Wall clock time and date at job start Tue Mar 31 2020 17:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.47155 * 2 1 4 4 C 1.37095 * 119.99950 * 270.16275 * 3 2 1 5 5 H 1.08001 * 119.99925 * 184.98993 * 4 3 2 6 6 C 1.38946 * 120.00290 * 4.98611 * 4 3 2 7 7 N 1.31409 * 119.99881 * 26.33690 * 6 4 3 8 8 Si 1.86803 * 120.00230 * 206.33874 * 6 4 3 9 9 H 1.48493 * 109.47087 * 59.99724 * 8 6 4 10 10 H 1.48497 * 109.47167 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46999 * 299.99768 * 8 6 4 12 12 C 1.34777 * 119.99987 * 90.15398 * 3 2 1 13 13 O 1.21289 * 120.00349 * 5.12712 * 12 3 2 14 14 C 1.50703 * 119.99798 * 185.11879 * 12 3 2 15 15 H 1.08995 * 110.53996 * 23.06186 * 14 12 3 16 16 C 1.54636 * 110.48114 * 145.66938 * 14 12 3 17 17 C 1.54486 * 101.76183 * 143.47775 * 16 14 12 18 18 N 1.46763 * 105.47284 * 334.58465 * 17 16 14 19 19 C 1.39927 * 124.34873 * 197.01953 * 18 17 16 20 20 C 1.38862 * 120.07164 * 182.65989 * 19 18 17 21 21 C 1.38117 * 119.92757 * 179.76113 * 20 19 18 22 22 C 1.50704 * 119.96396 * 180.21185 * 21 20 19 23 23 C 1.38279 * 120.07148 * 0.49118 * 21 20 19 24 24 C 1.38283 * 120.14215 * 359.76073 * 23 21 20 25 25 C 1.50695 * 119.96877 * 179.97438 * 24 23 21 26 26 C 1.38114 * 120.06819 * 0.02562 * 24 23 21 27 27 C 1.34418 * 111.30213 * 17.01605 * 18 17 16 28 28 O 1.21286 * 124.93934 * 179.55939 * 27 18 17 29 29 H 1.08997 * 109.47166 * 58.67270 * 1 2 3 30 30 H 1.09006 * 109.47026 * 178.66315 * 1 2 3 31 31 H 1.08999 * 109.47066 * 298.66624 * 1 2 3 32 32 H 1.09005 * 109.47110 * 239.99632 * 2 1 3 33 33 H 1.09003 * 109.46976 * 119.99917 * 2 1 3 34 34 H 0.97008 * 120.00458 * 180.02562 * 7 6 4 35 35 H 1.08993 * 110.97294 * 25.36148 * 16 14 12 36 36 H 1.09004 * 110.99971 * 261.60526 * 16 14 12 37 37 H 1.09004 * 110.24540 * 93.58206 * 17 16 14 38 38 H 1.08993 * 110.24416 * 215.58141 * 17 16 14 39 39 H 1.08000 * 120.03515 * 359.97333 * 20 19 18 40 40 H 1.09001 * 109.46832 * 270.27924 * 22 21 20 41 41 H 1.08996 * 109.47185 * 30.27558 * 22 21 20 42 42 H 1.08996 * 109.47063 * 150.27754 * 22 21 20 43 43 H 1.07993 * 119.92961 * 179.74228 * 23 21 20 44 44 H 1.09002 * 109.47321 * 270.02958 * 25 24 23 45 45 H 1.09005 * 109.46749 * 30.02064 * 25 24 23 46 46 H 1.08996 * 109.47537 * 150.02290 * 25 24 23 47 47 H 1.07998 * 120.03525 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2437 2.0285 -1.1873 5 1 2.6793 3.0168 -1.1893 6 6 1.9116 1.4133 -2.3880 7 7 0.9588 0.5089 -2.4214 8 14 2.8196 1.8717 -3.9549 9 1 4.2667 1.5815 -3.7913 10 1 2.2813 1.0785 -5.0890 11 1 2.6329 3.3190 -4.2297 12 6 2.2459 2.0154 1.1672 13 8 2.1362 1.4149 2.2153 14 6 2.6370 3.4708 1.1701 15 1 2.3081 3.9570 0.2517 16 6 2.0433 4.1882 2.4046 17 6 3.1734 5.1769 2.7680 18 7 4.4045 4.5743 2.2436 19 6 5.6951 4.9483 2.6341 20 6 6.8012 4.3560 2.0390 21 6 8.0738 4.7310 2.4233 22 6 9.2748 4.0922 1.7747 23 6 8.2470 5.6878 3.4065 24 6 7.1476 6.2757 4.0047 25 6 7.3409 7.3175 5.0762 26 6 5.8724 5.9083 3.6219 27 6 4.1331 3.6168 1.3400 28 8 4.9665 2.9652 0.7468 29 1 -0.3633 0.5343 -0.8778 30 1 -0.3633 -1.0274 -0.0240 31 1 -0.3633 0.4930 0.9017 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.7271 0.0791 -3.2597 35 1 1.8653 3.4837 3.2170 36 1 1.1282 4.7203 2.1447 37 1 2.9955 6.1431 2.2957 38 1 3.2407 5.2917 3.8498 39 1 6.6666 3.6055 1.2742 40 1 9.5600 3.2021 2.3354 41 1 9.0289 3.8130 0.7502 42 1 10.1040 4.7996 1.7694 43 1 9.2430 5.9762 3.7081 44 1 7.3842 6.8322 6.0513 45 1 8.2719 7.8551 4.8964 46 1 6.5067 8.0187 5.0561 47 1 5.0142 6.3675 4.0897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068231857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:05 Heat of formation + Delta-G solvation = -27.463503 kcal Electronic energy + Delta-G solvation = -28938.201151 eV Core-core repulsion = 25086.438472 eV Total energy + Delta-G solvation = -3851.762678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.01496 -39.16873 -38.05301 -36.31876 -35.11736 -33.50339 -33.25384 -31.59437 -30.27165 -29.31873 -27.74624 -27.20073 -26.52986 -24.86715 -23.18624 -22.75225 -21.36353 -20.23700 -19.54770 -18.90838 -17.30695 -16.98591 -16.44364 -16.28962 -15.79883 -15.26065 -14.66501 -14.39083 -14.29797 -14.06572 -13.89599 -13.55944 -13.53093 -13.25348 -13.00706 -12.98198 -12.72762 -12.51645 -12.49817 -12.28948 -12.00670 -11.86380 -11.79352 -11.57407 -11.42311 -11.15746 -11.05541 -10.99772 -10.98179 -10.61089 -10.43257 -10.25787 -9.87523 -9.66162 -9.21258 -8.92789 -8.52942 -8.52188 -7.86605 -7.73833 -6.43694 -3.88319 1.37199 1.44366 2.80563 2.98781 3.10447 3.20495 3.26541 3.69424 3.87205 4.05498 4.57285 4.59721 4.71728 4.76625 4.87959 5.08566 5.11612 5.19484 5.20725 5.30039 5.34887 5.42783 5.45971 5.47539 5.62412 5.64683 5.74401 5.79487 5.81177 6.02144 6.04206 6.08054 6.14560 6.37794 6.40722 6.52204 6.55359 6.68432 6.74941 6.75430 6.83485 7.01483 7.22355 7.26904 7.28641 7.36381 7.66084 7.83731 8.37250 8.38571 9.01050 9.44513 9.84972 10.51271 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.003593 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.807808 B = 7790.949963 C = 8781.565275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.134 3.866 3 N -0.421 5.421 4 C -0.334 4.334 5 H 0.098 0.902 6 C 0.042 3.958 7 N -0.848 5.848 8 Si 0.913 3.087 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.464 3.536 13 O -0.609 6.609 14 C -0.129 4.129 15 H 0.131 0.869 16 C -0.118 4.118 17 C 0.100 3.900 18 N -0.564 5.564 19 C 0.187 3.813 20 C -0.167 4.167 21 C -0.054 4.054 22 C -0.113 4.113 23 C -0.156 4.156 24 C -0.060 4.060 25 C -0.110 4.110 26 C -0.171 4.171 27 C 0.537 3.463 28 O -0.489 6.489 29 H 0.098 0.902 30 H 0.033 0.967 31 H 0.021 0.979 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.270 0.730 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.157 0.843 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.118 0.882 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.575 12.095 8.686 16.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.012 3.988 3 N -0.136 5.136 4 C -0.462 4.462 5 H 0.116 0.884 6 C -0.164 4.164 7 N -0.485 5.485 8 Si 0.739 3.261 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.198 1.198 12 C 0.251 3.749 13 O -0.497 6.497 14 C -0.153 4.153 15 H 0.149 0.851 16 C -0.156 4.156 17 C -0.022 4.022 18 N -0.288 5.288 19 C 0.092 3.908 20 C -0.187 4.187 21 C -0.055 4.055 22 C -0.170 4.170 23 C -0.175 4.175 24 C -0.060 4.060 25 C -0.167 4.167 26 C -0.192 4.192 27 C 0.325 3.675 28 O -0.362 6.362 29 H 0.116 0.884 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.106 0.894 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.174 0.826 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.136 0.864 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.813 11.245 8.643 16.193 hybrid contribution 0.290 0.302 -0.916 1.007 sum 8.103 11.547 7.727 16.085 Atomic orbital electron populations 1.22115 0.96356 0.99865 1.01821 1.21205 0.94638 0.82679 1.00309 1.43769 1.53682 1.11550 1.04581 1.19563 1.40875 1.03102 0.82629 0.88399 1.25157 0.95077 0.96756 0.99372 1.70173 1.23644 1.27107 1.27603 0.86214 0.80621 0.78688 0.80551 1.19648 1.20842 1.19826 1.18941 0.85042 0.86863 0.84048 1.90522 1.60462 1.67122 1.31550 1.21952 0.92589 0.99056 1.01728 0.85115 1.22615 0.97061 0.97683 0.98216 1.22256 0.82813 0.97093 1.00053 1.45892 1.04803 1.36849 1.41222 1.17791 0.83359 0.95007 0.94656 1.21602 0.90401 1.03165 1.03579 1.19763 0.94486 0.95619 0.95637 1.20787 0.95014 1.00376 1.00830 1.20776 0.98085 0.99583 0.99062 1.19582 0.92393 0.97103 0.96948 1.20755 1.02377 0.96764 0.96821 1.20559 0.97364 1.01214 1.00054 1.20771 0.91240 0.77851 0.77622 1.90610 1.52571 1.45623 1.47349 0.88352 0.94766 0.95978 0.89368 0.93953 0.91932 0.88166 0.88821 0.90361 0.89829 0.82567 0.91086 0.91242 0.91665 0.86413 0.91228 0.91612 0.91646 0.85899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.63 37.16 0.36 -2.95 16 2 C 0.13 3.36 5.40 -4.04 -0.02 3.34 16 3 N -0.42 -10.80 2.62 -114.81 -0.30 -11.10 16 4 C -0.33 -8.50 9.12 -14.94 -0.14 -8.64 16 5 H 0.10 2.40 5.98 -52.49 -0.31 2.09 16 6 C 0.04 1.04 4.92 -17.47 -0.09 0.95 16 7 N -0.85 -21.03 8.19 55.50 0.45 -20.58 16 8 Si 0.91 19.61 29.63 -169.99 -5.04 14.58 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 12 C 0.46 11.40 6.60 -10.98 -0.07 11.33 16 13 O -0.61 -16.25 15.44 5.55 0.09 -16.17 16 14 C -0.13 -2.56 2.61 -91.78 -0.24 -2.80 16 15 H 0.13 2.50 6.18 -51.93 -0.32 2.18 16 16 C -0.12 -1.77 6.65 -25.09 -0.17 -1.94 16 17 C 0.10 1.28 6.44 -3.12 -0.02 1.26 16 18 N -0.56 -9.49 3.14 -112.27 -0.35 -9.84 16 19 C 0.19 3.02 6.61 -83.69 -0.55 2.47 16 20 C -0.17 -2.83 8.95 -39.39 -0.35 -3.18 16 21 C -0.05 -0.76 5.88 -104.65 -0.62 -1.37 16 22 C -0.11 -1.29 10.01 36.01 0.36 -0.93 16 23 C -0.16 -1.90 9.35 -39.55 -0.37 -2.27 16 24 C -0.06 -0.70 5.88 -104.65 -0.62 -1.32 16 25 C -0.11 -0.91 10.01 36.00 0.36 -0.55 16 26 C -0.17 -2.25 9.06 -39.39 -0.36 -2.60 16 27 C 0.54 11.04 7.34 -10.86 -0.08 10.96 16 28 O -0.49 -11.60 14.62 5.55 0.08 -11.52 16 29 H 0.10 2.42 5.94 -51.93 -0.31 2.11 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 2.28 6.10 -51.93 -0.32 1.96 16 33 H 0.04 1.07 7.35 -51.93 -0.38 0.69 16 34 H 0.27 6.36 8.31 -40.82 -0.34 6.03 16 35 H 0.10 1.68 7.05 -51.93 -0.37 1.32 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.89 7.34 -51.93 -0.38 0.51 16 39 H 0.16 3.04 5.21 -52.49 -0.27 2.77 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 42 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 46 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 47 H 0.12 1.33 6.80 -52.49 -0.36 0.97 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -31.07 374.91 -8.82 -39.89 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.79 Total: 7.35 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.61 Total: 1.74 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: -0.20 Total: -41.52 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: 0.17 Total: -27.69 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.04 Total: 14.58 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.07 -8.82 -39.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.426 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds