Wall clock time and date at job start Tue Mar 31 2020 17:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46905 * 109.47276 * 2 1 4 4 C 1.46895 * 110.99970 * 65.17582 * 3 2 1 5 5 C 1.50703 * 109.47046 * 66.04997 * 4 3 2 6 6 O 1.21281 * 119.99763 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00308 * 180.02562 * 5 4 3 8 8 C 1.46493 * 120.00175 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47307 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00121 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00509 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99715 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00152 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46838 * 60.00919 * 13 11 9 15 15 H 1.48503 * 109.46740 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47336 * 300.00408 * 13 11 9 17 17 C 1.46903 * 110.99528 * 301.22561 * 3 2 1 18 18 H 1.08997 * 109.47275 * 66.95523 * 17 3 2 19 19 C 1.52997 * 109.46559 * 186.95352 * 17 3 2 20 20 C 1.50697 * 109.47500 * 306.94999 * 17 3 2 21 21 C 1.33995 * 124.92540 * 133.88602 * 20 17 3 22 22 C 1.46778 * 106.18747 * 179.90157 * 21 20 17 23 23 C 1.39409 * 134.36822 * 180.11877 * 22 21 20 24 24 C 1.36744 * 119.71436 * 180.26914 * 23 22 21 25 25 C 1.38740 * 120.41604 * 359.97438 * 24 23 22 26 26 C 1.37850 * 120.68806 * 0.02562 * 25 24 23 27 27 C 1.38943 * 119.81563 * 359.97438 * 26 25 24 28 28 O 1.34458 * 124.92393 * 314.20064 * 20 17 3 29 29 H 1.08999 * 109.47462 * 176.50493 * 1 2 3 30 30 H 1.09004 * 109.47055 * 296.50548 * 1 2 3 31 31 H 1.09006 * 109.47453 * 56.50074 * 1 2 3 32 32 H 1.09000 * 109.46681 * 119.99935 * 2 1 3 33 33 H 1.09000 * 109.47240 * 240.00179 * 2 1 3 34 34 H 1.09001 * 109.47439 * 186.04837 * 4 3 2 35 35 H 1.08999 * 109.47419 * 306.04984 * 4 3 2 36 36 H 0.97002 * 119.99966 * 359.97438 * 7 5 4 37 37 H 1.08997 * 109.47339 * 299.99177 * 8 7 5 38 38 H 1.09003 * 109.47768 * 59.99561 * 8 7 5 39 39 H 0.96998 * 120.00300 * 179.97438 * 12 11 9 40 40 H 1.09008 * 109.47053 * 179.97438 * 19 17 3 41 41 H 1.09004 * 109.47798 * 299.99792 * 19 17 3 42 42 H 1.08997 * 109.47187 * 60.00117 * 19 17 3 43 43 H 1.08003 * 126.90282 * 0.03225 * 21 20 17 44 44 H 1.07995 * 120.14650 * 0.28810 * 23 22 21 45 45 H 1.07994 * 119.78836 * 180.02562 * 24 23 22 46 46 H 1.08002 * 119.65809 * 179.97438 * 25 24 23 47 47 H 1.07994 * 120.09061 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6523 2.0733 1.2447 5 6 2.3765 1.4370 2.4031 6 8 3.1246 0.5020 2.2107 7 7 2.1921 1.9064 3.6529 8 6 2.8957 1.2875 4.7790 9 6 2.5190 1.9936 6.0559 10 1 1.8246 2.8204 6.0312 11 6 3.0600 1.5834 7.2560 12 7 3.9052 0.5763 7.2862 13 14 2.5935 2.4592 8.8387 14 1 1.1277 2.3512 9.0506 15 1 3.3066 1.8317 9.9802 16 1 2.9759 3.8910 8.7434 17 6 1.5248 2.1183 -1.1728 18 1 0.4444 2.2400 -1.0959 19 6 2.1903 3.4947 -1.2317 20 6 1.8556 1.3465 -2.4242 21 6 1.0013 1.1127 -3.4296 22 6 1.7460 0.3347 -4.4268 23 6 1.4328 -0.2081 -5.6722 24 6 2.3828 -0.9050 -6.3661 25 6 3.6549 -1.0743 -5.8387 26 6 3.9828 -0.5449 -4.6089 27 6 3.0323 0.1667 -3.8874 28 8 3.0491 0.7876 -2.6910 29 1 -0.3634 -1.0257 -0.0626 30 1 -0.3633 0.4586 0.9197 31 1 -0.3634 0.5672 -0.8570 32 1 1.8932 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.9318 3.1245 1.1747 35 1 0.5765 1.9929 1.4004 36 1 1.5935 2.6540 3.8068 37 1 2.6160 0.2363 4.8487 38 1 3.9716 1.3677 4.6237 39 1 4.2861 0.2880 8.1304 40 1 1.8234 4.0387 -2.1022 41 1 1.9511 4.0531 -0.3266 42 1 3.2707 3.3729 -1.3086 43 1 -0.0278 1.4341 -3.4943 44 1 0.4443 -0.0784 -6.0872 45 1 2.1417 -1.3256 -7.3311 46 1 4.3957 -1.6273 -6.3972 47 1 4.9761 -0.6821 -4.2078 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064348883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:56 Heat of formation + Delta-G solvation = 1.758567 kcal Electronic energy + Delta-G solvation = -27880.194656 eV Core-core repulsion = 24029.699142 eV Total energy + Delta-G solvation = -3850.495514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.65635 -39.54391 -38.17479 -37.33976 -34.16064 -33.25543 -32.34640 -32.14856 -30.58495 -30.37303 -28.56667 -27.69310 -26.15329 -23.88383 -23.17626 -22.73186 -22.08410 -21.47097 -20.14563 -19.41584 -17.50113 -17.28073 -16.86328 -16.43897 -16.01036 -15.88515 -15.64595 -15.20939 -14.79643 -14.64583 -14.38679 -14.13963 -13.93157 -13.61605 -13.36366 -13.18291 -13.02081 -12.60468 -12.50344 -12.35188 -12.30123 -12.15721 -11.94650 -11.85505 -11.68647 -11.58688 -11.16662 -11.09103 -10.97560 -10.88500 -10.55713 -10.30344 -10.27694 -9.40650 -9.00977 -8.79668 -8.72311 -8.34191 -8.23953 -7.84424 -6.16145 -4.23250 0.70783 1.17607 2.15064 2.55631 3.24964 3.29751 3.31177 3.39432 3.51481 3.55371 4.11728 4.23272 4.41042 4.46237 4.71591 4.76893 4.88059 4.90048 4.99706 5.07741 5.12127 5.19680 5.20778 5.23496 5.25784 5.39090 5.42677 5.44115 5.52802 5.59073 5.64839 5.69461 5.91410 5.98731 6.03177 6.05604 6.08125 6.21524 6.21855 6.36167 6.46595 6.91642 6.96573 7.16219 7.33266 7.46255 7.53301 7.67837 7.97926 8.64419 8.79681 9.13960 9.43483 10.93948 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.028165 B = 0.002165 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.913889 B =12929.439367 C =13242.444779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.043 3.957 3 N -0.507 5.507 4 C 0.026 3.974 5 C 0.500 3.500 6 O -0.536 6.536 7 N -0.715 5.715 8 C 0.252 3.748 9 C -0.544 4.544 10 H 0.062 0.938 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.275 1.275 17 C 0.150 3.850 18 H 0.078 0.922 19 C -0.150 4.150 20 C 0.068 3.932 21 C -0.217 4.217 22 C -0.127 4.127 23 C -0.075 4.075 24 C -0.138 4.138 25 C -0.099 4.099 26 C -0.104 4.104 27 C 0.051 3.949 28 O -0.171 6.171 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.389 0.611 37 H 0.025 0.975 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.155 0.845 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.133 0.867 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.702 2.200 -26.159 27.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.084 4.084 3 N -0.231 5.231 4 C -0.104 4.104 5 C 0.284 3.716 6 O -0.414 6.414 7 N -0.364 5.364 8 C 0.132 3.868 9 C -0.582 4.582 10 H 0.080 0.920 11 C -0.141 4.141 12 N -0.522 5.522 13 Si 0.731 3.269 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 C 0.041 3.959 18 H 0.095 0.905 19 C -0.207 4.207 20 C 0.019 3.981 21 C -0.237 4.237 22 C -0.128 4.128 23 C -0.093 4.093 24 C -0.157 4.157 25 C -0.117 4.117 26 C -0.122 4.122 27 C 0.003 3.997 28 O -0.071 6.071 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.082 0.918 36 H 0.221 0.779 37 H 0.043 0.957 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.173 0.827 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.151 0.849 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.260 1.395 -25.978 26.758 hybrid contribution -1.548 0.780 0.966 1.984 sum -7.808 2.175 -25.012 26.292 Atomic orbital electron populations 1.22466 0.98613 1.02636 1.01462 1.22380 0.92094 0.89230 1.04741 1.61973 1.59226 1.02210 0.99664 1.22147 0.98892 0.99756 0.89648 1.20191 0.83030 0.84435 0.83940 1.90640 1.37650 1.28591 1.84487 1.46440 1.47091 1.35713 1.07205 1.19067 0.92490 0.93728 0.81560 1.21190 1.28132 1.17382 0.91524 0.91983 1.24958 0.94746 0.95027 0.99321 1.69964 1.29286 1.25977 1.27003 0.86477 0.78612 0.79677 0.82139 1.20100 1.21081 1.20068 1.20370 0.98101 0.92517 0.84879 0.90490 1.21959 1.02605 0.93729 1.02421 1.22117 0.82918 0.96394 0.96677 1.22143 1.00664 1.06384 0.94504 1.19914 0.93924 1.02358 0.96645 1.20254 0.99650 0.96860 0.92540 1.20750 0.93535 1.00838 1.00535 1.20909 0.96972 0.99362 0.94457 1.20004 0.98505 0.99256 0.94458 1.19719 0.95969 0.98350 0.85632 1.84117 1.33524 1.57222 1.32230 0.91860 0.92356 0.92892 0.87754 0.91083 0.87894 0.91845 0.77880 0.95657 0.95548 0.92392 0.91646 0.91036 0.90806 0.82734 0.85769 0.85551 0.84921 0.84972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.26 9.24 37.16 0.34 -1.92 16 2 C 0.04 0.63 5.32 -3.82 -0.02 0.61 16 3 N -0.51 -7.21 4.31 -229.48 -0.99 -8.20 16 4 C 0.03 0.37 5.13 -4.98 -0.03 0.34 16 5 C 0.50 9.79 7.51 -10.98 -0.08 9.70 16 6 O -0.54 -12.80 14.34 5.56 0.08 -12.72 16 7 N -0.72 -14.75 5.55 -61.48 -0.34 -15.09 16 8 C 0.25 6.65 5.43 -5.20 -0.03 6.63 16 9 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 10 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 13 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 C 0.15 1.66 1.91 -68.87 -0.13 1.53 16 18 H 0.08 0.71 6.56 -51.93 -0.34 0.37 16 19 C -0.15 -1.46 9.05 37.16 0.34 -1.12 16 20 C 0.07 0.82 4.27 -35.80 -0.15 0.67 16 21 C -0.22 -2.35 10.98 -37.62 -0.41 -2.76 16 22 C -0.13 -1.48 6.40 -105.16 -0.67 -2.15 16 23 C -0.07 -0.70 10.05 -39.69 -0.40 -1.10 16 24 C -0.14 -1.13 9.98 -39.94 -0.40 -1.53 16 25 C -0.10 -0.84 10.01 -39.54 -0.40 -1.23 16 26 C -0.10 -1.10 10.07 -39.46 -0.40 -1.50 16 27 C 0.05 0.66 7.42 -38.47 -0.29 0.37 16 28 O -0.17 -2.46 10.18 3.90 0.04 -2.42 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.68 6.57 -51.93 -0.34 0.34 16 31 H 0.05 0.54 6.26 -51.93 -0.33 0.21 16 32 H 0.10 1.89 5.81 -51.93 -0.30 1.58 16 33 H 0.07 1.08 6.65 -51.93 -0.35 0.74 16 34 H 0.10 1.20 5.95 -51.93 -0.31 0.89 16 35 H 0.06 0.75 6.25 -51.93 -0.32 0.42 16 36 H 0.39 6.77 8.32 -40.82 -0.34 6.43 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.07 0.61 6.27 -51.93 -0.33 0.29 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 46 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 47 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 381.58 15.07 5.75 5.75 Total: -1.00 -33.53 381.58 -9.60 -43.13 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.71 Total: 5.95 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -3.14 Total: -6.80 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.59 Total: -48.66 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.12 Total: -15.13 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.53 -9.60 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064348883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.890 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds