Wall clock time and date at job start Tue Mar 31 2020 16:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.80886 * 2 1 4 4 C 1.54706 * 110.75550 * 236.66969 * 2 1 3 5 5 C 1.51679 * 101.88022 * 266.95092 * 4 2 1 6 6 C 1.37700 * 132.12519 * 164.28347 * 5 4 2 7 7 C 1.38597 * 120.32193 * 180.57124 * 6 5 4 8 8 C 1.37833 * 119.96735 * 359.64975 * 7 6 5 9 9 C 1.39480 * 120.18875 * 0.40688 * 8 7 6 10 10 C 1.47544 * 120.05003 * 179.83554 * 9 8 7 11 11 O 1.21595 * 119.99647 * 179.72523 * 10 9 8 12 12 N 1.34766 * 120.00081 * 359.72803 * 10 9 8 13 13 C 1.46502 * 120.00007 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47279 * 180.02562 * 13 12 10 15 15 H 1.09001 * 110.64602 * 51.85624 * 14 13 12 16 16 C 1.55162 * 110.72133 * 174.99826 * 14 13 12 17 17 C 1.54907 * 101.58141 * 154.04282 * 16 14 13 18 18 N 1.47424 * 104.83241 * 322.98988 * 17 16 14 19 19 C 1.36943 * 125.64955 * 204.09232 * 18 17 16 20 20 H 1.08002 * 119.99788 * 180.02562 * 19 18 17 21 21 C 1.38811 * 119.99622 * 0.30258 * 19 18 17 22 22 N 1.31614 * 120.00467 * 359.72375 * 21 19 18 23 23 Si 1.86801 * 119.99700 * 179.72266 * 21 19 18 24 24 H 1.48501 * 109.46896 * 89.99850 * 23 21 19 25 25 H 1.48499 * 109.47039 * 210.00011 * 23 21 19 26 26 H 1.48501 * 109.47275 * 329.99811 * 23 21 19 27 27 C 1.47024 * 108.70428 * 24.35838 * 18 17 16 28 28 C 1.38830 * 106.99704 * 344.50429 * 5 4 2 29 29 O 1.35864 * 111.32285 * 359.11471 * 28 5 4 30 30 H 1.09000 * 109.47387 * 298.13159 * 1 2 3 31 31 H 1.08997 * 109.46828 * 58.13637 * 1 2 3 32 32 H 1.09009 * 109.46822 * 178.13179 * 1 2 3 33 33 H 1.09003 * 110.94989 * 25.09758 * 4 2 1 34 34 H 1.09006 * 110.94749 * 148.76956 * 4 2 1 35 35 H 1.08007 * 119.83936 * 0.54929 * 6 5 4 36 36 H 1.08001 * 120.01925 * 179.97438 * 7 6 5 37 37 H 1.08005 * 119.90130 * 180.14815 * 8 7 6 38 38 H 0.97000 * 120.00422 * 359.97438 * 12 10 9 39 39 H 1.09003 * 109.47612 * 59.99687 * 13 12 10 40 40 H 1.09004 * 109.46985 * 299.99892 * 13 12 10 41 41 H 1.08996 * 111.00324 * 35.96570 * 16 14 13 42 42 H 1.09001 * 111.00247 * 272.11281 * 16 14 13 43 43 H 1.09001 * 110.36805 * 204.15155 * 17 16 14 44 44 H 1.08999 * 110.36920 * 81.82885 * 17 16 14 45 45 H 0.96995 * 120.00147 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.88094 * 118.13011 * 27 18 17 47 47 H 1.09003 * 109.88256 * 239.30018 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0783 -0.7949 -1.2087 5 6 2.2628 -2.1784 -0.6149 6 6 2.4476 -3.4144 -1.1929 7 6 2.5807 -4.5442 -0.4012 8 6 2.5353 -4.4320 0.9718 9 6 2.3473 -3.1851 1.5678 10 6 2.2956 -3.0690 3.0378 11 8 2.1367 -1.9808 3.5565 12 7 2.4247 -4.1691 3.8056 13 6 2.3728 -4.0539 5.2651 14 6 2.5443 -5.4387 5.8924 15 1 3.4308 -5.9334 5.4954 16 6 2.6196 -5.3355 7.4388 17 6 2.1132 -6.7348 7.8689 18 7 1.0527 -7.0666 6.9001 19 6 0.0202 -7.9402 7.1150 20 1 -0.7089 -8.1161 6.3379 21 6 -0.0924 -8.5952 8.3337 22 7 0.7961 -8.3808 9.2807 23 14 -1.5052 -9.7809 8.6296 24 1 -1.0995 -11.1477 8.2143 25 1 -1.8538 -9.7851 10.0731 26 1 -2.6854 -9.3525 7.8366 27 6 1.2907 -6.3092 5.6627 28 6 2.2127 -2.0375 0.7654 29 8 2.0394 -0.7384 1.1234 30 1 -0.3634 0.4845 0.9062 31 1 -0.3633 0.5425 -0.8728 32 1 -0.3633 -1.0272 -0.0335 33 1 1.3543 -0.8139 -2.0234 34 1 3.0304 -0.3846 -1.5455 35 1 2.4888 -3.5040 -2.2684 36 1 2.7251 -5.5114 -0.8597 37 1 2.6416 -5.3128 1.5878 38 1 2.5511 -5.0372 3.3918 39 1 1.4109 -3.6364 5.5628 40 1 3.1744 -3.3989 5.6066 41 1 1.9611 -4.5504 7.8104 42 1 3.6452 -5.1724 7.7700 43 1 1.7057 -6.6968 8.8792 44 1 2.9208 -7.4646 7.8120 45 1 0.7175 -8.8388 10.1321 46 1 1.4611 -6.9967 4.8342 47 1 0.4333 -5.6714 5.4477 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028699852.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:00 Heat of formation + Delta-G solvation = -16.603684 kcal Electronic energy + Delta-G solvation = -27784.657351 eV Core-core repulsion = 23933.365590 eV Total energy + Delta-G solvation = -3851.291761 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.62161 -39.53198 -37.76950 -37.38312 -34.59609 -33.45375 -32.53484 -31.27112 -30.61986 -29.64441 -28.16873 -27.13035 -25.64459 -24.23158 -22.99349 -22.35832 -21.84709 -20.60533 -19.90365 -19.59520 -17.78593 -17.31294 -16.83962 -16.66407 -16.28445 -15.75147 -15.29321 -15.15544 -14.73196 -14.46399 -14.18830 -13.98567 -13.79007 -13.64518 -13.20025 -13.07004 -12.73964 -12.54509 -12.48207 -12.38921 -12.10767 -11.80016 -11.69536 -11.66513 -11.46982 -11.34230 -11.16049 -10.93776 -10.80003 -10.37994 -10.11917 -9.99796 -9.87295 -9.69729 -9.47057 -9.25393 -8.86236 -8.63875 -8.42477 -6.82098 -5.64284 -3.05939 0.62017 1.01867 2.78763 2.97640 3.25480 3.40573 3.45493 3.47679 3.64284 4.00228 4.14919 4.46591 4.50182 4.50565 4.68552 4.79604 4.81706 4.94697 5.05539 5.16656 5.17756 5.28155 5.29723 5.40273 5.43105 5.43936 5.54746 5.63770 5.73711 5.79185 5.87433 5.92158 5.97031 6.07555 6.12317 6.17025 6.27797 6.37748 6.50348 6.57892 6.61796 6.75849 6.89276 6.93723 7.52969 7.62050 7.63935 7.87174 8.34292 8.38013 9.23382 9.84378 10.49354 11.39679 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.002318 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.468909 B =12075.847093 C =12379.022318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 H 0.118 0.882 4 C -0.104 4.104 5 C -0.189 4.189 6 C -0.047 4.047 7 C -0.157 4.157 8 C -0.052 4.052 9 C -0.156 4.156 10 C 0.554 3.446 11 O -0.528 6.528 12 N -0.723 5.723 13 C 0.134 3.866 14 C -0.115 4.115 15 H 0.075 0.925 16 C -0.135 4.135 17 C 0.151 3.849 18 N -0.605 5.605 19 C -0.222 4.222 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.923 5.923 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.141 3.859 28 C 0.170 3.830 29 O -0.271 6.271 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.398 0.602 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.107 0.893 44 H 0.012 0.988 45 H 0.252 0.748 46 H 0.018 0.982 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.220 13.672 -23.300 27.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 H 0.135 0.865 4 C -0.141 4.141 5 C -0.190 4.190 6 C -0.065 4.065 7 C -0.175 4.175 8 C -0.071 4.071 9 C -0.159 4.159 10 C 0.341 3.659 11 O -0.406 6.406 12 N -0.375 5.375 13 C 0.011 3.989 14 C -0.134 4.134 15 H 0.094 0.906 16 C -0.174 4.174 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.350 4.350 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.015 3.985 28 C 0.122 3.878 29 O -0.183 6.183 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.234 0.766 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.125 0.875 44 H 0.030 0.970 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 5.035 14.456 -22.504 27.217 hybrid contribution -0.615 -1.198 -0.290 1.377 sum 4.420 13.258 -22.794 26.738 Atomic orbital electron populations 1.22243 0.93950 1.03345 1.03312 1.23539 0.95101 0.96673 0.83305 0.86465 1.21881 1.02720 0.90988 0.98539 1.20783 1.08878 0.95880 0.93419 1.20465 0.95536 0.90401 1.00122 1.20972 1.04498 0.98816 0.93185 1.21149 0.95082 0.95405 0.95447 1.19332 1.12224 0.91300 0.93093 1.18049 0.77215 0.84486 0.86153 1.90820 1.48620 1.26577 1.74552 1.45988 1.74084 1.09715 1.07680 1.21457 1.02221 0.97425 0.77817 1.22448 0.99344 0.93905 0.97703 0.90633 1.23004 1.00229 1.01558 0.92639 1.21940 0.89655 0.88422 0.97314 1.44515 1.28769 1.49462 1.10327 1.19079 1.01736 1.15750 0.98477 0.90550 1.24789 0.98966 1.00597 0.96392 1.69792 1.36017 1.45876 1.05443 0.86072 0.81503 0.80759 0.77168 1.21656 1.21638 1.20707 1.21336 0.93794 0.92829 0.90514 1.19450 0.91701 0.84831 0.91787 1.87078 1.78274 1.15809 1.37156 0.90946 0.90648 0.91863 0.88813 0.88994 0.85401 0.84714 0.84578 0.76639 0.91166 0.91558 0.91802 0.92107 0.87497 0.97039 0.93730 0.96440 0.95765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.49 37.16 0.35 -0.97 16 2 C 0.07 0.60 4.32 -25.83 -0.11 0.49 16 3 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.10 -0.72 6.65 -26.50 -0.18 -0.90 16 5 C -0.19 -1.82 6.26 -104.12 -0.65 -2.47 16 6 C -0.05 -0.38 10.02 -39.65 -0.40 -0.77 16 7 C -0.16 -1.27 10.05 -39.60 -0.40 -1.67 16 8 C -0.05 -0.52 9.51 -39.27 -0.37 -0.89 16 9 C -0.16 -2.05 5.89 -104.72 -0.62 -2.67 16 10 C 0.55 8.75 7.76 -12.47 -0.10 8.65 16 11 O -0.53 -10.33 15.87 -10.30 -0.16 -10.49 16 12 N -0.72 -10.16 5.42 -61.35 -0.33 -10.49 16 13 C 0.13 2.10 5.02 -4.04 -0.02 2.08 16 14 C -0.11 -1.95 2.94 -88.78 -0.26 -2.21 16 15 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 16 C -0.14 -2.55 6.53 -24.58 -0.16 -2.71 16 17 C 0.15 3.68 5.89 -2.53 -0.01 3.67 16 18 N -0.60 -15.57 3.39 -170.06 -0.58 -16.15 16 19 C -0.22 -6.24 10.27 -15.06 -0.15 -6.40 16 20 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 22 N -0.92 -27.05 10.09 55.49 0.56 -26.49 16 23 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.14 2.91 6.77 -3.06 -0.02 2.89 16 28 C 0.17 2.20 6.64 -38.44 -0.26 1.94 16 29 O -0.27 -3.70 9.84 -34.89 -0.34 -4.04 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.57 8.13 -51.92 -0.42 0.15 16 33 H 0.09 0.46 7.92 -51.93 -0.41 0.05 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 36 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.14 1.08 6.37 -52.48 -0.33 0.75 16 38 H 0.40 4.64 6.48 -40.82 -0.26 4.37 16 39 H 0.07 1.22 7.95 -51.93 -0.41 0.80 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.11 2.93 5.86 -51.93 -0.30 2.63 16 44 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.02 0.51 7.70 -51.93 -0.40 0.11 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -34.89 379.01 -10.79 -45.67 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.16 Total: 1.50 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -3.45 Total: -2.39 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -0.35 Total: -53.14 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.51 Total: -14.53 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.89 -10.79 -45.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028699852.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.069 kcal (2) G-P(sol) polarization free energy of solvation -34.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds