Wall clock time and date at job start Tue Mar 31 2020 15:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47467 * 2 1 4 4 C 1.50701 * 109.47176 * 239.99866 * 2 1 3 5 5 H 1.07997 * 119.99998 * 266.42501 * 4 2 1 6 6 C 1.37879 * 119.99798 * 86.42368 * 4 2 1 7 7 N 1.31514 * 119.99962 * 185.17892 * 6 4 2 8 8 Si 1.86796 * 120.00037 * 5.18354 * 6 4 2 9 9 H 1.48494 * 109.47617 * 93.75025 * 8 6 4 10 10 H 1.48509 * 109.46911 * 213.74694 * 8 6 4 11 11 H 1.48495 * 109.47102 * 333.74422 * 8 6 4 12 12 N 1.46501 * 109.47567 * 120.00097 * 2 1 3 13 13 C 1.34779 * 119.99489 * 275.00194 * 12 2 1 14 14 O 1.21276 * 120.00842 * 359.97438 * 13 12 2 15 15 C 1.50711 * 119.99597 * 179.97438 * 13 12 2 16 16 H 1.08995 * 109.46783 * 59.99726 * 15 13 12 17 17 C 1.50699 * 109.47029 * 299.99547 * 15 13 12 18 18 C 1.38236 * 119.99862 * 178.83168 * 17 15 13 19 19 C 1.38235 * 119.99855 * 179.79147 * 18 17 15 20 20 C 1.38237 * 120.00003 * 0.44199 * 19 18 17 21 21 C 1.38235 * 120.00199 * 359.81115 * 20 19 18 22 22 C 1.38239 * 120.00008 * 359.11002 * 17 15 13 23 23 N 1.46499 * 109.46980 * 179.97438 * 15 13 12 24 24 C 1.45752 * 117.94771 * 244.40652 * 23 15 13 25 25 C 1.52918 * 110.48713 * 160.92532 * 24 23 15 26 26 C 1.53346 * 108.67535 * 50.75840 * 25 24 23 27 27 C 1.53072 * 108.41914 * 292.46249 * 26 25 24 28 28 C 1.33235 * 117.98157 * 64.48301 * 23 15 13 29 29 O 1.21279 * 118.16165 * 2.20940 * 28 23 15 30 30 H 1.09001 * 109.47575 * 184.91618 * 1 2 3 31 31 H 1.09006 * 109.47194 * 304.91258 * 1 2 3 32 32 H 1.09000 * 109.47237 * 64.90828 * 1 2 3 33 33 H 0.97001 * 120.00268 * 180.02562 * 7 6 4 34 34 H 0.96993 * 120.00565 * 94.99450 * 12 2 1 35 35 H 1.08000 * 119.99950 * 359.97438 * 18 17 15 36 36 H 1.08004 * 119.99957 * 180.27256 * 19 18 17 37 37 H 1.07998 * 120.00194 * 179.83531 * 20 19 18 38 38 H 1.07994 * 120.00111 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.99865 * 359.97341 * 22 17 15 40 40 H 1.09006 * 109.30236 * 40.61555 * 24 23 15 41 41 H 1.08996 * 109.30322 * 281.24104 * 24 23 15 42 42 H 1.08999 * 109.60652 * 290.99497 * 25 24 23 43 43 H 1.09007 * 109.60159 * 170.51108 * 25 24 23 44 44 H 1.08995 * 109.67499 * 172.73508 * 26 25 24 45 45 H 1.08996 * 109.67658 * 52.19733 * 26 25 24 46 46 H 1.09001 * 109.39690 * 169.03031 * 27 26 25 47 47 H 1.08998 * 109.40653 * 288.86186 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2672 -1.7637 -1.1877 6 6 2.1918 -0.0157 -2.4107 7 7 2.5320 -0.6545 -3.5088 8 14 1.9250 1.8326 -2.4499 9 1 3.2233 2.5247 -2.2489 10 1 1.3546 2.2226 -3.7645 11 1 0.9847 2.2201 -1.3679 12 7 2.0184 -0.6906 1.1961 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6490 -0.7288 3.5877 16 1 3.6480 -1.1212 3.3985 17 6 1.7186 -1.8649 3.9263 18 6 1.9892 -2.6805 5.0091 19 6 1.1335 -3.7200 5.3223 20 6 0.0121 -3.9496 4.5472 21 6 -0.2556 -3.1373 3.4612 22 6 0.5978 -2.0950 3.1506 23 7 2.6989 0.2128 4.7090 24 6 4.0028 0.5269 5.2796 25 6 3.9372 1.8282 6.0801 26 6 2.7592 1.7441 7.0583 27 6 1.4591 1.7399 6.2503 28 6 1.5498 0.7275 5.1448 29 8 0.5214 0.3589 4.6181 30 1 -0.3634 -1.0239 0.0881 31 1 -0.3634 0.5882 0.8428 32 1 -0.3634 0.4358 -0.9307 33 1 2.6446 -0.1657 -4.3391 34 1 2.2490 -1.6317 1.1527 35 1 2.8675 -2.5037 5.6122 36 1 1.3425 -4.3546 6.1709 37 1 -0.6550 -4.7634 4.7902 38 1 -1.1319 -3.3164 2.8559 39 1 0.3886 -1.4603 2.3022 40 1 4.7313 0.6347 4.4760 41 1 4.3136 -0.2851 5.9369 42 1 3.7898 2.6682 5.4013 43 1 4.8652 1.9628 6.6360 44 1 2.7739 2.6060 7.7253 45 1 2.8316 0.8265 7.6419 46 1 0.6262 1.4861 6.9061 47 1 1.2951 2.7290 5.8229 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066623175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:18 Heat of formation + Delta-G solvation = -36.079727 kcal Electronic energy + Delta-G solvation = -29929.916868 eV Core-core repulsion = 26077.780562 eV Total energy + Delta-G solvation = -3852.136306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.07020 -38.98664 -38.25854 -36.33262 -35.00949 -34.28834 -32.46255 -31.33027 -30.69841 -29.62923 -29.53975 -26.83495 -25.24812 -24.42028 -22.92765 -22.37943 -21.77571 -20.66647 -19.58406 -18.54831 -17.57636 -16.96328 -16.82838 -16.27979 -15.79100 -15.34543 -15.22588 -14.73983 -14.57313 -14.35538 -14.07717 -13.93945 -13.72657 -13.63390 -13.22771 -13.14090 -12.88137 -12.60973 -12.52399 -12.23425 -12.13647 -11.76470 -11.53796 -11.42429 -11.16164 -11.14038 -11.11413 -10.92254 -10.84766 -10.75477 -10.49233 -9.83255 -9.59891 -9.36369 -9.17195 -8.73468 -8.67638 -8.53108 -8.40813 -8.01623 -6.20638 -4.22941 1.44162 1.61656 2.86725 3.06172 3.24435 3.28156 3.35313 3.44431 4.00336 4.02523 4.34895 4.51990 4.55029 4.59147 4.69856 4.83874 4.98953 5.09650 5.13516 5.18250 5.22500 5.29402 5.33568 5.36952 5.44590 5.54360 5.65832 5.68024 5.71773 5.74137 5.82129 6.00896 6.09444 6.22499 6.36151 6.40665 6.58061 6.60255 6.68867 6.76348 6.77962 6.99253 7.17032 7.23254 7.40412 7.57359 7.60539 8.15010 8.44878 8.58141 8.79507 8.99260 9.41715 10.91262 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012121 B = 0.004672 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.508555 B = 5991.222763 C = 7402.697913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.235 3.765 3 H 0.048 0.952 4 C -0.530 4.530 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.890 5.890 8 Si 0.869 3.131 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.256 1.256 12 N -0.704 5.704 13 C 0.504 3.496 14 O -0.537 6.537 15 C 0.164 3.836 16 H 0.116 0.884 17 C -0.079 4.079 18 C -0.106 4.106 19 C -0.129 4.129 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.085 4.085 23 N -0.586 5.586 24 C 0.114 3.886 25 C -0.135 4.135 26 C -0.121 4.121 27 C -0.131 4.131 28 C 0.524 3.476 29 O -0.525 6.525 30 H 0.045 0.955 31 H 0.031 0.969 32 H 0.053 0.947 33 H 0.267 0.733 34 H 0.394 0.606 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.139 0.861 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.095 0.905 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.647 -1.572 22.417 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.133 3.867 3 H 0.066 0.934 4 C -0.568 4.568 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.527 5.527 8 Si 0.696 3.304 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.180 1.180 12 N -0.354 5.354 13 C 0.287 3.713 14 O -0.414 6.414 15 C 0.056 3.944 16 H 0.133 0.867 17 C -0.080 4.080 18 C -0.125 4.125 19 C -0.147 4.147 20 C -0.137 4.137 21 C -0.137 4.137 22 C -0.103 4.103 23 N -0.319 5.319 24 C -0.008 4.008 25 C -0.173 4.173 26 C -0.159 4.159 27 C -0.171 4.171 28 C 0.312 3.688 29 O -0.401 6.401 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.228 0.772 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.157 0.843 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.113 0.887 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.929 -0.841 21.971 22.071 hybrid contribution 0.141 0.532 -0.240 0.601 sum 2.070 -0.309 21.731 21.832 Atomic orbital electron populations 1.22288 0.98720 1.00083 0.99794 1.19107 0.90791 0.94262 0.82566 0.93419 1.21011 1.45556 0.97825 0.92381 0.90312 1.24863 0.93820 0.98311 0.95266 1.69888 1.46778 1.36194 0.99844 0.86964 0.79480 0.86036 0.77948 1.20170 1.21069 1.18006 1.46575 1.65256 1.13824 1.09725 1.20382 0.78677 0.87670 0.84533 1.90633 1.50052 1.15999 1.84698 1.19891 0.99923 0.87984 0.86581 0.86670 1.19530 0.96465 0.95121 0.96933 1.20767 0.99561 0.95357 0.96789 1.20962 0.95470 0.98323 0.99965 1.21113 0.97427 0.99490 0.95678 1.21144 0.99520 0.95555 0.97468 1.21572 0.92664 0.96529 0.99562 1.47013 1.06929 1.45029 1.32949 1.21429 0.84490 0.97252 0.97678 1.21867 0.99343 0.97654 0.98415 1.21645 0.93738 1.02802 0.97733 1.21632 0.99531 0.99663 0.96268 1.19882 0.82973 0.81891 0.84083 1.90749 1.33295 1.58997 1.57014 0.93577 0.95031 0.92803 0.92346 0.77194 0.86744 0.86515 0.86513 0.86141 0.84306 0.90652 0.91800 0.90585 0.89875 0.90788 0.91275 0.88698 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.56 37.15 0.32 -3.14 16 2 C 0.24 5.71 2.09 -69.09 -0.14 5.56 16 3 H 0.05 1.27 5.08 -51.93 -0.26 1.00 16 4 C -0.53 -14.30 9.06 -34.44 -0.31 -14.61 16 5 H 0.08 2.24 8.03 -52.49 -0.42 1.81 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -26.32 13.96 55.43 0.77 -25.54 16 8 Si 0.87 21.66 26.42 -169.99 -4.49 17.17 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.26 -6.35 6.07 56.52 0.34 -6.01 16 12 N -0.70 -14.51 3.38 -54.93 -0.19 -14.70 16 13 C 0.50 10.08 5.32 -10.98 -0.06 10.02 16 14 O -0.54 -12.69 14.64 -11.42 -0.17 -12.86 16 15 C 0.16 2.51 2.70 -70.23 -0.19 2.32 16 16 H 0.12 1.44 7.82 -51.93 -0.41 1.04 16 17 C -0.08 -1.20 3.79 -104.62 -0.40 -1.60 16 18 C -0.11 -1.36 9.60 -39.58 -0.38 -1.74 16 19 C -0.13 -1.55 10.05 -39.58 -0.40 -1.94 16 20 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 21 C -0.12 -1.75 10.05 -39.58 -0.40 -2.14 16 22 C -0.08 -1.42 7.53 -39.58 -0.30 -1.72 16 23 N -0.59 -8.09 2.43 -170.05 -0.41 -8.51 16 24 C 0.11 1.08 6.24 -4.49 -0.03 1.06 16 25 C -0.14 -1.08 6.02 -26.59 -0.16 -1.24 16 26 C -0.12 -0.95 6.03 -26.52 -0.16 -1.11 16 27 C -0.13 -1.49 6.04 -28.10 -0.17 -1.66 16 28 C 0.52 8.24 6.17 -11.92 -0.07 8.17 16 29 O -0.53 -10.54 13.41 -11.43 -0.15 -10.69 16 30 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 1.25 7.08 -51.93 -0.37 0.88 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.39 7.36 7.95 -40.82 -0.32 7.03 16 35 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.14 2.67 4.82 -52.49 -0.25 2.42 16 40 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 46 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 371.86 15.07 5.60 5.60 Total: -1.00 -34.99 371.86 -9.52 -44.51 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.14 Total: 8.52 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -3.34 Total: -3.49 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.17 Total: -48.75 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.32 Total: -23.56 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.49 Total: 17.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.99 -9.52 -44.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066623175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.427 kcal (2) G-P(sol) polarization free energy of solvation -34.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds