Wall clock time and date at job start Tue Mar 31 2020 15:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46980 * 2 1 4 4 C 1.50705 * 109.46883 * 119.99960 * 2 1 3 5 5 H 1.07996 * 120.00032 * 119.99900 * 4 2 1 6 6 C 1.37878 * 119.99774 * 299.99865 * 4 2 1 7 7 N 1.31512 * 120.00227 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99718 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46949 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46965 * 119.99630 * 8 6 4 11 11 H 1.48494 * 109.46861 * 239.99912 * 8 6 4 12 12 N 1.46501 * 109.46845 * 239.99710 * 2 1 3 13 13 C 1.34773 * 119.99958 * 85.00457 * 12 2 1 14 14 O 1.21282 * 119.99942 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00039 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.46685 * 299.99411 * 15 13 12 17 17 C 1.50699 * 109.47097 * 59.99629 * 15 13 12 18 18 C 1.38236 * 119.99871 * 180.14465 * 17 15 13 19 19 C 1.38235 * 120.00092 * 179.79014 * 18 17 15 20 20 C 1.38235 * 119.99559 * 0.43815 * 19 18 17 21 21 C 1.38229 * 120.00091 * 359.81930 * 20 19 18 22 22 C 1.38230 * 120.00616 * 359.97273 * 21 20 19 23 23 N 1.46503 * 109.47028 * 179.97438 * 15 13 12 24 24 C 1.45758 * 117.94270 * 114.46697 * 23 15 13 25 25 C 1.53101 * 110.38067 * 160.74349 * 24 23 15 26 26 C 1.53347 * 108.53048 * 51.11681 * 25 24 23 27 27 C 1.53070 * 108.42525 * 292.30643 * 26 25 24 28 28 C 1.33348 * 117.94807 * 294.73178 * 23 15 13 29 29 O 1.21284 * 118.24587 * 2.19624 * 28 23 15 30 30 H 1.08999 * 109.47247 * 59.99799 * 1 2 3 31 31 H 1.09004 * 109.47039 * 300.00362 * 1 2 3 32 32 H 1.08997 * 109.47661 * 180.02562 * 1 2 3 33 33 H 0.96993 * 119.99959 * 180.02562 * 7 6 4 34 34 H 0.97001 * 120.00335 * 265.00225 * 12 2 1 35 35 H 1.08004 * 119.99597 * 359.97438 * 18 17 15 36 36 H 1.07999 * 119.99886 * 180.27826 * 19 18 17 37 37 H 1.08002 * 119.99397 * 179.83334 * 20 19 18 38 38 H 1.08010 * 119.99858 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00612 * 180.02562 * 22 21 20 40 40 H 1.09003 * 109.30086 * 281.23591 * 24 23 15 41 41 H 1.08996 * 109.30255 * 40.61653 * 24 23 15 42 42 H 1.08995 * 109.81050 * 291.32244 * 25 24 23 43 43 H 1.09008 * 109.54131 * 170.74882 * 25 24 23 44 44 H 1.08999 * 109.67045 * 172.57292 * 26 25 24 45 45 H 1.09002 * 109.66968 * 52.04206 * 26 25 24 46 46 H 1.08999 * 109.39943 * 288.77327 * 27 26 25 47 47 H 1.08993 * 109.32866 * 168.98299 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1472 -2.2863 3.6038 10 1 3.1472 -0.1857 4.8161 11 1 1.1677 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8583 1.1583 -2.4117 15 6 2.6488 -0.7290 -3.5877 16 1 3.6479 -1.1215 -3.3986 17 6 1.7184 -1.8651 -3.9262 18 6 1.9774 -2.6677 -5.0215 19 6 1.1263 -3.7126 -5.3294 20 6 0.0113 -3.9492 -4.5473 21 6 -0.2505 -3.1434 -3.4551 22 6 0.6028 -2.1012 -3.1446 23 7 2.6977 0.2123 -4.7093 24 6 4.0034 0.5462 -5.2643 25 6 3.8513 1.1284 -6.6721 26 6 2.8175 2.2599 -6.6225 27 6 1.4457 1.6491 -6.3258 28 6 1.5453 0.7139 -5.1549 29 8 0.5228 0.3976 -4.5844 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.7087 1.1613 3.4843 34 1 2.2490 -1.6319 -1.1526 35 1 2.8463 -2.4802 -5.6349 36 1 1.3311 -4.3424 -6.1825 37 1 -0.6551 -4.7639 -4.7895 38 1 -1.1219 -3.3281 -2.8443 39 1 0.3985 -1.4718 -2.2911 40 1 4.4930 1.2762 -4.6196 41 1 4.6153 -0.3545 -5.3130 42 1 3.5117 0.3524 -7.3581 43 1 4.8099 1.5234 -7.0089 44 1 2.7901 2.7743 -7.5831 45 1 3.0832 2.9654 -5.8353 46 1 1.0975 1.0989 -7.2000 47 1 0.7387 2.4455 -6.0939 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066623172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:07 Heat of formation + Delta-G solvation = -36.757218 kcal Electronic energy + Delta-G solvation = -29848.301141 eV Core-core repulsion = 25996.135457 eV Total energy + Delta-G solvation = -3852.165684 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.97983 -38.90212 -38.13069 -36.27026 -34.87773 -34.19580 -32.48323 -31.15165 -30.63885 -29.55195 -28.88664 -26.68407 -25.21845 -24.35630 -22.81138 -22.43395 -21.71048 -20.66002 -19.46253 -18.52968 -17.31033 -16.93747 -16.74284 -15.89865 -15.77315 -15.16636 -15.08043 -14.68018 -14.53606 -14.29020 -14.23230 -13.85075 -13.68411 -13.58649 -13.14703 -13.08018 -12.79840 -12.43606 -12.38033 -12.07101 -11.74915 -11.59960 -11.41601 -11.14425 -11.11850 -11.07432 -11.00540 -10.86236 -10.79295 -10.58256 -10.26733 -10.18360 -9.51466 -9.23078 -8.98976 -8.69847 -8.53855 -8.46745 -8.33109 -7.79838 -6.08806 -4.18045 1.47073 1.64878 2.93979 3.12275 3.25429 3.33189 3.35963 3.42030 4.04396 4.13265 4.40554 4.55361 4.60702 4.62117 4.77421 4.89102 5.04270 5.13240 5.20842 5.23707 5.28179 5.29689 5.38392 5.42413 5.54335 5.58015 5.68096 5.73307 5.75154 5.81987 5.87273 6.05412 6.13187 6.27333 6.45208 6.61003 6.76594 6.82235 6.89053 7.05776 7.19419 7.23705 7.51924 7.61008 7.67170 7.73696 7.96676 8.19840 8.51927 8.70919 8.82890 9.18095 9.49602 10.97007 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.004147 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.293743 B = 6749.698957 C = 7880.760734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.267 3.733 3 H 0.046 0.954 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.711 5.711 13 C 0.504 3.496 14 O -0.532 6.532 15 C 0.163 3.837 16 H 0.113 0.887 17 C -0.082 4.082 18 C -0.107 4.107 19 C -0.131 4.131 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.084 4.084 23 N -0.586 5.586 24 C 0.113 3.887 25 C -0.132 4.132 26 C -0.124 4.124 27 C -0.130 4.130 28 C 0.522 3.478 29 O -0.522 6.522 30 H 0.017 0.983 31 H 0.089 0.911 32 H 0.026 0.974 33 H 0.263 0.737 34 H 0.388 0.612 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.143 0.857 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.640 -5.143 -20.134 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.166 3.834 3 H 0.064 0.936 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.360 5.360 13 C 0.286 3.714 14 O -0.408 6.408 15 C 0.056 3.944 16 H 0.131 0.869 17 C -0.083 4.083 18 C -0.125 4.125 19 C -0.149 4.149 20 C -0.137 4.137 21 C -0.137 4.137 22 C -0.103 4.103 23 N -0.320 5.320 24 C -0.010 4.010 25 C -0.169 4.169 26 C -0.162 4.162 27 C -0.169 4.169 28 C 0.309 3.691 29 O -0.396 6.396 30 H 0.036 0.964 31 H 0.108 0.892 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.221 0.779 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.160 0.840 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.111 0.889 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.795 -4.269 -19.728 20.747 hybrid contribution 0.484 -0.855 0.880 1.319 sum 5.279 -5.124 -18.849 20.233 Atomic orbital electron populations 1.22083 0.98439 0.99062 1.00999 1.18712 0.91023 0.93830 0.79864 0.93570 1.21260 1.32302 1.13131 0.90311 0.92048 1.24884 0.94837 0.94948 0.99018 1.69920 1.35931 1.22511 1.23689 0.86413 0.78604 0.79525 0.82668 1.19732 1.20940 1.20903 1.46647 1.65473 1.13489 1.10437 1.20279 0.78969 0.87703 0.84416 1.90648 1.49649 1.15956 1.84551 1.19900 0.99698 0.87922 0.86922 0.86943 1.19575 0.96608 0.95312 0.96800 1.20774 0.99636 0.95416 0.96701 1.20954 0.95620 0.98306 1.00002 1.21113 0.97431 0.99540 0.95646 1.21161 0.99558 0.95598 0.97429 1.21662 0.92487 0.96388 0.99723 1.47022 1.06674 1.45305 1.32988 1.21480 0.84300 1.00548 0.94676 1.21882 1.00420 0.98641 0.95996 1.21661 0.93898 0.97976 1.02639 1.21610 0.99232 0.99162 0.96938 1.19909 0.82973 0.81075 0.85099 1.90764 1.33762 1.58489 1.56606 0.96422 0.89239 0.95515 0.92688 0.77879 0.86769 0.86559 0.86549 0.86132 0.83966 0.91531 0.90863 0.91017 0.89887 0.90854 0.90834 0.88933 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 8.71 37.16 0.32 -3.49 16 2 C 0.27 6.95 2.56 -69.08 -0.18 6.77 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.23 11.32 55.43 0.63 -24.60 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.71 -15.28 3.36 -54.93 -0.18 -15.47 16 13 C 0.50 10.56 5.31 -10.99 -0.06 10.50 16 14 O -0.53 -13.34 14.59 -12.85 -0.19 -13.53 16 15 C 0.16 2.60 2.72 -70.23 -0.19 2.41 16 16 H 0.11 1.45 7.76 -51.93 -0.40 1.05 16 17 C -0.08 -1.28 3.83 -104.62 -0.40 -1.68 16 18 C -0.11 -1.39 9.58 -39.58 -0.38 -1.77 16 19 C -0.13 -1.60 10.05 -39.58 -0.40 -1.99 16 20 C -0.12 -1.54 10.05 -39.59 -0.40 -1.94 16 21 C -0.12 -1.82 10.05 -39.59 -0.40 -2.22 16 22 C -0.08 -1.47 7.59 -39.58 -0.30 -1.77 16 23 N -0.59 -8.43 2.41 -169.91 -0.41 -8.84 16 24 C 0.11 1.12 6.28 -4.39 -0.03 1.09 16 25 C -0.13 -0.99 6.03 -26.50 -0.16 -1.15 16 26 C -0.12 -1.10 6.03 -26.52 -0.16 -1.26 16 27 C -0.13 -1.54 6.03 -28.10 -0.17 -1.70 16 28 C 0.52 8.56 6.24 -11.87 -0.07 8.48 16 29 O -0.52 -10.97 13.38 -12.85 -0.17 -11.14 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.39 7.44 7.90 -40.82 -0.32 7.12 16 35 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 39 H 0.14 2.91 4.84 -52.49 -0.25 2.65 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.56 7.98 -51.93 -0.41 0.14 16 42 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 43 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 374.64 15.07 5.65 5.65 Total: -1.00 -34.59 374.64 -10.20 -44.79 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -7.14 Total: 9.88 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -3.36 Total: -2.54 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.03 Total: -48.91 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.36 Total: -24.67 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.59 -10.20 -44.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066623172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.034 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds