Wall clock time and date at job start Tue Mar 31 2020 16:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.46810 * 2 1 4 4 N 1.46500 * 109.47375 * 239.99818 * 2 1 3 5 5 C 1.34773 * 119.99929 * 84.99680 * 4 2 1 6 6 O 1.21548 * 120.00173 * 0.02562 * 5 4 2 7 7 C 1.47882 * 119.99931 * 179.97438 * 5 4 2 8 8 C 1.39927 * 120.02607 * 359.73143 * 7 5 4 9 9 C 1.38326 * 120.35824 * 179.71409 * 8 7 5 10 10 C 1.37759 * 120.41107 * 0.56236 * 9 8 7 11 11 C 1.40745 * 120.03968 * 359.71171 * 10 9 8 12 12 C 1.41437 * 120.17568 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00394 * 335.22752 * 12 11 10 14 14 C 1.39937 * 119.99729 * 155.22292 * 12 11 10 15 15 N 1.30825 * 120.00200 * 342.73029 * 14 12 11 16 16 Si 1.86804 * 119.99932 * 162.72647 * 14 12 11 17 17 H 1.48497 * 109.47044 * 60.00006 * 16 14 12 18 18 H 1.48502 * 109.47129 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47211 * 300.00060 * 16 14 12 20 20 C 1.38997 * 120.02803 * 180.02562 * 7 5 4 21 21 C 1.50704 * 109.47222 * 119.99603 * 2 1 3 22 22 O 1.21277 * 120.00233 * 111.40664 * 21 2 1 23 23 N 1.34777 * 119.99817 * 291.40712 * 21 2 1 24 24 C 1.46929 * 120.63211 * 356.90022 * 23 21 2 25 25 C 1.53188 * 108.77478 * 233.61112 * 24 23 21 26 26 C 1.53045 * 109.31421 * 305.36417 * 25 24 23 27 27 C 1.53048 * 109.53692 * 61.36622 * 26 25 24 28 28 C 1.46925 * 120.63010 * 176.90404 * 23 21 2 29 29 H 1.08996 * 109.47440 * 305.02136 * 1 2 3 30 30 H 1.08998 * 109.46758 * 65.02417 * 1 2 3 31 31 H 1.09001 * 109.46691 * 185.02447 * 1 2 3 32 32 H 0.96997 * 120.00098 * 264.99850 * 4 2 1 33 33 H 1.08001 * 119.81533 * 359.97101 * 8 7 5 34 34 H 1.07991 * 119.79419 * 180.25487 * 9 8 7 35 35 H 1.08005 * 119.97920 * 179.74530 * 10 9 8 36 36 H 0.97005 * 120.00169 * 180.02562 * 15 14 12 37 37 H 1.08004 * 120.19967 * 359.97438 * 20 7 5 38 38 H 1.09001 * 109.58245 * 113.82258 * 24 23 21 39 39 H 1.08998 * 109.58678 * 353.39532 * 24 23 21 40 40 H 1.08998 * 109.49919 * 185.41823 * 25 24 23 41 41 H 1.08998 * 109.50078 * 65.31797 * 25 24 23 42 42 H 1.09001 * 109.46048 * 181.39020 * 26 25 24 43 43 H 1.08998 * 109.46290 * 301.34727 * 26 25 24 44 44 H 1.09000 * 109.49413 * 58.58943 * 27 26 25 45 45 H 1.08997 * 109.49171 * 178.68413 * 27 26 25 46 46 H 1.09008 * 109.58246 * 6.60354 * 28 23 21 47 47 H 1.09002 * 109.58684 * 246.17896 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8584 1.1611 -2.4116 7 6 2.6406 -0.7153 -3.5644 8 6 2.9795 -2.0715 -3.5006 9 6 3.4362 -2.7317 -4.6270 10 6 3.5738 -2.0594 -5.8216 11 6 3.2433 -0.6938 -5.9036 12 6 3.3829 -0.0009 -7.1287 13 1 4.0836 -0.3528 -7.8714 14 6 2.6129 1.1405 -7.3786 15 7 1.5456 1.3796 -6.6609 16 14 3.1091 2.3229 -8.7370 17 1 3.1205 1.6061 -10.0375 18 1 2.1367 3.4436 -8.7975 19 1 4.4650 2.8593 -8.4556 20 6 2.7740 -0.0224 -4.7619 21 6 2.0324 -0.7103 1.2305 22 8 2.5959 -1.7791 1.1262 23 7 1.8553 -0.1578 2.4470 24 6 1.2353 1.1672 2.5844 25 6 2.1634 2.0624 3.4115 26 6 2.4771 1.3742 4.7420 27 6 3.1951 0.0490 4.4760 28 6 2.2787 -0.8689 3.6610 29 1 -0.3634 0.5897 0.8415 30 1 -0.3633 0.4339 -0.9316 31 1 -0.3633 -1.0237 0.0900 32 1 2.2491 -1.6318 -1.1525 33 1 2.8799 -2.6065 -2.5677 34 1 3.6913 -3.7794 -4.5685 35 1 3.9349 -2.5808 -6.6958 36 1 1.0116 2.1707 -6.8343 37 1 2.5178 1.0254 -4.8147 38 1 0.2747 1.0703 3.0903 39 1 1.0885 1.6060 1.5976 40 1 1.6730 3.0169 3.6025 41 1 3.0896 2.2321 2.8625 42 1 3.1174 2.0200 5.3428 43 1 1.5484 1.1825 5.2795 44 1 4.1116 0.2377 3.9170 45 1 3.4389 -0.4293 5.4246 46 1 2.8203 -1.7736 3.3844 47 1 1.4031 -1.1318 4.2546 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057226929.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:45 Heat of formation + Delta-G solvation = -62.002159 kcal Electronic energy + Delta-G solvation = -28091.918179 eV Core-core repulsion = 24238.657792 eV Total energy + Delta-G solvation = -3853.260387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.71361 -39.10488 -37.64634 -36.95952 -34.76146 -33.73483 -33.24177 -31.66777 -30.78698 -29.48464 -29.23380 -26.16190 -25.30453 -24.26062 -23.55982 -22.26795 -21.01391 -20.75671 -19.64010 -19.27344 -17.99939 -16.98967 -16.72334 -15.84171 -15.64741 -15.24016 -15.06537 -14.85197 -14.61028 -14.46479 -14.24946 -14.01720 -13.79723 -13.53693 -13.21156 -13.13876 -12.89844 -12.58388 -12.49081 -12.37968 -12.21316 -11.72855 -11.62827 -11.53467 -11.31101 -11.13146 -11.06194 -11.03147 -10.93211 -10.71033 -10.48747 -10.02565 -9.85113 -9.66030 -9.19156 -9.05904 -8.93436 -8.75502 -7.60786 -7.48611 -6.77343 -4.38857 2.20897 2.42801 2.62755 2.84765 3.08575 3.10457 3.18752 3.65947 3.85122 3.93682 4.19749 4.38445 4.50293 4.56717 4.65872 4.71840 4.91673 5.00478 5.07697 5.14745 5.17845 5.38327 5.43603 5.46034 5.48680 5.57118 5.63486 5.68858 5.71609 5.72316 5.86221 5.95748 6.14172 6.14754 6.24067 6.34723 6.74279 6.75494 7.00748 7.04153 7.12357 7.24028 7.40982 7.73450 7.78815 7.93319 7.95700 8.11136 8.21348 8.52709 8.82410 8.85754 8.92084 10.17374 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.002638 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.851639 B =10612.939587 C =11451.968320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.128 3.872 3 H 0.109 0.891 4 N -0.721 5.721 5 C 0.569 3.431 6 O -0.547 6.547 7 C -0.128 4.128 8 C -0.213 4.213 9 C -0.098 4.098 10 C -0.210 4.210 11 C 0.098 3.902 12 C -0.461 4.461 13 H 0.080 0.920 14 C 0.073 3.927 15 N -0.785 5.785 16 Si 0.911 3.089 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.090 4.090 21 C 0.517 3.483 22 O -0.533 6.533 23 N -0.610 5.610 24 C 0.100 3.900 25 C -0.138 4.138 26 C -0.120 4.120 27 C -0.136 4.136 28 C 0.111 3.889 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.409 0.591 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.284 0.716 37 H 0.135 0.865 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.093 0.907 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.284 1.069 20.484 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.019 3.981 3 H 0.127 0.873 4 N -0.377 5.377 5 C 0.361 3.639 6 O -0.426 6.426 7 C -0.131 4.131 8 C -0.234 4.234 9 C -0.117 4.117 10 C -0.230 4.230 11 C 0.095 3.905 12 C -0.490 4.490 13 H 0.099 0.901 14 C -0.145 4.145 15 N -0.410 5.410 16 Si 0.735 3.265 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.188 1.188 20 C -0.111 4.111 21 C 0.304 3.696 22 O -0.409 6.409 23 N -0.345 5.345 24 C -0.023 4.023 25 C -0.176 4.176 26 C -0.157 4.157 27 C -0.174 4.174 28 C -0.012 4.012 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.248 0.752 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.152 0.848 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.111 0.889 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.399 1.501 20.405 20.600 hybrid contribution 0.181 0.110 -0.430 0.479 sum -2.219 1.611 19.974 20.162 Atomic orbital electron populations 1.22217 0.93045 1.02925 1.03790 1.20618 0.95608 0.97988 0.83888 0.87320 1.45800 1.68939 1.14955 1.08017 1.18857 0.76020 0.86207 0.82866 1.90680 1.50725 1.16031 1.85118 1.19411 1.06379 0.94465 0.92888 1.20419 1.11299 0.93988 0.97650 1.20447 1.00204 0.97645 0.93375 1.21116 1.10689 0.94550 0.96603 1.17591 0.89512 0.90645 0.92747 1.19542 1.19968 1.08186 1.01294 0.90144 1.25953 0.93414 0.97867 0.97315 1.69782 1.10358 1.25017 1.35815 0.86328 0.79634 0.79574 0.80982 1.18990 1.20253 1.18758 1.21636 0.99529 1.00418 0.89480 1.20804 0.78461 0.85725 0.84582 1.90683 1.42079 1.22290 1.85864 1.48018 1.61423 1.19230 1.05800 1.21951 0.96026 0.82339 1.01957 1.21949 1.00581 0.98590 0.96515 1.21519 1.00696 0.96484 0.97027 1.21923 0.99057 0.96159 1.00242 1.21602 0.98453 0.96087 0.85028 0.91287 0.90196 0.91916 0.75249 0.88987 0.88830 0.88591 0.90454 0.84756 0.90888 0.88909 0.90375 0.91191 0.91609 0.91717 0.91384 0.90704 0.88864 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.15 37.16 0.34 -1.66 16 2 C 0.13 1.87 2.13 -69.08 -0.15 1.72 16 3 H 0.11 1.61 6.52 -51.92 -0.34 1.27 16 4 N -0.72 -13.05 4.95 -55.86 -0.28 -13.32 16 5 C 0.57 12.66 7.74 -12.31 -0.10 12.56 16 6 O -0.55 -13.35 16.00 5.32 0.09 -13.27 16 7 C -0.13 -3.11 5.87 -105.04 -0.62 -3.73 16 8 C -0.21 -4.73 9.55 -38.92 -0.37 -5.10 16 9 C -0.10 -2.18 10.01 -39.72 -0.40 -2.58 16 10 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 11 C 0.10 2.61 5.57 -106.87 -0.60 2.02 16 12 C -0.46 -12.20 9.05 -37.73 -0.34 -12.54 16 13 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 14 C 0.07 1.86 5.15 -17.34 -0.09 1.77 16 15 N -0.79 -20.81 10.94 55.55 0.61 -20.20 16 16 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 17 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 18 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 20 C -0.09 -2.44 8.24 -38.44 -0.32 -2.76 16 21 C 0.52 7.16 7.05 -10.98 -0.08 7.08 16 22 O -0.53 -9.02 15.24 5.56 0.08 -8.94 16 23 N -0.61 -6.31 2.97 -172.77 -0.51 -6.83 16 24 C 0.10 0.77 5.13 -3.71 -0.02 0.75 16 25 C -0.14 -0.93 6.08 -26.61 -0.16 -1.09 16 26 C -0.12 -0.72 5.88 -26.68 -0.16 -0.88 16 27 C -0.14 -0.97 6.08 -26.61 -0.16 -1.13 16 28 C 0.11 0.98 6.44 -3.71 -0.02 0.95 16 29 H 0.07 0.64 6.07 -51.93 -0.32 0.32 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.41 7.28 5.74 -40.82 -0.23 7.04 16 33 H 0.09 1.79 6.38 -52.49 -0.33 1.46 16 34 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 35 H 0.10 2.16 8.06 -52.48 -0.42 1.73 16 36 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 37 H 0.13 3.88 5.74 -52.48 -0.30 3.58 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.75 4.89 -51.93 -0.25 0.50 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.99 7.00 -51.92 -0.36 0.63 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 375.98 15.07 5.67 5.67 Total: -1.00 -31.20 375.98 -9.75 -40.95 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -6.76 Total: 12.17 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -3.61 Total: -10.06 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: -0.18 Total: -40.36 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: 0.17 Total: -22.20 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.20 -9.75 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057226929.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.051 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds