Wall clock time and date at job start Tue Mar 31 2020 15:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47467 * 2 1 4 4 C 1.50701 * 109.47176 * 239.99866 * 2 1 3 5 5 H 1.07997 * 119.99998 * 266.42501 * 4 2 1 6 6 C 1.37879 * 119.99798 * 86.42368 * 4 2 1 7 7 N 1.31514 * 119.99962 * 185.17892 * 6 4 2 8 8 Si 1.86796 * 120.00037 * 5.18354 * 6 4 2 9 9 H 1.48494 * 109.47617 * 93.75025 * 8 6 4 10 10 H 1.48509 * 109.46911 * 213.74694 * 8 6 4 11 11 H 1.48495 * 109.47102 * 333.74422 * 8 6 4 12 12 N 1.46501 * 109.47567 * 120.00097 * 2 1 3 13 13 C 1.34779 * 119.99489 * 275.00194 * 12 2 1 14 14 O 1.21276 * 120.00842 * 359.97438 * 13 12 2 15 15 C 1.50711 * 119.99597 * 179.97438 * 13 12 2 16 16 H 1.08995 * 109.46783 * 59.99726 * 15 13 12 17 17 C 1.50699 * 109.47029 * 299.99547 * 15 13 12 18 18 C 1.38236 * 119.99862 * 178.83168 * 17 15 13 19 19 C 1.38235 * 119.99855 * 179.79147 * 18 17 15 20 20 C 1.38237 * 120.00003 * 0.44199 * 19 18 17 21 21 C 1.38235 * 120.00199 * 359.81115 * 20 19 18 22 22 C 1.38239 * 120.00008 * 359.11002 * 17 15 13 23 23 N 1.46499 * 109.46980 * 179.97438 * 15 13 12 24 24 C 1.45752 * 117.94771 * 244.40652 * 23 15 13 25 25 C 1.52918 * 110.48713 * 160.92532 * 24 23 15 26 26 C 1.53346 * 108.67535 * 50.75840 * 25 24 23 27 27 C 1.53072 * 108.41914 * 292.46249 * 26 25 24 28 28 C 1.33235 * 117.98157 * 64.48301 * 23 15 13 29 29 O 1.21279 * 118.16165 * 2.20940 * 28 23 15 30 30 H 1.09001 * 109.47575 * 184.91618 * 1 2 3 31 31 H 1.09006 * 109.47194 * 304.91258 * 1 2 3 32 32 H 1.09000 * 109.47237 * 64.90828 * 1 2 3 33 33 H 0.97001 * 120.00268 * 180.02562 * 7 6 4 34 34 H 0.96993 * 120.00565 * 94.99450 * 12 2 1 35 35 H 1.08000 * 119.99950 * 359.97438 * 18 17 15 36 36 H 1.08004 * 119.99957 * 180.27256 * 19 18 17 37 37 H 1.07998 * 120.00194 * 179.83531 * 20 19 18 38 38 H 1.07994 * 120.00111 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.99865 * 359.97341 * 22 17 15 40 40 H 1.09006 * 109.30236 * 40.61555 * 24 23 15 41 41 H 1.08996 * 109.30322 * 281.24104 * 24 23 15 42 42 H 1.08999 * 109.60652 * 290.99497 * 25 24 23 43 43 H 1.09007 * 109.60159 * 170.51108 * 25 24 23 44 44 H 1.08995 * 109.67499 * 172.73508 * 26 25 24 45 45 H 1.08996 * 109.67658 * 52.19733 * 26 25 24 46 46 H 1.09001 * 109.39690 * 169.03031 * 27 26 25 47 47 H 1.08998 * 109.40653 * 288.86186 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2672 -1.7637 -1.1877 6 6 2.1918 -0.0157 -2.4107 7 7 2.5320 -0.6545 -3.5088 8 14 1.9250 1.8326 -2.4499 9 1 3.2233 2.5247 -2.2489 10 1 1.3546 2.2226 -3.7645 11 1 0.9847 2.2201 -1.3679 12 7 2.0184 -0.6906 1.1961 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6490 -0.7288 3.5877 16 1 3.6480 -1.1212 3.3985 17 6 1.7186 -1.8649 3.9263 18 6 1.9892 -2.6805 5.0091 19 6 1.1335 -3.7200 5.3223 20 6 0.0121 -3.9496 4.5472 21 6 -0.2556 -3.1373 3.4612 22 6 0.5978 -2.0950 3.1506 23 7 2.6989 0.2128 4.7090 24 6 4.0028 0.5269 5.2796 25 6 3.9372 1.8282 6.0801 26 6 2.7592 1.7441 7.0583 27 6 1.4591 1.7399 6.2503 28 6 1.5498 0.7275 5.1448 29 8 0.5214 0.3589 4.6181 30 1 -0.3634 -1.0239 0.0881 31 1 -0.3634 0.5882 0.8428 32 1 -0.3634 0.4358 -0.9307 33 1 2.6446 -0.1657 -4.3391 34 1 2.2490 -1.6317 1.1527 35 1 2.8675 -2.5037 5.6122 36 1 1.3425 -4.3546 6.1709 37 1 -0.6550 -4.7634 4.7902 38 1 -1.1319 -3.3164 2.8559 39 1 0.3886 -1.4603 2.3022 40 1 4.7313 0.6347 4.4760 41 1 4.3136 -0.2851 5.9369 42 1 3.7898 2.6682 5.4013 43 1 4.8652 1.9628 6.6360 44 1 2.7739 2.6060 7.7253 45 1 2.8316 0.8265 7.6419 46 1 0.6262 1.4861 6.9061 47 1 1.2951 2.7290 5.8229 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066623175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:17 Heat of formation + Delta-G solvation = -57.767580 kcal Electronic energy + Delta-G solvation = -29930.857324 eV Core-core repulsion = 26077.780562 eV Total energy + Delta-G solvation = -3853.076762 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.26595 -40.24735 -39.55611 -37.37259 -36.80283 -35.40973 -34.45095 -32.58734 -31.75661 -31.21810 -30.47590 -28.01425 -27.35403 -25.25598 -24.13032 -23.35725 -23.00126 -22.11443 -21.26181 -19.62419 -19.19698 -18.17433 -17.97800 -17.87984 -17.05799 -16.81124 -16.46403 -15.96320 -15.89777 -15.52585 -15.32272 -15.06107 -14.89388 -14.65531 -14.64339 -14.39491 -14.22352 -14.16711 -14.07857 -13.69578 -13.32584 -13.26732 -13.08070 -12.86980 -12.66262 -12.46128 -12.29275 -11.98285 -11.89308 -11.87082 -11.84892 -11.75829 -11.29167 -10.92975 -10.84802 -10.68194 -9.83089 -9.77945 -9.66903 -9.48509 -8.40925 -6.46186 0.40638 0.56577 1.24683 1.30104 1.42820 1.67298 1.74101 2.02789 2.24802 2.50665 2.96206 2.98573 3.60139 3.72247 3.80312 3.88624 3.93669 3.97069 4.03007 4.18337 4.22226 4.31567 4.40042 4.53192 4.58568 4.63269 4.65506 4.67488 4.73326 4.79957 4.87034 4.95484 5.00965 5.07035 5.08401 5.14597 5.18686 5.28086 5.35598 5.39326 5.42926 5.57760 5.65718 5.67108 5.69484 6.10362 6.14843 6.55626 6.56699 6.82011 7.17893 7.32090 7.42244 8.74177 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012121 B = 0.004672 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.508555 B = 5991.222763 C = 7402.697913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.243 3.757 3 H 0.027 0.973 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.037 3.963 7 N -0.928 5.928 8 Si 0.922 3.078 9 H -0.272 1.272 10 H -0.274 1.274 11 H -0.260 1.260 12 N -0.702 5.702 13 C 0.502 3.498 14 O -0.579 6.579 15 C 0.169 3.831 16 H 0.147 0.853 17 C -0.088 4.088 18 C -0.103 4.103 19 C -0.123 4.123 20 C -0.119 4.119 21 C -0.137 4.137 22 C -0.116 4.116 23 N -0.582 5.582 24 C 0.102 3.898 25 C -0.132 4.132 26 C -0.111 4.111 27 C -0.130 4.130 28 C 0.510 3.490 29 O -0.580 6.580 30 H 0.055 0.945 31 H 0.023 0.977 32 H 0.049 0.951 33 H 0.271 0.729 34 H 0.403 0.597 35 H 0.145 0.855 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.053 0.947 43 H 0.118 0.882 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.248 -2.157 25.930 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.139 3.861 3 H 0.045 0.955 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.163 4.163 7 N -0.566 5.566 8 Si 0.747 3.253 9 H -0.197 1.197 10 H -0.199 1.199 11 H -0.184 1.184 12 N -0.352 5.352 13 C 0.288 3.712 14 O -0.459 6.459 15 C 0.061 3.939 16 H 0.164 0.836 17 C -0.089 4.089 18 C -0.121 4.121 19 C -0.141 4.141 20 C -0.137 4.137 21 C -0.155 4.155 22 C -0.135 4.135 23 N -0.314 5.314 24 C -0.019 4.019 25 C -0.170 4.170 26 C -0.149 4.149 27 C -0.169 4.169 28 C 0.300 3.700 29 O -0.460 6.460 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.238 0.762 35 H 0.163 0.837 36 H 0.171 0.829 37 H 0.162 0.838 38 H 0.139 0.861 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.117 0.883 42 H 0.072 0.928 43 H 0.136 0.864 44 H 0.115 0.885 45 H 0.103 0.897 46 H 0.118 0.882 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.578 -1.441 25.513 25.803 hybrid contribution -0.371 0.648 -1.284 1.485 sum 3.208 -0.793 24.229 24.453 Atomic orbital electron populations 1.22149 0.98003 1.00518 0.99125 1.18784 0.91227 0.93023 0.83108 0.95537 1.21133 1.44802 0.96985 0.93447 0.92457 1.25494 0.93890 1.01928 0.95037 1.69974 1.48399 1.37766 1.00509 0.86120 0.79407 0.81668 0.78094 1.19740 1.19929 1.18402 1.46341 1.65425 1.14122 1.09278 1.21236 0.77348 0.87244 0.85360 1.90599 1.51822 1.18037 1.85410 1.19874 1.01195 0.88010 0.84823 0.83553 1.19531 0.96023 0.95532 0.97852 1.21076 1.00605 0.94695 0.95761 1.21420 0.94374 0.97975 1.00311 1.21451 0.98182 0.99471 0.94602 1.21288 0.99539 0.95895 0.98777 1.21415 0.94707 0.97530 0.99839 1.47203 1.08213 1.44130 1.31867 1.21854 0.82199 0.99395 0.98492 1.21899 1.01022 0.95921 0.98126 1.21644 0.91212 1.04641 0.97377 1.21670 1.02182 0.97629 0.95448 1.20714 0.82718 0.82029 0.84552 1.90727 1.35312 1.60916 1.59001 0.92590 0.95775 0.93228 0.91977 0.76159 0.83721 0.82867 0.83794 0.86114 0.87805 0.90450 0.88260 0.92792 0.86426 0.88530 0.89706 0.88216 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.67 8.56 71.98 0.62 -6.05 16 2 C 0.24 12.18 2.09 44.24 0.09 12.27 16 3 H 0.03 1.46 5.08 -2.39 -0.01 1.44 16 4 C -0.53 -29.23 9.06 25.60 0.23 -29.00 16 5 H 0.06 3.38 8.03 -2.91 -0.02 3.35 16 6 C 0.04 2.12 5.47 84.66 0.46 2.58 16 7 N -0.93 -55.87 13.96 21.45 0.30 -55.57 16 8 Si 0.92 45.54 26.42 68.60 1.81 47.35 16 9 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 10 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.26 -12.88 6.07 99.48 0.60 -12.28 16 12 N -0.70 -30.00 3.38 -446.10 -1.51 -31.51 16 13 C 0.50 20.63 5.32 87.66 0.47 21.09 16 14 O -0.58 -28.44 14.64 13.22 0.19 -28.25 16 15 C 0.17 5.04 2.70 43.50 0.12 5.16 16 16 H 0.15 3.35 7.82 -2.39 -0.02 3.33 16 17 C -0.09 -2.60 3.79 -19.86 -0.08 -2.68 16 18 C -0.10 -2.31 9.60 22.27 0.21 -2.10 16 19 C -0.12 -2.50 10.05 22.27 0.22 -2.27 16 20 C -0.12 -2.75 10.05 22.27 0.22 -2.53 16 21 C -0.14 -4.06 10.05 22.27 0.22 -3.84 16 22 C -0.12 -4.01 7.53 22.27 0.17 -3.84 16 23 N -0.58 -15.19 2.43 -811.18 -1.97 -17.17 16 24 C 0.10 1.59 6.24 86.49 0.54 2.13 16 25 C -0.13 -1.66 6.02 30.68 0.18 -1.48 16 26 C -0.11 -1.36 6.03 30.73 0.19 -1.17 16 27 C -0.13 -2.81 6.04 29.71 0.18 -2.63 16 28 C 0.51 15.86 6.17 87.73 0.54 16.41 16 29 O -0.58 -24.02 13.41 13.22 0.18 -23.84 16 30 H 0.06 2.51 8.09 -2.39 -0.02 2.49 16 31 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.05 2.36 7.08 -2.39 -0.02 2.34 16 33 H 0.27 15.28 8.31 -92.71 -0.77 14.50 16 34 H 0.40 15.67 7.95 -92.71 -0.74 14.93 16 35 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 37 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.12 3.37 8.06 -2.91 -0.02 3.34 16 39 H 0.10 4.26 4.82 -2.91 -0.01 4.25 16 40 H 0.08 1.20 8.07 -2.38 -0.02 1.18 16 41 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.05 0.93 8.12 -2.39 -0.02 0.91 16 43 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.08 0.82 8.13 -2.39 -0.02 0.80 16 46 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -80.53 371.86 3.73 -76.79 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.14 Total: 30.14 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 4.59 Total: 2.06 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -3.18 Total: -104.24 kcal Atomic # 8 Polarization: -52.46 SS G_CDS: 0.37 Total: -52.09 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.81 Total: 47.35 kcal Total: -80.53 3.73 -76.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066623175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.026 kcal (2) G-P(sol) polarization free energy of solvation -80.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds