Wall clock time and date at job start Tue Mar 31 2020 17:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46905 * 109.47276 * 2 1 4 4 C 1.46895 * 110.99970 * 65.17582 * 3 2 1 5 5 C 1.50703 * 109.47046 * 66.04997 * 4 3 2 6 6 O 1.21281 * 119.99763 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00308 * 180.02562 * 5 4 3 8 8 C 1.46493 * 120.00175 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47307 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00121 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00509 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99715 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00152 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46838 * 60.00919 * 13 11 9 15 15 H 1.48503 * 109.46740 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47336 * 300.00408 * 13 11 9 17 17 C 1.46903 * 110.99528 * 301.22561 * 3 2 1 18 18 H 1.08997 * 109.47275 * 66.95523 * 17 3 2 19 19 C 1.52997 * 109.46559 * 186.95352 * 17 3 2 20 20 C 1.50697 * 109.47500 * 306.94999 * 17 3 2 21 21 C 1.33995 * 124.92540 * 133.88602 * 20 17 3 22 22 C 1.46778 * 106.18747 * 179.90157 * 21 20 17 23 23 C 1.39409 * 134.36822 * 180.11877 * 22 21 20 24 24 C 1.36744 * 119.71436 * 180.26914 * 23 22 21 25 25 C 1.38740 * 120.41604 * 359.97438 * 24 23 22 26 26 C 1.37850 * 120.68806 * 0.02562 * 25 24 23 27 27 C 1.38943 * 119.81563 * 359.97438 * 26 25 24 28 28 O 1.34458 * 124.92393 * 314.20064 * 20 17 3 29 29 H 1.08999 * 109.47462 * 176.50493 * 1 2 3 30 30 H 1.09004 * 109.47055 * 296.50548 * 1 2 3 31 31 H 1.09006 * 109.47453 * 56.50074 * 1 2 3 32 32 H 1.09000 * 109.46681 * 119.99935 * 2 1 3 33 33 H 1.09000 * 109.47240 * 240.00179 * 2 1 3 34 34 H 1.09001 * 109.47439 * 186.04837 * 4 3 2 35 35 H 1.08999 * 109.47419 * 306.04984 * 4 3 2 36 36 H 0.97002 * 119.99966 * 359.97438 * 7 5 4 37 37 H 1.08997 * 109.47339 * 299.99177 * 8 7 5 38 38 H 1.09003 * 109.47768 * 59.99561 * 8 7 5 39 39 H 0.96998 * 120.00300 * 179.97438 * 12 11 9 40 40 H 1.09008 * 109.47053 * 179.97438 * 19 17 3 41 41 H 1.09004 * 109.47798 * 299.99792 * 19 17 3 42 42 H 1.08997 * 109.47187 * 60.00117 * 19 17 3 43 43 H 1.08003 * 126.90282 * 0.03225 * 21 20 17 44 44 H 1.07995 * 120.14650 * 0.28810 * 23 22 21 45 45 H 1.07994 * 119.78836 * 180.02562 * 24 23 22 46 46 H 1.08002 * 119.65809 * 179.97438 * 25 24 23 47 47 H 1.07994 * 120.09061 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6523 2.0733 1.2447 5 6 2.3765 1.4370 2.4031 6 8 3.1246 0.5020 2.2107 7 7 2.1921 1.9064 3.6529 8 6 2.8957 1.2875 4.7790 9 6 2.5190 1.9936 6.0559 10 1 1.8246 2.8204 6.0312 11 6 3.0600 1.5834 7.2560 12 7 3.9052 0.5763 7.2862 13 14 2.5935 2.4592 8.8387 14 1 1.1277 2.3512 9.0506 15 1 3.3066 1.8317 9.9802 16 1 2.9759 3.8910 8.7434 17 6 1.5248 2.1183 -1.1728 18 1 0.4444 2.2400 -1.0959 19 6 2.1903 3.4947 -1.2317 20 6 1.8556 1.3465 -2.4242 21 6 1.0013 1.1127 -3.4296 22 6 1.7460 0.3347 -4.4268 23 6 1.4328 -0.2081 -5.6722 24 6 2.3828 -0.9050 -6.3661 25 6 3.6549 -1.0743 -5.8387 26 6 3.9828 -0.5449 -4.6089 27 6 3.0323 0.1667 -3.8874 28 8 3.0491 0.7876 -2.6910 29 1 -0.3634 -1.0257 -0.0626 30 1 -0.3633 0.4586 0.9197 31 1 -0.3634 0.5672 -0.8570 32 1 1.8932 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.9318 3.1245 1.1747 35 1 0.5765 1.9929 1.4004 36 1 1.5935 2.6540 3.8068 37 1 2.6160 0.2363 4.8487 38 1 3.9716 1.3677 4.6237 39 1 4.2861 0.2880 8.1304 40 1 1.8234 4.0387 -2.1022 41 1 1.9511 4.0531 -0.3266 42 1 3.2707 3.3729 -1.3086 43 1 -0.0278 1.4341 -3.4943 44 1 0.4443 -0.0784 -6.0872 45 1 2.1417 -1.3256 -7.3311 46 1 4.3957 -1.6273 -6.3972 47 1 4.9761 -0.6821 -4.2078 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064348883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:55 Heat of formation + Delta-G solvation = -21.212227 kcal Electronic energy + Delta-G solvation = -27881.190744 eV Core-core repulsion = 24029.699142 eV Total energy + Delta-G solvation = -3851.491603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.48624 -40.92081 -39.16765 -38.42788 -36.08583 -34.34137 -34.14023 -33.01042 -31.51378 -31.31796 -29.70869 -29.07390 -27.53817 -24.91535 -24.48499 -23.89811 -23.15708 -22.35828 -21.44796 -20.72934 -18.88192 -18.27604 -18.07208 -17.37658 -17.29073 -17.06420 -16.97101 -16.57198 -16.10961 -15.97440 -15.68998 -15.18238 -14.96235 -14.77932 -14.44882 -14.09019 -14.02102 -14.00248 -13.92220 -13.72087 -13.31612 -13.19296 -13.04936 -12.93876 -12.81580 -12.67520 -12.64745 -12.53890 -12.23680 -12.09985 -11.82865 -11.70380 -11.50062 -11.06655 -10.78191 -10.63663 -9.79389 -9.56693 -9.28182 -9.09649 -8.28307 -6.45201 -0.04279 0.42117 1.34611 1.43196 1.47551 1.55655 1.78006 1.82306 2.26177 2.44780 2.78956 2.98114 3.06314 3.31471 3.73251 3.90756 3.97398 3.99447 4.08106 4.13097 4.16017 4.26592 4.29383 4.30048 4.39721 4.43467 4.45985 4.55299 4.71771 4.75607 4.87870 4.95051 4.96093 5.02106 5.12629 5.19747 5.25292 5.26840 5.30177 5.36532 5.48924 5.50702 5.51977 5.71573 5.76460 5.85604 5.91179 6.02149 6.31409 6.66294 6.97574 7.24596 7.56714 8.83658 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.028165 B = 0.002165 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.913889 B =12929.439367 C =13242.444779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 N -0.533 5.533 4 C 0.042 3.958 5 C 0.495 3.505 6 O -0.586 6.586 7 N -0.709 5.709 8 C 0.270 3.730 9 C -0.555 4.555 10 H 0.086 0.914 11 C 0.001 3.999 12 N -0.932 5.932 13 Si 0.986 3.014 14 H -0.261 1.261 15 H -0.287 1.287 16 H -0.261 1.261 17 C 0.153 3.847 18 H 0.108 0.892 19 C -0.147 4.147 20 C 0.043 3.957 21 C -0.206 4.206 22 C -0.148 4.148 23 C -0.079 4.079 24 C -0.137 4.137 25 C -0.092 4.092 26 C -0.130 4.130 27 C 0.016 3.984 28 O -0.205 6.205 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.134 0.866 35 H 0.097 0.903 36 H 0.409 0.591 37 H -0.016 1.016 38 H -0.017 1.017 39 H 0.268 0.732 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.184 0.816 44 H 0.150 0.850 45 H 0.160 0.840 46 H 0.162 0.838 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.797 4.294 -27.790 30.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.077 4.077 3 N -0.258 5.258 4 C -0.088 4.088 5 C 0.282 3.718 6 O -0.467 6.467 7 N -0.360 5.360 8 C 0.147 3.853 9 C -0.593 4.593 10 H 0.104 0.896 11 C -0.198 4.198 12 N -0.571 5.571 13 Si 0.809 3.191 14 H -0.185 1.185 15 H -0.213 1.213 16 H -0.186 1.186 17 C 0.046 3.954 18 H 0.125 0.875 19 C -0.205 4.205 20 C -0.005 4.005 21 C -0.225 4.225 22 C -0.149 4.149 23 C -0.097 4.097 24 C -0.154 4.154 25 C -0.110 4.110 26 C -0.148 4.148 27 C -0.031 4.031 28 O -0.107 6.107 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.152 0.848 35 H 0.115 0.885 36 H 0.245 0.755 37 H 0.002 0.998 38 H 0.001 0.999 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.202 0.798 44 H 0.168 0.832 45 H 0.178 0.822 46 H 0.179 0.821 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.397 3.530 -27.650 29.416 hybrid contribution -0.502 0.023 1.296 1.390 sum -9.899 3.553 -26.354 28.376 Atomic orbital electron populations 1.22372 0.95845 1.03349 1.02598 1.22100 0.94261 0.89490 1.01817 1.61822 1.60828 1.02247 1.00853 1.22074 0.99608 1.00237 0.86885 1.21309 0.82240 0.83508 0.84759 1.90631 1.39888 1.30898 1.85247 1.46151 1.47159 1.36221 1.06474 1.18465 0.90532 0.92204 0.84106 1.21606 1.28337 1.17808 0.91538 0.89590 1.26108 0.94370 0.95664 1.03703 1.70144 1.30818 1.27998 1.28124 0.85193 0.78813 0.78588 0.76530 1.18517 1.21293 1.18577 1.20535 0.99688 0.92303 0.82890 0.87451 1.21973 1.00900 0.93400 1.04190 1.22421 0.82763 0.97573 0.97723 1.22492 1.01458 1.05039 0.93515 1.20261 0.93564 1.03227 0.97826 1.20651 1.01125 0.96228 0.91690 1.21202 0.92893 0.99801 1.01551 1.21330 0.98026 0.98169 0.93437 1.20307 0.98616 1.00253 0.95656 1.20205 0.97549 0.99544 0.85773 1.84057 1.35089 1.58201 1.33337 0.91680 0.92016 0.90480 0.92138 0.92525 0.84835 0.88533 0.75547 0.99781 0.99914 0.92323 0.89528 0.89453 0.93440 0.79844 0.83247 0.82240 0.82058 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.01 9.24 71.98 0.66 -3.35 16 2 C 0.05 1.55 5.32 86.30 0.46 2.01 16 3 N -0.53 -15.03 4.31 -879.93 -3.79 -18.82 16 4 C 0.04 1.10 5.13 85.56 0.44 1.54 16 5 C 0.49 19.87 7.51 87.66 0.66 20.52 16 6 O -0.59 -29.94 14.34 -3.03 -0.04 -29.98 16 7 N -0.71 -29.71 5.55 -466.80 -2.59 -32.30 16 8 C 0.27 14.98 5.43 85.63 0.46 15.44 16 9 C -0.56 -30.21 9.28 25.60 0.24 -29.98 16 10 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 11 C 0.00 0.05 5.46 84.66 0.46 0.52 16 12 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 13 Si 0.99 42.35 29.54 68.60 2.03 44.37 16 14 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 15 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 17 C 0.15 3.12 1.91 44.17 0.08 3.21 16 18 H 0.11 1.53 6.56 -2.39 -0.02 1.52 16 19 C -0.15 -2.58 9.05 71.98 0.65 -1.93 16 20 C 0.04 1.03 4.27 24.72 0.11 1.13 16 21 C -0.21 -4.10 10.98 23.54 0.26 -3.84 16 22 C -0.15 -3.30 6.40 -20.22 -0.13 -3.43 16 23 C -0.08 -1.30 10.05 22.20 0.22 -1.08 16 24 C -0.14 -1.88 9.98 22.04 0.22 -1.66 16 25 C -0.09 -1.43 10.01 22.30 0.22 -1.21 16 26 C -0.13 -2.87 10.07 22.35 0.23 -2.64 16 27 C 0.02 0.44 7.42 22.99 0.17 0.61 16 28 O -0.21 -6.25 10.18 -8.97 -0.09 -6.34 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.31 6.57 -2.38 -0.02 1.29 16 31 H 0.08 1.31 6.26 -2.38 -0.01 1.30 16 32 H 0.06 2.36 5.81 -2.39 -0.01 2.35 16 33 H 0.06 1.85 6.65 -2.39 -0.02 1.83 16 34 H 0.13 2.72 5.95 -2.39 -0.01 2.70 16 35 H 0.10 1.95 6.25 -2.39 -0.01 1.93 16 36 H 0.41 13.70 8.32 -92.71 -0.77 12.92 16 37 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 39 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 40 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.09 1.21 6.27 -2.39 -0.01 1.20 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 44 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 46 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.13 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -80.30 381.58 1.43 -78.87 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.22 Total: 24.99 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 5.42 Total: -4.12 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -6.10 Total: -107.79 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.13 Total: -36.32 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -80.30 1.43 -78.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064348883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.657 kcal (2) G-P(sol) polarization free energy of solvation -80.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds