Wall clock time and date at job start Tue Mar 31 2020 15:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47552 * 2 1 4 4 C 1.50707 * 109.46544 * 119.99350 * 2 1 3 5 5 H 1.08001 * 119.99522 * 120.00085 * 4 2 1 6 6 C 1.37871 * 120.00087 * 299.99911 * 4 2 1 7 7 N 1.31508 * 120.00530 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99817 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47241 * 60.00004 * 8 6 4 10 10 H 1.48497 * 109.47207 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47350 * 299.99997 * 8 6 4 12 12 N 1.46495 * 109.47279 * 239.99272 * 2 1 3 13 13 C 1.34774 * 120.00032 * 85.00148 * 12 2 1 14 14 O 1.21279 * 119.99605 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00079 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.47148 * 31.84633 * 15 13 12 17 17 C 1.50697 * 109.47216 * 271.84355 * 15 13 12 18 18 C 1.38237 * 119.99985 * 252.71985 * 17 15 13 19 19 C 1.38234 * 120.00135 * 179.79272 * 18 17 15 20 20 C 1.38244 * 119.99727 * 0.43637 * 19 18 17 21 21 C 1.38237 * 119.99978 * 359.81434 * 20 19 18 22 22 C 1.38232 * 119.99814 * 359.97438 * 21 20 19 23 23 N 1.46504 * 109.46857 * 151.84145 * 15 13 12 24 24 C 1.45753 * 117.94560 * 38.38682 * 23 15 13 25 25 C 1.52922 * 110.48903 * 160.92412 * 24 23 15 26 26 C 1.53339 * 108.67305 * 50.75043 * 25 24 23 27 27 C 1.53073 * 108.42656 * 292.46794 * 26 25 24 28 28 C 1.33231 * 117.98404 * 218.45516 * 23 15 13 29 29 O 1.21282 * 118.15894 * 2.21511 * 28 23 15 30 30 H 1.09000 * 109.47018 * 300.00698 * 1 2 3 31 31 H 1.09001 * 109.46236 * 60.00400 * 1 2 3 32 32 H 1.08997 * 109.47276 * 180.02562 * 1 2 3 33 33 H 0.96999 * 120.00823 * 179.97438 * 7 6 4 34 34 H 0.96999 * 120.00229 * 265.00448 * 12 2 1 35 35 H 1.07997 * 119.99839 * 359.97438 * 18 17 15 36 36 H 1.07992 * 120.00517 * 180.27119 * 19 18 17 37 37 H 1.08004 * 119.99852 * 179.83722 * 20 19 18 38 38 H 1.07997 * 119.99668 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00141 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.30348 * 40.61274 * 24 23 15 41 41 H 1.09001 * 109.30290 * 281.23315 * 24 23 15 42 42 H 1.09004 * 109.60028 * 290.99236 * 25 24 23 43 43 H 1.09000 * 109.60434 * 170.50785 * 25 24 23 44 44 H 1.09003 * 109.67429 * 172.73929 * 26 25 24 45 45 H 1.08995 * 109.67891 * 52.20309 * 26 25 24 46 46 H 1.09004 * 109.40185 * 169.03116 * 27 26 25 47 47 H 1.09002 * 109.40439 * 288.86167 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3223 -1.1192 4.0081 9 1 3.8073 -1.1187 4.0080 10 1 1.8267 -0.4195 5.2205 11 1 1.8278 -2.5195 4.0085 12 7 2.0184 -0.6907 -1.1960 13 6 2.1472 -0.0185 -2.3571 14 8 1.8592 1.1583 -2.4115 15 6 2.6501 -0.7289 -3.5873 16 1 2.3340 -1.7717 -3.5594 17 6 4.1550 -0.6610 -3.6267 18 6 4.7860 0.1646 -4.5384 19 6 6.1664 0.2302 -4.5717 20 6 6.9160 -0.5367 -3.6992 21 6 6.2851 -1.3662 -2.7910 22 6 4.9046 -1.4284 -2.7548 23 7 2.1006 -0.0840 -4.7825 24 6 1.9843 1.3689 -4.7822 25 6 1.8551 1.8957 -6.2120 26 6 0.7436 1.1155 -6.9242 27 6 1.2070 -0.3324 -7.1029 28 6 1.7371 -0.8617 -5.8013 29 8 1.8417 -2.0629 -5.6702 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 0.7080 1.1612 3.4843 34 1 2.2491 -1.6319 -1.1524 35 1 4.2004 0.7605 -5.2227 36 1 6.6593 0.8784 -5.2809 37 1 7.9946 -0.4874 -3.7270 38 1 6.8707 -1.9655 -2.1097 39 1 4.4116 -2.0761 -2.0450 40 1 2.8705 1.8013 -4.3177 41 1 1.1032 1.6597 -4.2102 42 1 2.7979 1.7540 -6.7405 43 1 1.6014 2.9556 -6.1897 44 1 0.5492 1.5616 -7.8996 45 1 -0.1646 1.1384 -6.3221 46 1 0.3654 -0.9446 -7.4269 47 1 1.9937 -0.3705 -7.8565 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066623174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:14 Heat of formation + Delta-G solvation = -59.372428 kcal Electronic energy + Delta-G solvation = -29484.299860 eV Core-core repulsion = 25631.153507 eV Total energy + Delta-G solvation = -3853.146353 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.37176 -40.40903 -39.72093 -37.60623 -36.73329 -35.43976 -34.40905 -32.46883 -31.73276 -30.94715 -30.57501 -28.13814 -27.35188 -25.43413 -23.87437 -23.48383 -23.22872 -22.17450 -21.31565 -19.71913 -18.98317 -18.42701 -17.93227 -17.61127 -17.05011 -16.85904 -16.58840 -16.23768 -15.97529 -15.70242 -15.52656 -15.12545 -15.01076 -14.74778 -14.45225 -14.31647 -14.09992 -14.04493 -13.81015 -13.68691 -13.44930 -13.02490 -12.92720 -12.78830 -12.55072 -12.34912 -12.31716 -12.19882 -12.10642 -11.94864 -11.91641 -11.75794 -11.15740 -11.07359 -10.65819 -10.61359 -9.92706 -9.84113 -9.72019 -9.61679 -8.19380 -6.36684 0.30465 0.45809 1.40791 1.43930 1.45723 1.53244 1.61062 1.82799 2.34180 2.51456 2.90378 3.11230 3.53192 3.61906 3.75649 3.88269 3.91748 3.94274 3.96351 4.09667 4.21134 4.25218 4.48152 4.55229 4.59010 4.63033 4.70047 4.71940 4.86748 4.87002 4.92742 4.99648 5.04393 5.06946 5.10156 5.14270 5.24917 5.36620 5.40160 5.50323 5.54433 5.56852 5.58259 5.63335 5.84028 6.04963 6.05716 6.41080 6.68289 6.79766 7.03354 7.24922 7.40428 8.86638 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012365 B = 0.004093 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.823540 B = 6838.614236 C = 8190.545124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.276 3.724 3 H 0.004 0.996 4 C -0.548 4.548 5 H 0.071 0.929 6 C 0.019 3.981 7 N -0.916 5.916 8 Si 0.970 3.030 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.266 1.266 12 N -0.698 5.698 13 C 0.505 3.495 14 O -0.569 6.569 15 C 0.165 3.835 16 H 0.114 0.886 17 C -0.107 4.107 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.124 4.124 23 N -0.579 5.579 24 C 0.118 3.882 25 C -0.133 4.133 26 C -0.118 4.118 27 C -0.122 4.122 28 C 0.508 3.492 29 O -0.598 6.598 30 H 0.069 0.931 31 H 0.012 0.988 32 H 0.036 0.964 33 H 0.266 0.734 34 H 0.401 0.599 35 H 0.131 0.869 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.144 0.856 39 H 0.122 0.878 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.060 0.940 46 H 0.109 0.891 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.272 -0.283 -19.711 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.173 3.827 3 H 0.022 0.978 4 C -0.586 4.586 5 H 0.089 0.911 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.794 3.206 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.191 1.191 12 N -0.346 5.346 13 C 0.290 3.710 14 O -0.450 6.450 15 C 0.056 3.944 16 H 0.131 0.869 17 C -0.109 4.109 18 C -0.136 4.136 19 C -0.140 4.140 20 C -0.137 4.137 21 C -0.141 4.141 22 C -0.142 4.142 23 N -0.310 5.310 24 C -0.004 4.004 25 C -0.171 4.171 26 C -0.156 4.156 27 C -0.162 4.162 28 C 0.299 3.701 29 O -0.480 6.480 30 H 0.088 0.912 31 H 0.031 0.969 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.235 0.765 35 H 0.149 0.851 36 H 0.169 0.831 37 H 0.170 0.830 38 H 0.162 0.838 39 H 0.140 0.860 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.121 0.879 44 H 0.128 0.872 45 H 0.079 0.921 46 H 0.127 0.873 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.988 0.094 -19.541 20.753 hybrid contribution -0.057 -0.725 1.522 1.687 sum 6.931 -0.631 -18.019 19.316 Atomic orbital electron populations 1.21897 0.98284 0.99283 0.99669 1.18359 0.90971 0.91987 0.81363 0.97819 1.21472 1.32763 1.13603 0.90767 0.91078 1.25736 0.94792 0.95525 1.02131 1.70023 1.36800 1.23821 1.24716 0.85433 0.78720 0.78688 0.77732 1.19518 1.21036 1.19079 1.46325 1.64526 1.14067 1.09669 1.20765 0.77763 0.87340 0.85127 1.90627 1.52505 1.16927 1.84910 1.19604 0.91696 0.98696 0.84360 0.86864 1.19820 0.92677 0.99539 0.98858 1.21278 0.95716 0.98141 0.98493 1.21481 0.93048 0.99685 0.99827 1.21573 1.01410 0.95703 0.95004 1.21416 0.93691 0.99585 0.99380 1.21148 0.95337 0.99324 0.98431 1.47148 1.61538 1.08515 1.13797 1.21711 1.02910 0.77238 0.98546 1.22050 1.00560 1.01615 0.92866 1.21672 0.98008 0.92914 1.02956 1.21711 1.03735 0.98591 0.92118 1.21142 0.76320 0.86062 0.86586 1.90679 1.57211 1.17162 1.82960 0.91185 0.96901 0.94516 0.92480 0.76489 0.85078 0.83118 0.83013 0.83822 0.85974 0.91265 0.92306 0.89670 0.87947 0.87166 0.92113 0.87314 0.85923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 9.26 71.98 0.67 -6.12 16 2 C 0.28 14.37 2.56 44.25 0.11 14.49 16 3 H 0.00 0.24 7.58 -2.39 -0.02 0.22 16 4 C -0.55 -29.09 8.73 25.60 0.22 -28.86 16 5 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 6 C 0.02 0.99 5.30 84.65 0.45 1.44 16 7 N -0.92 -52.19 11.32 21.44 0.24 -51.95 16 8 Si 0.97 42.02 29.54 68.60 2.03 44.04 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 12 N -0.70 -30.09 5.07 -446.09 -2.26 -32.35 16 13 C 0.51 20.84 6.85 87.66 0.60 21.44 16 14 O -0.57 -26.38 12.36 -3.03 -0.04 -26.41 16 15 C 0.16 5.66 2.45 43.50 0.11 5.76 16 16 H 0.11 4.06 6.88 -2.39 -0.02 4.04 16 17 C -0.11 -3.38 5.15 -19.87 -0.10 -3.49 16 18 C -0.12 -3.21 8.59 22.27 0.19 -3.02 16 19 C -0.12 -2.72 10.05 22.27 0.22 -2.49 16 20 C -0.12 -2.55 10.05 22.27 0.22 -2.32 16 21 C -0.12 -3.03 10.05 22.27 0.22 -2.81 16 22 C -0.12 -3.69 9.63 22.27 0.21 -3.48 16 23 N -0.58 -17.36 1.94 -811.18 -1.57 -18.94 16 24 C 0.12 3.20 3.42 86.49 0.30 3.49 16 25 C -0.13 -2.17 5.98 30.68 0.18 -1.99 16 26 C -0.12 -1.67 6.03 30.73 0.19 -1.48 16 27 C -0.12 -2.14 6.04 29.71 0.18 -1.96 16 28 C 0.51 14.53 7.46 87.73 0.65 15.18 16 29 O -0.60 -21.69 16.06 -3.04 -0.05 -21.74 16 30 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 31 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.40 15.26 8.47 -92.71 -0.79 14.48 16 35 H 0.13 3.24 4.99 -2.91 -0.01 3.22 16 36 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 37 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 39 H 0.12 3.54 7.99 -2.91 -0.02 3.51 16 40 H 0.07 2.08 6.02 -2.39 -0.01 2.07 16 41 H 0.06 1.95 6.63 -2.39 -0.02 1.93 16 42 H 0.08 1.13 7.79 -2.39 -0.02 1.11 16 43 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 46 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -71.48 374.79 3.18 -68.29 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: 0.20 Total: 35.26 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 4.63 Total: 3.79 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -3.59 Total: -103.23 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -0.09 Total: -48.15 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -71.48 3.18 -68.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066623174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.922 kcal (2) G-P(sol) polarization free energy of solvation -71.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds