Wall clock time and date at job start Tue Mar 31 2020 16:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.46810 * 2 1 4 4 N 1.46500 * 109.47375 * 239.99818 * 2 1 3 5 5 C 1.34773 * 119.99929 * 84.99680 * 4 2 1 6 6 O 1.21548 * 120.00173 * 0.02562 * 5 4 2 7 7 C 1.47882 * 119.99931 * 179.97438 * 5 4 2 8 8 C 1.39927 * 120.02607 * 359.73143 * 7 5 4 9 9 C 1.38326 * 120.35824 * 179.71409 * 8 7 5 10 10 C 1.37759 * 120.41107 * 0.56236 * 9 8 7 11 11 C 1.40745 * 120.03968 * 359.71171 * 10 9 8 12 12 C 1.41437 * 120.17568 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00394 * 335.22752 * 12 11 10 14 14 C 1.39937 * 119.99729 * 155.22292 * 12 11 10 15 15 N 1.30825 * 120.00200 * 342.73029 * 14 12 11 16 16 Si 1.86804 * 119.99932 * 162.72647 * 14 12 11 17 17 H 1.48497 * 109.47044 * 60.00006 * 16 14 12 18 18 H 1.48502 * 109.47129 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47211 * 300.00060 * 16 14 12 20 20 C 1.38997 * 120.02803 * 180.02562 * 7 5 4 21 21 C 1.50704 * 109.47222 * 119.99603 * 2 1 3 22 22 O 1.21277 * 120.00233 * 111.40664 * 21 2 1 23 23 N 1.34777 * 119.99817 * 291.40712 * 21 2 1 24 24 C 1.46929 * 120.63211 * 356.90022 * 23 21 2 25 25 C 1.53188 * 108.77478 * 233.61112 * 24 23 21 26 26 C 1.53045 * 109.31421 * 305.36417 * 25 24 23 27 27 C 1.53048 * 109.53692 * 61.36622 * 26 25 24 28 28 C 1.46925 * 120.63010 * 176.90404 * 23 21 2 29 29 H 1.08996 * 109.47440 * 305.02136 * 1 2 3 30 30 H 1.08998 * 109.46758 * 65.02417 * 1 2 3 31 31 H 1.09001 * 109.46691 * 185.02447 * 1 2 3 32 32 H 0.96997 * 120.00098 * 264.99850 * 4 2 1 33 33 H 1.08001 * 119.81533 * 359.97101 * 8 7 5 34 34 H 1.07991 * 119.79419 * 180.25487 * 9 8 7 35 35 H 1.08005 * 119.97920 * 179.74530 * 10 9 8 36 36 H 0.97005 * 120.00169 * 180.02562 * 15 14 12 37 37 H 1.08004 * 120.19967 * 359.97438 * 20 7 5 38 38 H 1.09001 * 109.58245 * 113.82258 * 24 23 21 39 39 H 1.08998 * 109.58678 * 353.39532 * 24 23 21 40 40 H 1.08998 * 109.49919 * 185.41823 * 25 24 23 41 41 H 1.08998 * 109.50078 * 65.31797 * 25 24 23 42 42 H 1.09001 * 109.46048 * 181.39020 * 26 25 24 43 43 H 1.08998 * 109.46290 * 301.34727 * 26 25 24 44 44 H 1.09000 * 109.49413 * 58.58943 * 27 26 25 45 45 H 1.08997 * 109.49171 * 178.68413 * 27 26 25 46 46 H 1.09008 * 109.58246 * 6.60354 * 28 23 21 47 47 H 1.09002 * 109.58684 * 246.17896 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8584 1.1611 -2.4116 7 6 2.6406 -0.7153 -3.5644 8 6 2.9795 -2.0715 -3.5006 9 6 3.4362 -2.7317 -4.6270 10 6 3.5738 -2.0594 -5.8216 11 6 3.2433 -0.6938 -5.9036 12 6 3.3829 -0.0009 -7.1287 13 1 4.0836 -0.3528 -7.8714 14 6 2.6129 1.1405 -7.3786 15 7 1.5456 1.3796 -6.6609 16 14 3.1091 2.3229 -8.7370 17 1 3.1205 1.6061 -10.0375 18 1 2.1367 3.4436 -8.7975 19 1 4.4650 2.8593 -8.4556 20 6 2.7740 -0.0224 -4.7619 21 6 2.0324 -0.7103 1.2305 22 8 2.5959 -1.7791 1.1262 23 7 1.8553 -0.1578 2.4470 24 6 1.2353 1.1672 2.5844 25 6 2.1634 2.0624 3.4115 26 6 2.4771 1.3742 4.7420 27 6 3.1951 0.0490 4.4760 28 6 2.2787 -0.8689 3.6610 29 1 -0.3634 0.5897 0.8415 30 1 -0.3633 0.4339 -0.9316 31 1 -0.3633 -1.0237 0.0900 32 1 2.2491 -1.6318 -1.1525 33 1 2.8799 -2.6065 -2.5677 34 1 3.6913 -3.7794 -4.5685 35 1 3.9349 -2.5808 -6.6958 36 1 1.0116 2.1707 -6.8343 37 1 2.5178 1.0254 -4.8147 38 1 0.2747 1.0703 3.0903 39 1 1.0885 1.6060 1.5976 40 1 1.6730 3.0169 3.6025 41 1 3.0896 2.2321 2.8625 42 1 3.1174 2.0200 5.3428 43 1 1.5484 1.1825 5.2795 44 1 4.1116 0.2377 3.9170 45 1 3.4389 -0.4293 5.4246 46 1 2.8203 -1.7736 3.3844 47 1 1.4031 -1.1318 4.2546 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057226929.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:44 Heat of formation + Delta-G solvation = -80.616025 kcal Electronic energy + Delta-G solvation = -28092.725337 eV Core-core repulsion = 24238.657792 eV Total energy + Delta-G solvation = -3854.067545 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.82248 -40.66185 -38.91989 -38.42711 -36.18477 -35.60186 -34.15266 -32.74140 -32.00743 -31.32616 -30.76161 -27.24776 -26.98951 -25.42087 -24.38369 -23.62039 -22.82366 -21.73463 -21.25264 -20.26954 -19.59146 -18.37828 -18.03732 -17.20285 -17.07709 -16.70678 -16.43344 -16.16226 -15.89384 -15.52896 -15.37877 -15.10831 -14.96432 -14.87747 -14.52001 -14.34921 -14.29195 -14.08258 -13.67152 -13.50848 -13.45627 -13.14245 -12.93553 -12.80275 -12.75525 -12.51790 -12.23133 -12.20599 -11.92447 -11.87097 -11.64766 -11.53107 -11.51075 -11.06980 -10.96579 -10.83692 -10.30163 -9.75003 -9.50596 -9.40958 -8.66123 -6.38489 0.33672 0.99698 1.34244 1.37276 1.48443 1.51362 1.63885 2.04987 2.19914 2.27690 2.77510 3.21720 3.67773 3.76417 3.87555 3.92492 3.95168 4.01652 4.05948 4.10284 4.33878 4.39600 4.47273 4.50787 4.57146 4.61038 4.66751 4.80416 4.87873 4.89254 4.91359 5.02291 5.07497 5.08729 5.14109 5.16199 5.22627 5.28218 5.32469 5.43461 5.49616 5.51070 5.83753 5.90816 6.03531 6.17867 6.25969 6.43782 6.61366 6.87134 6.90920 6.92751 7.19806 8.30685 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.002638 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.851639 B =10612.939587 C =11451.968320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.123 3.877 3 H 0.106 0.894 4 N -0.707 5.707 5 C 0.569 3.431 6 O -0.577 6.577 7 C -0.139 4.139 8 C -0.202 4.202 9 C -0.096 4.096 10 C -0.216 4.216 11 C 0.067 3.933 12 C -0.496 4.496 13 H 0.085 0.915 14 C 0.030 3.970 15 N -0.823 5.823 16 Si 0.984 3.016 17 H -0.253 1.253 18 H -0.270 1.270 19 H -0.261 1.261 20 C -0.125 4.125 21 C 0.517 3.483 22 O -0.571 6.571 23 N -0.600 5.600 24 C 0.091 3.909 25 C -0.137 4.137 26 C -0.116 4.116 27 C -0.132 4.132 28 C 0.106 3.894 29 H 0.106 0.894 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.412 0.588 33 H 0.124 0.876 34 H 0.136 0.864 35 H 0.111 0.889 36 H 0.288 0.712 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.721 0.693 22.614 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.015 3.985 3 H 0.124 0.876 4 N -0.361 5.361 5 C 0.359 3.641 6 O -0.458 6.458 7 C -0.142 4.142 8 C -0.222 4.222 9 C -0.114 4.114 10 C -0.236 4.236 11 C 0.065 3.935 12 C -0.525 4.525 13 H 0.103 0.897 14 C -0.185 4.185 15 N -0.449 5.449 16 Si 0.804 3.196 17 H -0.177 1.177 18 H -0.195 1.195 19 H -0.185 1.185 20 C -0.146 4.146 21 C 0.304 3.696 22 O -0.450 6.450 23 N -0.333 5.333 24 C -0.030 4.030 25 C -0.175 4.175 26 C -0.154 4.154 27 C -0.170 4.170 28 C -0.015 4.015 29 H 0.124 0.876 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.251 0.749 33 H 0.142 0.858 34 H 0.153 0.847 35 H 0.129 0.871 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.066 0.934 45 H 0.112 0.888 46 H 0.090 0.910 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.848 1.116 22.602 22.808 hybrid contribution 0.316 0.127 -0.889 0.952 sum -2.532 1.242 21.714 21.896 Atomic orbital electron populations 1.22164 0.91073 1.03731 1.04154 1.20863 0.97124 0.97497 0.83022 0.87650 1.45648 1.67594 1.14913 1.07983 1.18630 0.76085 0.85821 0.83578 1.90654 1.52230 1.17216 1.85699 1.19721 1.05904 0.95589 0.93008 1.20807 1.09217 0.93066 0.99114 1.20891 0.98682 0.99529 0.92267 1.21407 1.10163 0.93806 0.98188 1.17958 0.90416 0.92091 0.93037 1.19838 1.21076 1.09854 1.01756 0.89716 1.26867 0.92829 0.99108 0.99744 1.69877 1.11533 1.25728 1.37731 0.85221 0.79142 0.77189 0.78000 1.17691 1.19479 1.18545 1.21453 1.02519 0.99534 0.91085 1.20567 0.78448 0.85273 0.85291 1.90665 1.44070 1.23857 1.86434 1.48108 1.60139 1.19943 1.05090 1.22240 0.97409 0.80986 1.02392 1.21958 0.99638 0.99403 0.96530 1.21524 1.01505 0.95620 0.96709 1.21908 0.97896 0.96778 1.00417 1.21784 0.99610 0.95573 0.84556 0.87596 0.92514 0.91456 0.74922 0.85819 0.84659 0.87137 0.90164 0.87738 0.87974 0.89473 0.88358 0.93158 0.90737 0.89980 0.93433 0.88824 0.91016 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.15 71.98 0.66 -2.97 16 2 C 0.12 3.55 2.13 44.25 0.09 3.64 16 3 H 0.11 3.14 6.52 -2.38 -0.02 3.12 16 4 N -0.71 -25.66 4.95 -448.93 -2.22 -27.88 16 5 C 0.57 26.00 7.74 86.80 0.67 26.67 16 6 O -0.58 -29.42 16.00 -3.87 -0.06 -29.49 16 7 C -0.14 -6.91 5.87 -20.13 -0.12 -7.03 16 8 C -0.20 -8.76 9.55 22.70 0.22 -8.54 16 9 C -0.10 -4.08 10.01 22.18 0.22 -3.86 16 10 C -0.22 -10.46 9.78 22.77 0.22 -10.23 16 11 C 0.07 3.73 5.57 -21.32 -0.12 3.62 16 12 C -0.50 -27.26 9.05 23.47 0.21 -27.05 16 13 H 0.08 4.38 7.90 -2.91 -0.02 4.36 16 14 C 0.03 1.56 5.15 85.25 0.44 2.00 16 15 N -0.82 -45.80 10.94 21.82 0.24 -45.56 16 16 Si 0.98 39.59 29.59 68.60 2.03 41.62 16 17 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 18 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 19 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 20 C -0.13 -7.10 8.24 23.01 0.19 -6.91 16 21 C 0.52 13.91 7.05 87.66 0.62 14.53 16 22 O -0.57 -19.13 15.24 -3.02 -0.05 -19.18 16 23 N -0.60 -11.37 2.97 -818.90 -2.43 -13.80 16 24 C 0.09 1.17 5.13 86.36 0.44 1.61 16 25 C -0.14 -1.51 6.08 30.67 0.19 -1.32 16 26 C -0.12 -1.03 5.88 30.63 0.18 -0.85 16 27 C -0.13 -1.60 6.08 30.67 0.19 -1.42 16 28 C 0.11 1.67 6.44 86.36 0.56 2.23 16 29 H 0.11 1.69 6.07 -2.39 -0.01 1.68 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.41 14.41 5.74 -92.71 -0.53 13.87 16 33 H 0.12 4.53 6.38 -2.91 -0.02 4.51 16 34 H 0.14 4.62 8.06 -2.92 -0.02 4.60 16 35 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 36 H 0.29 14.70 8.30 -92.70 -0.77 13.93 16 37 H 0.10 6.48 5.74 -2.91 -0.02 6.46 16 38 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.09 1.24 4.89 -2.39 -0.01 1.23 16 40 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.07 1.47 7.00 -2.38 -0.02 1.45 16 47 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -72.14 375.98 2.83 -69.31 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: 0.46 Total: 40.86 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 4.86 Total: -15.89 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -4.42 Total: -87.24 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -0.11 Total: -48.66 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -72.14 2.83 -69.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057226929.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.301 kcal (2) G-P(sol) polarization free energy of solvation -72.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds