Wall clock time and date at job start Tue Mar 31 2020 15:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46980 * 2 1 4 4 C 1.50705 * 109.46883 * 119.99960 * 2 1 3 5 5 H 1.07996 * 120.00032 * 119.99900 * 4 2 1 6 6 C 1.37878 * 119.99774 * 299.99865 * 4 2 1 7 7 N 1.31512 * 120.00227 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99718 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46949 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46965 * 119.99630 * 8 6 4 11 11 H 1.48494 * 109.46861 * 239.99912 * 8 6 4 12 12 N 1.46501 * 109.46845 * 239.99710 * 2 1 3 13 13 C 1.34773 * 119.99958 * 85.00457 * 12 2 1 14 14 O 1.21282 * 119.99942 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00039 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.46685 * 299.99411 * 15 13 12 17 17 C 1.50699 * 109.47097 * 59.99629 * 15 13 12 18 18 C 1.38236 * 119.99871 * 180.14465 * 17 15 13 19 19 C 1.38235 * 120.00092 * 179.79014 * 18 17 15 20 20 C 1.38235 * 119.99559 * 0.43815 * 19 18 17 21 21 C 1.38229 * 120.00091 * 359.81930 * 20 19 18 22 22 C 1.38230 * 120.00616 * 359.97273 * 21 20 19 23 23 N 1.46503 * 109.47028 * 179.97438 * 15 13 12 24 24 C 1.45758 * 117.94270 * 114.46697 * 23 15 13 25 25 C 1.53101 * 110.38067 * 160.74349 * 24 23 15 26 26 C 1.53347 * 108.53048 * 51.11681 * 25 24 23 27 27 C 1.53070 * 108.42525 * 292.30643 * 26 25 24 28 28 C 1.33348 * 117.94807 * 294.73178 * 23 15 13 29 29 O 1.21284 * 118.24587 * 2.19624 * 28 23 15 30 30 H 1.08999 * 109.47247 * 59.99799 * 1 2 3 31 31 H 1.09004 * 109.47039 * 300.00362 * 1 2 3 32 32 H 1.08997 * 109.47661 * 180.02562 * 1 2 3 33 33 H 0.96993 * 119.99959 * 180.02562 * 7 6 4 34 34 H 0.97001 * 120.00335 * 265.00225 * 12 2 1 35 35 H 1.08004 * 119.99597 * 359.97438 * 18 17 15 36 36 H 1.07999 * 119.99886 * 180.27826 * 19 18 17 37 37 H 1.08002 * 119.99397 * 179.83334 * 20 19 18 38 38 H 1.08010 * 119.99858 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00612 * 180.02562 * 22 21 20 40 40 H 1.09003 * 109.30086 * 281.23591 * 24 23 15 41 41 H 1.08996 * 109.30255 * 40.61653 * 24 23 15 42 42 H 1.08995 * 109.81050 * 291.32244 * 25 24 23 43 43 H 1.09008 * 109.54131 * 170.74882 * 25 24 23 44 44 H 1.08999 * 109.67045 * 172.57292 * 26 25 24 45 45 H 1.09002 * 109.66968 * 52.04206 * 26 25 24 46 46 H 1.08999 * 109.39943 * 288.77327 * 27 26 25 47 47 H 1.08993 * 109.32866 * 168.98299 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1472 -2.2863 3.6038 10 1 3.1472 -0.1857 4.8161 11 1 1.1677 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8583 1.1583 -2.4117 15 6 2.6488 -0.7290 -3.5877 16 1 3.6479 -1.1215 -3.3986 17 6 1.7184 -1.8651 -3.9262 18 6 1.9774 -2.6677 -5.0215 19 6 1.1263 -3.7126 -5.3294 20 6 0.0113 -3.9492 -4.5473 21 6 -0.2505 -3.1434 -3.4551 22 6 0.6028 -2.1012 -3.1446 23 7 2.6977 0.2123 -4.7093 24 6 4.0034 0.5462 -5.2643 25 6 3.8513 1.1284 -6.6721 26 6 2.8175 2.2599 -6.6225 27 6 1.4457 1.6491 -6.3258 28 6 1.5453 0.7139 -5.1549 29 8 0.5228 0.3976 -4.5844 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.7087 1.1613 3.4843 34 1 2.2490 -1.6319 -1.1526 35 1 2.8463 -2.4802 -5.6349 36 1 1.3311 -4.3424 -6.1825 37 1 -0.6551 -4.7639 -4.7895 38 1 -1.1219 -3.3281 -2.8443 39 1 0.3985 -1.4718 -2.2911 40 1 4.4930 1.2762 -4.6196 41 1 4.6153 -0.3545 -5.3130 42 1 3.5117 0.3524 -7.3581 43 1 4.8099 1.5234 -7.0089 44 1 2.7901 2.7743 -7.5831 45 1 3.0832 2.9654 -5.8353 46 1 1.0975 1.0989 -7.2000 47 1 0.7387 2.4455 -6.0939 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066623172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:06 Heat of formation + Delta-G solvation = -57.792211 kcal Electronic energy + Delta-G solvation = -29849.213287 eV Core-core repulsion = 25996.135457 eV Total energy + Delta-G solvation = -3853.077830 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.23410 -40.19823 -39.53154 -37.37052 -36.76840 -35.39166 -34.39802 -32.36502 -31.73126 -30.76216 -30.46142 -27.96061 -27.38993 -25.24707 -24.12747 -23.43562 -23.03211 -22.13497 -21.15908 -19.71868 -18.82326 -18.17779 -17.92182 -17.61427 -17.06390 -16.80662 -16.29440 -16.06067 -15.88073 -15.53060 -15.25411 -15.13947 -14.96982 -14.59748 -14.40823 -14.30023 -14.16009 -14.11020 -13.81842 -13.51896 -13.29398 -13.00773 -12.91282 -12.78568 -12.63394 -12.33810 -12.25578 -12.14041 -11.99605 -11.91293 -11.81356 -11.76635 -11.13571 -10.88506 -10.66476 -10.62627 -9.80385 -9.73018 -9.65074 -9.50371 -8.19569 -6.38027 0.39952 0.56157 1.42720 1.43109 1.56060 1.70564 1.79723 2.03688 2.35426 2.65056 2.95659 3.10428 3.61630 3.75370 3.83216 3.88625 3.92349 3.99062 4.04846 4.19371 4.22602 4.32829 4.50949 4.58720 4.62999 4.67545 4.68314 4.76188 4.85168 4.88252 4.94865 5.03475 5.08421 5.10625 5.13500 5.18442 5.35360 5.39177 5.42623 5.57355 5.57941 5.61252 5.67034 5.70361 5.86047 6.05000 6.14876 6.56547 6.69747 6.90833 7.28963 7.35259 7.52937 8.87183 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.004147 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.293743 B = 6749.698957 C = 7880.760734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.278 3.722 3 H -0.006 1.006 4 C -0.544 4.544 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.976 3.024 9 H -0.258 1.258 10 H -0.282 1.282 11 H -0.279 1.279 12 N -0.704 5.704 13 C 0.499 3.501 14 O -0.583 6.583 15 C 0.170 3.830 16 H 0.149 0.851 17 C -0.090 4.090 18 C -0.101 4.101 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.138 4.138 22 C -0.117 4.117 23 N -0.582 5.582 24 C 0.099 3.901 25 C -0.122 4.122 26 C -0.120 4.120 27 C -0.127 4.127 28 C 0.507 3.493 29 O -0.581 6.581 30 H -0.002 1.002 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.265 0.735 34 H 0.401 0.599 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.056 0.944 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.053 0.947 46 H 0.116 0.884 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.274 -7.937 -22.974 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.174 3.826 3 H 0.012 0.988 4 C -0.582 4.582 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.800 3.200 9 H -0.181 1.181 10 H -0.207 1.207 11 H -0.205 1.205 12 N -0.354 5.354 13 C 0.285 3.715 14 O -0.463 6.463 15 C 0.062 3.938 16 H 0.166 0.834 17 C -0.091 4.091 18 C -0.119 4.119 19 C -0.140 4.140 20 C -0.135 4.135 21 C -0.156 4.156 22 C -0.136 4.136 23 N -0.314 5.314 24 C -0.022 4.022 25 C -0.159 4.159 26 C -0.158 4.158 27 C -0.166 4.166 28 C 0.297 3.703 29 O -0.460 6.460 30 H 0.018 0.982 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.165 0.835 36 H 0.174 0.826 37 H 0.163 0.837 38 H 0.136 0.864 39 H 0.118 0.882 40 H 0.074 0.926 41 H 0.126 0.874 42 H 0.106 0.894 43 H 0.132 0.868 44 H 0.122 0.878 45 H 0.072 0.928 46 H 0.134 0.866 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.487 -7.092 -22.609 24.850 hybrid contribution -0.381 0.062 1.717 1.760 sum 7.105 -7.030 -20.892 23.160 Atomic orbital electron populations 1.21852 0.98911 0.98947 0.98849 1.18255 0.90567 0.91716 0.82048 0.98766 1.21545 1.32568 1.13495 0.90610 0.90758 1.25853 0.94787 0.95549 1.02455 1.70077 1.37051 1.24093 1.24567 0.85241 0.78093 0.78542 0.78123 1.18143 1.20748 1.20502 1.46363 1.65461 1.13879 1.09719 1.21287 0.77501 0.87231 0.85485 1.90611 1.51777 1.18469 1.85408 1.19879 1.01176 0.87933 0.84806 0.83405 1.19544 0.96070 0.95672 0.97830 1.21091 1.00703 0.94652 0.95472 1.21433 0.94340 0.97861 1.00332 1.21454 0.98217 0.99446 0.94395 1.21276 0.99469 0.95972 0.98880 1.21440 0.94792 0.97465 0.99929 1.47222 1.07976 1.44358 1.31860 1.21903 0.82233 1.02156 0.95875 1.21907 1.01343 0.98231 0.94426 1.21678 0.92365 0.98328 1.03403 1.21650 1.01118 0.98094 0.95766 1.20815 0.82718 0.81015 0.85769 1.90744 1.35964 1.60561 1.58750 0.98245 0.91447 0.94436 0.92554 0.76363 0.83489 0.82619 0.83670 0.86352 0.88172 0.92600 0.87429 0.89376 0.86831 0.87843 0.92847 0.86592 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.11 8.71 71.98 0.63 -6.48 16 2 C 0.28 15.42 2.56 44.25 0.11 15.54 16 3 H -0.01 -0.36 7.58 -2.39 -0.02 -0.38 16 4 C -0.54 -29.97 8.73 25.60 0.22 -29.75 16 5 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -54.74 11.32 21.45 0.24 -54.50 16 8 Si 0.98 43.06 29.54 68.60 2.03 45.09 16 9 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 12 N -0.70 -32.09 3.36 -446.09 -1.50 -33.59 16 13 C 0.50 22.14 5.31 87.66 0.47 22.61 16 14 O -0.58 -31.60 14.59 14.56 0.21 -31.38 16 15 C 0.17 5.35 2.72 43.50 0.12 5.47 16 16 H 0.15 3.50 7.76 -2.39 -0.02 3.48 16 17 C -0.09 -2.75 3.83 -19.87 -0.08 -2.83 16 18 C -0.10 -2.29 9.58 22.27 0.21 -2.07 16 19 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 20 C -0.12 -2.75 10.05 22.27 0.22 -2.53 16 21 C -0.14 -4.26 10.05 22.27 0.22 -4.04 16 22 C -0.12 -4.27 7.59 22.27 0.17 -4.10 16 23 N -0.58 -16.19 2.41 -810.64 -1.95 -18.14 16 24 C 0.10 1.68 6.28 86.55 0.54 2.22 16 25 C -0.12 -1.32 6.03 30.74 0.19 -1.13 16 26 C -0.12 -1.86 6.03 30.73 0.19 -1.67 16 27 C -0.13 -2.92 6.03 29.71 0.18 -2.74 16 28 C 0.51 16.83 6.24 87.72 0.55 17.38 16 29 O -0.58 -25.84 13.38 14.56 0.19 -25.65 16 30 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.07 4.05 6.07 -2.39 -0.01 4.04 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.40 16.01 7.90 -92.71 -0.73 15.28 16 35 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 36 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.12 3.50 8.06 -2.91 -0.02 3.48 16 39 H 0.10 4.45 4.84 -2.91 -0.01 4.44 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.11 1.11 7.98 -2.39 -0.02 1.09 16 42 H 0.09 0.74 8.12 -2.39 -0.02 0.73 16 43 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 44 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.05 1.04 8.12 -2.39 -0.02 1.02 16 46 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -83.96 374.64 4.08 -79.88 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: 0.24 Total: 33.48 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 4.61 Total: 4.81 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -3.21 Total: -106.23 kcal Atomic # 8 Polarization: -57.44 SS G_CDS: 0.41 Total: -57.03 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -83.96 4.08 -79.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066623172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.085 kcal (2) G-P(sol) polarization free energy of solvation -83.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds