Wall clock time and date at job start Tue Mar 31 2020 15:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47552 * 2 1 4 4 C 1.50707 * 109.46544 * 119.99350 * 2 1 3 5 5 H 1.08001 * 119.99522 * 120.00085 * 4 2 1 6 6 C 1.37871 * 120.00087 * 299.99911 * 4 2 1 7 7 N 1.31508 * 120.00530 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99817 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47241 * 60.00004 * 8 6 4 10 10 H 1.48497 * 109.47207 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47350 * 299.99997 * 8 6 4 12 12 N 1.46495 * 109.47279 * 239.99272 * 2 1 3 13 13 C 1.34774 * 120.00032 * 85.00148 * 12 2 1 14 14 O 1.21279 * 119.99605 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00079 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.47148 * 31.84633 * 15 13 12 17 17 C 1.50697 * 109.47216 * 271.84355 * 15 13 12 18 18 C 1.38237 * 119.99985 * 252.71985 * 17 15 13 19 19 C 1.38234 * 120.00135 * 179.79272 * 18 17 15 20 20 C 1.38244 * 119.99727 * 0.43637 * 19 18 17 21 21 C 1.38237 * 119.99978 * 359.81434 * 20 19 18 22 22 C 1.38232 * 119.99814 * 359.97438 * 21 20 19 23 23 N 1.46504 * 109.46857 * 151.84145 * 15 13 12 24 24 C 1.45753 * 117.94560 * 38.38682 * 23 15 13 25 25 C 1.52922 * 110.48903 * 160.92412 * 24 23 15 26 26 C 1.53339 * 108.67305 * 50.75043 * 25 24 23 27 27 C 1.53073 * 108.42656 * 292.46794 * 26 25 24 28 28 C 1.33231 * 117.98404 * 218.45516 * 23 15 13 29 29 O 1.21282 * 118.15894 * 2.21511 * 28 23 15 30 30 H 1.09000 * 109.47018 * 300.00698 * 1 2 3 31 31 H 1.09001 * 109.46236 * 60.00400 * 1 2 3 32 32 H 1.08997 * 109.47276 * 180.02562 * 1 2 3 33 33 H 0.96999 * 120.00823 * 179.97438 * 7 6 4 34 34 H 0.96999 * 120.00229 * 265.00448 * 12 2 1 35 35 H 1.07997 * 119.99839 * 359.97438 * 18 17 15 36 36 H 1.07992 * 120.00517 * 180.27119 * 19 18 17 37 37 H 1.08004 * 119.99852 * 179.83722 * 20 19 18 38 38 H 1.07997 * 119.99668 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00141 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.30348 * 40.61274 * 24 23 15 41 41 H 1.09001 * 109.30290 * 281.23315 * 24 23 15 42 42 H 1.09004 * 109.60028 * 290.99236 * 25 24 23 43 43 H 1.09000 * 109.60434 * 170.50785 * 25 24 23 44 44 H 1.09003 * 109.67429 * 172.73929 * 26 25 24 45 45 H 1.08995 * 109.67891 * 52.20309 * 26 25 24 46 46 H 1.09004 * 109.40185 * 169.03116 * 27 26 25 47 47 H 1.09002 * 109.40439 * 288.86167 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3223 -1.1192 4.0081 9 1 3.8073 -1.1187 4.0080 10 1 1.8267 -0.4195 5.2205 11 1 1.8278 -2.5195 4.0085 12 7 2.0184 -0.6907 -1.1960 13 6 2.1472 -0.0185 -2.3571 14 8 1.8592 1.1583 -2.4115 15 6 2.6501 -0.7289 -3.5873 16 1 2.3340 -1.7717 -3.5594 17 6 4.1550 -0.6610 -3.6267 18 6 4.7860 0.1646 -4.5384 19 6 6.1664 0.2302 -4.5717 20 6 6.9160 -0.5367 -3.6992 21 6 6.2851 -1.3662 -2.7910 22 6 4.9046 -1.4284 -2.7548 23 7 2.1006 -0.0840 -4.7825 24 6 1.9843 1.3689 -4.7822 25 6 1.8551 1.8957 -6.2120 26 6 0.7436 1.1155 -6.9242 27 6 1.2070 -0.3324 -7.1029 28 6 1.7371 -0.8617 -5.8013 29 8 1.8417 -2.0629 -5.6702 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 0.7080 1.1612 3.4843 34 1 2.2491 -1.6319 -1.1524 35 1 4.2004 0.7605 -5.2227 36 1 6.6593 0.8784 -5.2809 37 1 7.9946 -0.4874 -3.7270 38 1 6.8707 -1.9655 -2.1097 39 1 4.4116 -2.0761 -2.0450 40 1 2.8705 1.8013 -4.3177 41 1 1.1032 1.6597 -4.2102 42 1 2.7979 1.7540 -6.7405 43 1 1.6014 2.9556 -6.1897 44 1 0.5492 1.5616 -7.8996 45 1 -0.1646 1.1384 -6.3221 46 1 0.3654 -0.9446 -7.4269 47 1 1.9937 -0.3705 -7.8565 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066623174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:15 Heat of formation + Delta-G solvation = -40.982679 kcal Electronic energy + Delta-G solvation = -29483.502421 eV Core-core repulsion = 25631.153507 eV Total energy + Delta-G solvation = -3852.348914 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15178 -39.10085 -38.44207 -36.43732 -35.02242 -34.25758 -32.54152 -31.31517 -30.71204 -29.66516 -29.09529 -26.85083 -25.28201 -24.44521 -22.75401 -22.33415 -21.99367 -20.77974 -19.62193 -18.62448 -17.46116 -17.23353 -16.67561 -16.12184 -15.59212 -15.45025 -15.26982 -14.92566 -14.70337 -14.50118 -14.27542 -14.09745 -13.63336 -13.45721 -13.30184 -13.03559 -12.96900 -12.61736 -12.45916 -12.33324 -11.84382 -11.54271 -11.40468 -11.23369 -11.18632 -11.10956 -10.97231 -10.94729 -10.92230 -10.73539 -10.34442 -10.26068 -9.72689 -9.43757 -9.10516 -8.84670 -8.64457 -8.58699 -8.32577 -8.00130 -6.15163 -4.24596 1.37176 1.48487 2.62485 2.82985 3.24287 3.25906 3.29730 3.32035 3.77566 4.11858 4.35422 4.50681 4.66280 4.66830 4.75829 4.81428 4.94508 5.05302 5.16767 5.17417 5.26371 5.30596 5.42854 5.44170 5.54840 5.58927 5.64402 5.66139 5.75066 5.84792 5.95595 5.99290 6.08897 6.20098 6.41235 6.50772 6.56789 6.66673 6.77553 6.91179 7.04369 7.09476 7.36253 7.46482 7.53519 7.64625 7.85747 8.10095 8.16376 8.55130 8.71199 8.97977 9.42617 10.90744 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012365 B = 0.004093 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.823540 B = 6838.614236 C = 8190.545124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.698 5.698 13 C 0.506 3.494 14 O -0.544 6.544 15 C 0.154 3.846 16 H 0.124 0.876 17 C -0.083 4.083 18 C -0.107 4.107 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.115 4.115 22 C -0.102 4.102 23 N -0.579 5.579 24 C 0.114 3.886 25 C -0.142 4.142 26 C -0.124 4.124 27 C -0.129 4.129 28 C 0.516 3.484 29 O -0.558 6.558 30 H 0.091 0.909 31 H 0.014 0.986 32 H 0.027 0.973 33 H 0.265 0.735 34 H 0.389 0.611 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.099 0.901 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.575 -0.031 -17.883 18.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.345 5.345 13 C 0.289 3.711 14 O -0.423 6.423 15 C 0.046 3.954 16 H 0.142 0.858 17 C -0.084 4.084 18 C -0.125 4.125 19 C -0.140 4.140 20 C -0.140 4.140 21 C -0.133 4.133 22 C -0.120 4.120 23 N -0.311 5.311 24 C -0.007 4.007 25 C -0.180 4.180 26 C -0.162 4.162 27 C -0.169 4.169 28 C 0.304 3.696 29 O -0.437 6.437 30 H 0.109 0.891 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.222 0.778 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.117 0.883 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.285 0.351 -17.682 18.458 hybrid contribution 0.436 -0.847 0.977 1.365 sum 5.721 -0.496 -16.705 17.664 Atomic orbital electron populations 1.22079 0.98347 0.99209 1.00879 1.18779 0.91017 0.93966 0.79707 0.93241 1.21156 1.32593 1.13274 0.90244 0.92081 1.24862 0.94748 0.94917 0.99021 1.69880 1.35749 1.22424 1.24037 0.86510 0.79198 0.79630 0.81792 1.20141 1.21121 1.20123 1.46555 1.64116 1.13593 1.10256 1.20159 0.78813 0.87575 0.84543 1.90634 1.51715 1.15630 1.84314 1.19891 0.90476 0.99829 0.85221 0.85843 1.19796 0.93608 0.97788 0.97226 1.21066 0.94532 0.98334 0.98600 1.21080 0.93776 0.99692 0.99492 1.21138 0.99688 0.97012 0.96190 1.21091 0.94333 0.99143 0.98718 1.20967 0.94152 0.98810 0.98108 1.47000 1.61787 1.07936 1.14360 1.21782 1.05169 0.78054 0.95733 1.22056 0.99164 1.00814 0.95976 1.21670 0.99089 0.93955 1.01487 1.21622 1.02839 0.97757 0.94680 1.20174 0.77314 0.86576 0.85505 1.90702 1.55528 1.15374 1.82089 0.89053 0.96733 0.95418 0.92495 0.77834 0.85790 0.86236 0.86243 0.85815 0.85656 0.89664 0.89231 0.91484 0.89659 0.90718 0.90894 0.88253 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.25 16 2 C 0.27 6.64 2.56 -69.08 -0.18 6.46 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -13.91 8.73 -34.44 -0.30 -14.21 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.54 11.32 55.43 0.63 -23.92 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.70 -14.36 5.07 -54.93 -0.28 -14.64 16 13 C 0.51 9.89 6.85 -10.99 -0.08 9.82 16 14 O -0.54 -11.87 12.36 5.56 0.07 -11.80 16 15 C 0.15 2.53 2.45 -70.23 -0.17 2.35 16 16 H 0.12 2.08 6.88 -51.93 -0.36 1.72 16 17 C -0.08 -1.28 5.15 -104.63 -0.54 -1.82 16 18 C -0.11 -1.50 8.59 -39.58 -0.34 -1.84 16 19 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 20 C -0.12 -1.47 10.05 -39.58 -0.40 -1.86 16 21 C -0.11 -1.49 10.05 -39.58 -0.40 -1.89 16 22 C -0.10 -1.50 9.63 -39.58 -0.38 -1.88 16 23 N -0.58 -8.53 1.94 -170.05 -0.33 -8.86 16 24 C 0.11 1.53 3.42 -4.48 -0.02 1.52 16 25 C -0.14 -1.31 5.98 -26.60 -0.16 -1.47 16 26 C -0.12 -1.05 6.03 -26.52 -0.16 -1.21 16 27 C -0.13 -1.28 6.04 -28.10 -0.17 -1.45 16 28 C 0.52 7.45 7.46 -11.92 -0.09 7.36 16 29 O -0.56 -9.98 16.06 5.56 0.09 -9.89 16 30 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.39 7.10 8.47 -40.82 -0.35 6.75 16 35 H 0.12 1.59 4.99 -52.49 -0.26 1.33 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.13 1.74 7.99 -52.49 -0.42 1.32 16 40 H 0.09 1.24 6.02 -51.93 -0.31 0.93 16 41 H 0.09 1.41 6.63 -51.93 -0.34 1.06 16 42 H 0.07 0.56 7.79 -51.93 -0.40 0.15 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16 46 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -31.48 374.79 -9.64 -41.12 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.92 Total: 10.45 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -3.52 Total: -3.56 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.02 Total: -47.41 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: 0.16 Total: -21.69 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.48 -9.64 -41.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066623174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.140 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds