 C 0.133 3.867 13 C -0.115 4.115 14 H 0.076 0.924 15 C -0.135 4.135 16 C 0.152 3.848 17 N -0.604 5.604 18 C -0.223 4.223 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.922 5.922 22 Si 0.915 3.085 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.141 3.859 27 C -0.042 4.042 28 C -0.217 4.217 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.399 0.601 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.012 0.988 43 H 0.252 0.748 44 H 0.025 0.975 45 H 0.017 0.983 46 H 0.132 0.868 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.356 -20.818 10.368 26.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C 0.009 3.991 4 O -0.222 6.222 5 C 0.106 3.894 6 C -0.179 4.179 7 C -0.039 4.039 8 C -0.174 4.174 9 C 0.346 3.654 10 O -0.423 6.423 11 N -0.372 5.372 12 C 0.009 3.991 13 C -0.135 4.135 14 H 0.094 0.906 15 C -0.174 4.174 16 C 0.027 3.973 17 N -0.330 5.330 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.571 5.571 22 Si 0.745 3.255 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.015 3.985 27 C -0.061 4.061 28 C -0.236 4.236 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.155 0.845 35 H 0.162 0.838 36 H 0.235 0.765 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.030 0.970 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.035 0.965 46 H 0.149 0.851 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.604 -20.819 10.851 26.647 hybrid contribution -0.428 0.180 -1.556 1.623 sum -13.032 -20.639 9.296 26.119 Atomic orbital electron populations 1.23917 0.95417 1.02728 0.98549 1.22652 0.95669 0.97713 1.01559 1.21910 0.87782 0.97092 0.92292 1.86055 1.42014 1.35664 1.58458 1.19254 0.90486 0.85652 0.93983 1.20405 0.96032 1.00216 1.01286 1.21096 0.96927 0.90145 0.95685 1.19911 0.99389 0.95973 1.02091 1.18133 0.83900 0.82752 0.80596 1.90769 1.31436 1.83008 1.37101 1.45997 1.34973 1.14468 1.41752 1.21479 0.94658 0.83502 0.99418 1.22455 1.00129 0.95500 0.95379 0.90592 1.23006 0.98643 0.95124 1.00647 1.21937 1.01693 0.90212 0.83473 1.44497 1.78119 1.03994 1.06401 1.19071 1.37355 0.95059 0.83630 0.90557 1.24797 1.02008 0.95532 0.98412 1.69793 1.53945 0.99382 1.33936 0.86069 0.77815 0.77179 0.84411 1.21657 1.21625 1.20708 1.21322 0.96489 0.91308 0.89382 1.21148 0.92373 0.97531 0.95057 1.21173 1.04211 0.94106 1.04113 0.87335 0.88126 0.86157 0.91127 0.90610 0.84479 0.83835 0.76526 0.91520 0.91072 0.92089 0.91779 0.87510 0.97007 0.93718 0.95761 0.96539 0.85066 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 14.31 29.02 0.42 -0.33 16 2 C -0.16 -0.88 9.89 -36.03 -0.36 -1.24 16 3 C 0.08 0.53 5.15 36.00 0.19 0.72 16 4 O -0.31 -2.78 10.11 -18.83 -0.19 -2.97 16 5 C 0.15 1.45 6.70 -39.02 -0.26 1.19 16 6 C -0.16 -1.54 9.97 -39.49 -0.39 -1.94 16 7 C -0.02 -0.21 9.58 -39.22 -0.38 -0.59 16 8 C -0.17 -2.01 5.87 -104.96 -0.62 -2.63 16 9 C 0.56 8.02 7.76 -12.44 -0.10 7.93 16 10 O -0.54 -9.62 16.34 5.29 0.09 -9.53 16 11 N -0.72 -9.56 5.35 -61.32 -0.33 -9.89 16 12 C 0.13 1.97 4.99 -4.04 -0.02 1.95 16 13 C -0.12 -1.90 3.02 -88.78 -0.27 -2.17 16 14 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 15 C -0.13 -2.49 6.53 -24.59 -0.16 -2.65 16 16 C 0.15 3.64 5.89 -2.53 -0.01 3.62 16 17 N -0.60 -15.34 3.39 -170.07 -0.58 -15.91 16 18 C -0.22 -6.20 10.27 -15.06 -0.15 -6.35 16 19 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 20 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 21 N -0.92 -26.79 10.09 55.49 0.56 -26.23 16 22 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.14 2.84 6.53 -3.06 -0.02 2.82 16 27 C -0.04 -0.41 9.53 -39.22 -0.37 -0.78 16 28 C -0.22 -1.91 9.01 -39.50 -0.36 -2.26 16 29 H 0.11 0.35 8.06 -52.48 -0.42 -0.07 16 30 H 0.10 0.37 7.90 -52.49 -0.41 -0.04 16 31 H 0.12 0.64 8.06 -52.48 -0.42 0.21 16 32 H 0.07 0.38 7.37 -51.93 -0.38 -0.01 16 33 H 0.08 0.42 7.65 -51.93 -0.40 0.02 16 34 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.14 1.52 7.64 -52.48 -0.40 1.12 16 36 H 0.40 4.46 6.35 -40.82 -0.26 4.20 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 41 H 0.11 2.90 5.87 -51.93 -0.31 2.59 16 42 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.02 0.50 7.77 -51.93 -0.40 0.10 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.13 1.03 6.40 -52.48 -0.34 0.70 16 47 H 0.13 0.86 6.28 -52.49 -0.33 0.53 16 LS Contribution 387.01 15.07 5.83 5.83 Total: -1.00 -33.07 387.01 -9.60 -42.67 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.99 Total: 2.17 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.96 Total: -3.14 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.35 Total: -52.03 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.10 Total: -12.50 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.07 -9.60 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028636946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.991 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds