Wall clock time and date at job start Tue Mar 31 2020 16:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.66203 * 2 1 4 4 C 1.54707 * 110.89945 * 236.69588 * 2 1 3 5 5 C 1.51675 * 101.89099 * 266.96829 * 4 2 1 6 6 C 1.37313 * 132.06281 * 164.25571 * 5 4 2 7 7 C 1.39805 * 119.85772 * 180.55266 * 6 5 4 8 8 C 1.47603 * 120.26610 * 179.97438 * 7 6 5 9 9 O 1.21578 * 120.00023 * 5.62106 * 8 7 6 10 10 N 1.34778 * 119.99794 * 185.61449 * 8 7 6 11 11 C 1.47431 * 125.64819 * 183.83459 * 10 8 7 12 12 C 1.54913 * 104.83248 * 204.09440 * 11 10 8 13 13 C 1.55165 * 101.57679 * 322.98689 * 12 11 10 14 14 H 1.09004 * 110.71666 * 277.13803 * 13 12 11 15 15 N 1.46501 * 110.71586 * 153.86923 * 13 12 11 16 16 C 1.36933 * 120.00006 * 86.45586 * 15 13 12 17 17 H 1.08007 * 120.00048 * 359.97438 * 16 15 13 18 18 C 1.38813 * 120.00087 * 179.97438 * 16 15 13 19 19 N 1.31623 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00179 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.47066 * 90.00045 * 20 18 16 22 22 H 1.48500 * 109.47204 * 210.00320 * 20 18 16 23 23 H 1.48500 * 109.47315 * 330.00125 * 20 18 16 24 24 C 1.47024 * 125.64959 * 3.52307 * 10 8 7 25 25 H 1.09002 * 109.88366 * 298.39299 * 24 10 8 26 26 C 1.52994 * 109.88304 * 59.55974 * 24 10 8 27 27 C 1.39750 * 119.46747 * 359.95732 * 7 6 5 28 28 C 1.37473 * 120.20622 * 359.83887 * 27 7 6 29 29 C 1.39181 * 106.99809 * 344.47573 * 5 4 2 30 30 O 1.35997 * 111.17670 * 359.08557 * 29 5 4 31 31 H 1.09003 * 109.46878 * 298.24986 * 1 2 3 32 32 H 1.09002 * 109.47257 * 58.25221 * 1 2 3 33 33 H 1.08998 * 109.46991 * 178.24713 * 1 2 3 34 34 H 1.08999 * 110.94380 * 25.11612 * 4 2 1 35 35 H 1.08994 * 110.94879 * 148.81768 * 4 2 1 36 36 H 1.07996 * 120.06766 * 0.52499 * 6 5 4 37 37 H 1.09005 * 110.35919 * 322.92881 * 11 10 8 38 38 H 1.08995 * 110.37020 * 85.24785 * 11 10 8 39 39 H 1.08993 * 111.00650 * 81.05837 * 12 11 10 40 40 H 1.08998 * 111.00242 * 204.87768 * 12 11 10 41 41 H 0.96996 * 119.99752 * 266.44756 * 15 13 12 42 42 H 0.96997 * 120.00004 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.47278 * 73.89648 * 26 24 10 44 44 H 1.09003 * 109.47345 * 193.89959 * 26 24 10 45 45 H 1.08999 * 109.47127 * 313.90138 * 26 24 10 46 46 H 1.08004 * 119.90353 * 179.86683 * 27 7 6 47 47 H 1.08001 * 119.78827 * 180.37711 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0818 -0.7936 -1.2079 5 6 2.2667 -2.1772 -0.6147 6 6 2.4532 -3.4086 -1.1930 7 6 2.5866 -4.5431 -0.3869 8 6 2.7869 -5.8712 -0.9989 9 8 2.9387 -5.9699 -2.2011 10 7 2.8015 -6.9745 -0.2250 11 6 3.0698 -8.3474 -0.6908 12 6 2.3850 -9.2620 0.3553 13 6 2.6485 -8.4824 1.6707 14 1 3.6428 -8.7047 2.0581 15 7 1.6212 -8.7886 2.6692 16 6 1.7659 -9.8756 3.4893 17 1 2.6372 -10.5075 3.3997 18 6 0.7927 -10.1654 4.4358 19 7 -0.2689 -9.3951 4.5454 20 14 0.9898 -11.6487 5.5541 21 1 1.7152 -11.2470 6.7859 22 1 -0.3500 -12.1756 5.9181 23 1 1.7608 -12.7027 4.8471 24 6 2.5589 -7.0076 1.2248 25 1 3.3149 -6.4157 1.7408 26 6 1.1645 -6.4577 1.5316 27 6 2.5290 -4.4094 1.0030 28 6 2.3461 -3.1714 1.5719 29 6 2.2140 -2.0371 0.7690 30 8 2.0391 -0.7361 1.1247 31 1 -0.3633 0.4864 0.9053 32 1 -0.3634 0.5407 -0.8739 33 1 -0.3633 -1.0272 -0.0314 34 1 1.3597 -0.8129 -2.0242 35 1 3.0344 -0.3824 -1.5419 36 1 2.4964 -3.5006 -2.2681 37 1 2.6330 -8.5054 -1.6768 38 1 4.1430 -8.5366 -0.7156 39 1 1.3163 -9.3477 0.1593 40 1 2.8552 -10.2450 0.3821 41 1 0.8385 -8.2212 2.7495 42 1 -0.9491 -9.5978 5.2065 43 1 0.4126 -7.1920 1.2425 44 1 1.0813 -6.2534 2.5991 45 1 1.0061 -5.5360 0.9718 46 1 2.6290 -5.2814 1.6324 47 1 2.3088 -3.0750 2.6469 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074969709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:28 Heat of formation + Delta-G solvation = 20.179053 kcal Electronic energy + Delta-G solvation = -28768.687388 eV Core-core repulsion = 24918.990646 eV Total energy + Delta-G solvation = -3849.696742 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.56644 -40.42110 -37.79487 -37.19560 -34.19389 -33.46527 -32.40190 -31.56354 -30.53879 -30.00983 -28.86456 -26.93260 -25.44570 -24.20666 -23.55534 -22.21728 -21.86624 -21.71792 -19.89919 -19.19697 -17.87755 -17.35881 -17.22248 -16.29175 -15.98829 -15.70148 -15.50800 -14.70295 -14.62169 -14.42712 -14.08369 -13.90359 -13.72140 -13.64668 -13.13189 -12.98349 -12.83161 -12.63878 -12.56573 -12.38334 -12.32365 -11.90235 -11.83060 -11.55201 -11.47238 -11.35138 -11.10025 -10.95799 -10.84897 -10.59528 -10.45817 -10.28825 -10.06494 -9.80304 -9.67995 -9.00269 -8.94414 -8.50823 -8.18968 -7.08659 -5.87178 -3.17270 0.81832 1.23178 2.81301 3.01702 3.16148 3.38232 3.44249 3.45436 3.78295 4.12146 4.26604 4.48168 4.53733 4.60860 4.70252 4.81097 4.87567 4.98904 5.06457 5.16961 5.27154 5.28898 5.34659 5.41492 5.44487 5.48953 5.52463 5.55336 5.61534 5.74071 5.78408 5.86110 5.93327 6.01188 6.09228 6.13850 6.21382 6.23185 6.23976 6.35875 6.41054 6.51434 6.59251 6.63667 6.89372 6.99127 7.61956 7.71027 8.30547 8.32310 9.43211 9.96272 10.31396 11.35109 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015988 B = 0.003065 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.883227 B = 9132.592698 C =10482.104181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.076 3.924 3 H 0.115 0.885 4 C -0.103 4.103 5 C -0.196 4.196 6 C -0.008 4.008 7 C -0.168 4.168 8 C 0.579 3.421 9 O -0.552 6.552 10 N -0.603 5.603 11 C 0.106 3.894 12 C -0.154 4.154 13 C 0.175 3.825 14 H 0.066 0.934 15 N -0.717 5.717 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.009 4.009 19 N -0.931 5.931 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.107 3.893 25 H 0.087 0.913 26 C -0.181 4.181 27 C -0.074 4.074 28 C -0.155 4.155 29 C 0.133 3.867 30 O -0.298 6.298 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.135 0.865 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.391 0.609 42 H 0.257 0.743 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.182 0.818 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.442 17.130 -9.933 20.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.020 3.980 3 H 0.133 0.867 4 C -0.140 4.140 5 C -0.196 4.196 6 C -0.027 4.027 7 C -0.171 4.171 8 C 0.370 3.630 9 O -0.432 6.432 10 N -0.335 5.335 11 C -0.016 4.016 12 C -0.195 4.195 13 C 0.063 3.937 14 H 0.084 0.916 15 N -0.361 5.361 16 C -0.376 4.376 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.004 3.996 25 H 0.104 0.896 26 C -0.238 4.238 27 C -0.091 4.091 28 C -0.173 4.173 29 C 0.087 3.913 30 O -0.212 6.212 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.152 0.848 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.228 0.772 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.198 0.802 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.572 17.105 -10.277 20.472 hybrid contribution -0.309 -0.591 0.551 0.865 sum 4.263 16.514 -9.726 19.634 Atomic orbital electron populations 1.22255 0.94025 1.03534 1.03170 1.23452 0.94889 0.96352 0.83308 0.86680 1.21824 1.02615 0.91146 0.98367 1.20578 1.09979 0.95268 0.93824 1.20273 0.93051 0.89127 1.00290 1.19660 1.10432 0.93353 0.93666 1.17699 0.76569 0.83141 0.85601 1.90735 1.51675 1.86672 1.14099 1.48424 1.69024 1.07134 1.08965 1.22285 0.99852 0.80533 0.98978 1.23565 1.01250 0.98527 0.96150 1.21194 0.94495 0.88635 0.89333 0.91596 1.42612 1.22466 1.32418 1.38583 1.19223 1.04520 1.02991 1.10868 0.91005 1.24745 0.96911 0.99169 0.99727 1.69649 1.10839 1.39609 1.37739 0.86181 0.76806 0.82295 0.80818 1.21641 1.21775 1.20708 1.22300 0.97336 0.99862 0.80151 0.89617 1.22684 0.96469 1.01464 1.03205 1.22939 0.92056 0.98903 0.95191 1.20293 1.07871 0.88960 1.00196 1.19920 0.93611 0.84860 0.92865 1.86855 1.79422 1.16773 1.38138 0.91192 0.90602 0.91634 0.88922 0.89148 0.84759 0.90900 0.91685 0.90635 0.90409 0.77185 0.93351 0.90838 0.89904 0.91410 0.80216 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 9.51 37.16 0.35 -0.90 16 2 C 0.08 0.62 4.30 -25.84 -0.11 0.51 16 3 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.10 -0.85 6.66 -26.50 -0.18 -1.03 16 5 C -0.20 -2.31 6.25 -104.13 -0.65 -2.96 16 6 C -0.01 -0.11 9.58 -39.33 -0.38 -0.49 16 7 C -0.17 -2.44 5.27 -104.92 -0.55 -3.00 16 8 C 0.58 9.63 7.58 -12.44 -0.09 9.53 16 9 O -0.55 -10.54 16.61 5.30 0.09 -10.45 16 10 N -0.60 -9.47 3.08 -166.37 -0.51 -9.98 16 11 C 0.11 1.59 6.92 -2.52 -0.02 1.58 16 12 C -0.15 -2.53 6.77 -24.58 -0.17 -2.70 16 13 C 0.18 3.13 3.41 -66.09 -0.23 2.91 16 14 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 15 N -0.72 -16.23 5.02 -51.64 -0.26 -16.49 16 16 C -0.25 -6.30 9.98 -15.06 -0.15 -6.45 16 17 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 19 N -0.93 -26.56 13.06 55.49 0.72 -25.83 16 20 Si 0.91 21.39 29.55 -169.99 -5.02 16.37 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.11 1.65 2.71 -66.95 -0.18 1.47 16 25 H 0.09 1.20 6.15 -51.93 -0.32 0.88 16 26 C -0.18 -2.84 6.40 37.15 0.24 -2.60 16 27 C -0.07 -0.98 6.37 -39.30 -0.25 -1.23 16 28 C -0.15 -1.95 10.05 -39.35 -0.40 -2.35 16 29 C 0.13 1.67 6.96 -38.73 -0.27 1.40 16 30 O -0.30 -3.49 10.81 -19.73 -0.21 -3.70 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 34 H 0.09 0.64 7.93 -51.93 -0.41 0.23 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.13 1.73 7.67 -52.49 -0.40 1.32 16 37 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.39 9.25 4.98 -40.82 -0.20 9.05 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.07 1.30 7.22 -51.93 -0.37 0.93 16 44 H 0.08 1.33 7.69 -51.93 -0.40 0.93 16 45 H 0.07 1.00 4.49 -51.93 -0.23 0.76 16 46 H 0.18 2.36 2.14 -55.43 -0.12 2.24 16 47 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 367.38 15.07 5.54 5.54 Total: -1.00 -30.88 367.38 -9.43 -40.31 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -6.65 Total: 10.88 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -3.12 Total: -6.64 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.05 Total: -52.30 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.13 Total: -14.15 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.88 -9.43 -40.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074969709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.490 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds