Wall clock time and date at job start Tue Mar 31 2020 17:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.47155 * 2 1 4 4 C 1.37095 * 119.99950 * 270.16275 * 3 2 1 5 5 H 1.08001 * 119.99925 * 184.98993 * 4 3 2 6 6 C 1.38946 * 120.00290 * 4.98611 * 4 3 2 7 7 N 1.31409 * 119.99881 * 26.33690 * 6 4 3 8 8 Si 1.86803 * 120.00230 * 206.33874 * 6 4 3 9 9 H 1.48493 * 109.47087 * 59.99724 * 8 6 4 10 10 H 1.48497 * 109.47167 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46999 * 299.99768 * 8 6 4 12 12 C 1.34777 * 119.99987 * 90.15398 * 3 2 1 13 13 O 1.21289 * 120.00349 * 5.12712 * 12 3 2 14 14 C 1.50703 * 119.99798 * 185.11879 * 12 3 2 15 15 H 1.08995 * 110.53996 * 23.06186 * 14 12 3 16 16 C 1.54636 * 110.48114 * 145.66938 * 14 12 3 17 17 C 1.54486 * 101.76183 * 143.47775 * 16 14 12 18 18 N 1.46763 * 105.47284 * 334.58465 * 17 16 14 19 19 C 1.39927 * 124.34873 * 197.01953 * 18 17 16 20 20 C 1.38862 * 120.07164 * 182.65989 * 19 18 17 21 21 C 1.38117 * 119.92757 * 179.76113 * 20 19 18 22 22 C 1.50704 * 119.96396 * 180.21185 * 21 20 19 23 23 C 1.38279 * 120.07148 * 0.49118 * 21 20 19 24 24 C 1.38283 * 120.14215 * 359.76073 * 23 21 20 25 25 C 1.50695 * 119.96877 * 179.97438 * 24 23 21 26 26 C 1.38114 * 120.06819 * 0.02562 * 24 23 21 27 27 C 1.34418 * 111.30213 * 17.01605 * 18 17 16 28 28 O 1.21286 * 124.93934 * 179.55939 * 27 18 17 29 29 H 1.08997 * 109.47166 * 58.67270 * 1 2 3 30 30 H 1.09006 * 109.47026 * 178.66315 * 1 2 3 31 31 H 1.08999 * 109.47066 * 298.66624 * 1 2 3 32 32 H 1.09005 * 109.47110 * 239.99632 * 2 1 3 33 33 H 1.09003 * 109.46976 * 119.99917 * 2 1 3 34 34 H 0.97008 * 120.00458 * 180.02562 * 7 6 4 35 35 H 1.08993 * 110.97294 * 25.36148 * 16 14 12 36 36 H 1.09004 * 110.99971 * 261.60526 * 16 14 12 37 37 H 1.09004 * 110.24540 * 93.58206 * 17 16 14 38 38 H 1.08993 * 110.24416 * 215.58141 * 17 16 14 39 39 H 1.08000 * 120.03515 * 359.97333 * 20 19 18 40 40 H 1.09001 * 109.46832 * 270.27924 * 22 21 20 41 41 H 1.08996 * 109.47185 * 30.27558 * 22 21 20 42 42 H 1.08996 * 109.47063 * 150.27754 * 22 21 20 43 43 H 1.07993 * 119.92961 * 179.74228 * 23 21 20 44 44 H 1.09002 * 109.47321 * 270.02958 * 25 24 23 45 45 H 1.09005 * 109.46749 * 30.02064 * 25 24 23 46 46 H 1.08996 * 109.47537 * 150.02290 * 25 24 23 47 47 H 1.07998 * 120.03525 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2437 2.0285 -1.1873 5 1 2.6793 3.0168 -1.1893 6 6 1.9116 1.4133 -2.3880 7 7 0.9588 0.5089 -2.4214 8 14 2.8196 1.8717 -3.9549 9 1 4.2667 1.5815 -3.7913 10 1 2.2813 1.0785 -5.0890 11 1 2.6329 3.3190 -4.2297 12 6 2.2459 2.0154 1.1672 13 8 2.1362 1.4149 2.2153 14 6 2.6370 3.4708 1.1701 15 1 2.3081 3.9570 0.2517 16 6 2.0433 4.1882 2.4046 17 6 3.1734 5.1769 2.7680 18 7 4.4045 4.5743 2.2436 19 6 5.6951 4.9483 2.6341 20 6 6.8012 4.3560 2.0390 21 6 8.0738 4.7310 2.4233 22 6 9.2748 4.0922 1.7747 23 6 8.2470 5.6878 3.4065 24 6 7.1476 6.2757 4.0047 25 6 7.3409 7.3175 5.0762 26 6 5.8724 5.9083 3.6219 27 6 4.1331 3.6168 1.3400 28 8 4.9665 2.9652 0.7468 29 1 -0.3633 0.5343 -0.8778 30 1 -0.3633 -1.0274 -0.0240 31 1 -0.3633 0.4930 0.9017 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.7271 0.0791 -3.2597 35 1 1.8653 3.4837 3.2170 36 1 1.1282 4.7203 2.1447 37 1 2.9955 6.1431 2.2957 38 1 3.2407 5.2917 3.8498 39 1 6.6666 3.6055 1.2742 40 1 9.5600 3.2021 2.3354 41 1 9.0289 3.8130 0.7502 42 1 10.1040 4.7996 1.7694 43 1 9.2430 5.9762 3.7081 44 1 7.3842 6.8322 6.0513 45 1 8.2719 7.8551 4.8964 46 1 6.5067 8.0187 5.0561 47 1 5.0142 6.3675 4.0897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068231857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:04 Heat of formation + Delta-G solvation = -44.124756 kcal Electronic energy + Delta-G solvation = -28938.923637 eV Core-core repulsion = 25086.438472 eV Total energy + Delta-G solvation = -3852.485165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.39647 -40.57673 -39.62549 -37.80363 -37.03325 -34.55799 -34.40604 -33.54884 -31.98532 -30.62129 -29.08045 -28.08321 -27.55936 -26.80634 -24.73527 -24.01186 -22.87352 -21.41012 -21.09227 -20.49230 -18.94199 -18.50639 -17.98737 -17.58726 -17.12804 -16.57137 -16.28571 -16.12425 -16.00714 -15.43148 -14.95782 -14.89178 -14.74991 -14.62166 -14.34290 -14.26207 -14.00666 -13.94238 -13.83903 -13.51993 -13.33298 -13.26484 -12.97076 -12.86978 -12.81373 -12.71178 -12.54509 -12.38964 -12.35813 -12.15421 -12.03882 -11.88314 -11.62109 -10.95801 -10.89269 -10.71725 -10.46354 -9.83779 -9.54268 -8.89784 -8.34905 -5.85848 0.25018 0.38900 1.28756 1.39763 1.46344 1.53418 1.67286 1.96510 2.25116 2.79704 2.89740 2.97458 3.36512 3.44066 3.87304 3.89479 3.92571 4.00384 4.19719 4.26562 4.37092 4.41921 4.42462 4.48501 4.53815 4.62459 4.67341 4.74241 4.79583 4.86366 4.88637 4.91945 4.93305 4.95359 5.06600 5.09478 5.13854 5.20096 5.34179 5.36369 5.36615 5.51161 5.66116 5.69336 5.72327 5.87855 5.98780 6.15322 6.42795 6.92079 7.06272 7.49911 7.91054 8.60717 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.003593 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.807808 B = 7790.949963 C = 8781.565275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.133 3.867 3 N -0.434 5.434 4 C -0.358 4.358 5 H 0.100 0.900 6 C 0.010 3.990 7 N -0.861 5.861 8 Si 0.973 3.027 9 H -0.287 1.287 10 H -0.272 1.272 11 H -0.261 1.261 12 C 0.451 3.549 13 O -0.640 6.640 14 C -0.129 4.129 15 H 0.134 0.866 16 C -0.108 4.108 17 C 0.100 3.900 18 N -0.559 5.559 19 C 0.157 3.843 20 C -0.204 4.204 21 C -0.064 4.064 22 C -0.113 4.113 23 C -0.152 4.152 24 C -0.056 4.056 25 C -0.108 4.108 26 C -0.166 4.166 27 C 0.524 3.476 28 O -0.539 6.539 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.017 0.983 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.275 0.725 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.093 0.907 43 H 0.149 0.851 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.151 15.391 10.089 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.010 3.990 3 N -0.149 5.149 4 C -0.485 4.485 5 H 0.117 0.883 6 C -0.195 4.195 7 N -0.498 5.498 8 Si 0.798 3.202 9 H -0.213 1.213 10 H -0.197 1.197 11 H -0.186 1.186 12 C 0.240 3.760 13 O -0.530 6.530 14 C -0.153 4.153 15 H 0.151 0.849 16 C -0.146 4.146 17 C -0.020 4.020 18 N -0.282 5.282 19 C 0.063 3.937 20 C -0.224 4.224 21 C -0.065 4.065 22 C -0.169 4.169 23 C -0.171 4.171 24 C -0.057 4.057 25 C -0.164 4.164 26 C -0.186 4.186 27 C 0.313 3.687 28 O -0.416 6.416 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.095 0.905 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.146 0.854 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.111 0.889 43 H 0.167 0.833 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.368 14.586 10.071 19.601 hybrid contribution 0.186 -0.733 -1.277 1.484 sum 8.555 13.853 8.794 18.505 Atomic orbital electron populations 1.21926 0.94720 1.00962 1.00845 1.21168 0.95946 0.82908 0.98946 1.43998 1.53941 1.11713 1.05275 1.19774 1.41981 1.03767 0.83001 0.88264 1.25848 0.95255 0.96822 1.01550 1.70219 1.23743 1.27306 1.28488 0.85298 0.78251 0.79170 0.77528 1.21323 1.19695 1.18573 1.19719 0.84246 0.88779 0.83247 1.90476 1.61657 1.68486 1.32391 1.21934 0.92946 0.96135 1.04319 0.84868 1.22666 0.99284 0.97580 0.95099 1.22607 0.79898 0.97328 1.02173 1.45925 1.06492 1.35787 1.39968 1.18072 0.82602 0.96675 0.96341 1.21511 0.92596 1.03976 1.04355 1.20045 0.93923 0.96218 0.96312 1.20828 0.95055 1.01204 0.99828 1.21177 0.99942 0.98213 0.97737 1.20110 0.91607 0.97013 0.96959 1.20837 1.03905 0.95967 0.95724 1.20890 0.99174 0.99856 0.98685 1.20955 0.91081 0.78475 0.78204 1.90586 1.53662 1.47811 1.49571 0.89562 0.92639 0.96404 0.90545 0.95262 0.91460 0.90128 0.85372 0.86728 0.86806 0.86364 0.90611 0.92738 0.88873 0.83345 0.90029 0.90018 0.90179 0.83042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.94 9.63 71.98 0.69 -5.25 16 2 C 0.13 6.94 5.40 86.38 0.47 7.41 16 3 N -0.43 -23.25 2.62 -635.54 -1.67 -24.92 16 4 C -0.36 -18.83 9.12 84.04 0.77 -18.07 16 5 H 0.10 5.06 5.98 -2.91 -0.02 5.04 16 6 C 0.01 0.49 4.92 84.93 0.42 0.91 16 7 N -0.86 -43.15 8.19 21.66 0.18 -42.97 16 8 Si 0.97 40.76 29.63 68.60 2.03 42.80 16 9 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 10 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 12 C 0.45 23.15 6.60 87.66 0.58 23.73 16 13 O -0.64 -35.71 15.44 -3.06 -0.05 -35.76 16 14 C -0.13 -5.25 2.61 -11.54 -0.03 -5.28 16 15 H 0.13 5.24 6.18 -2.39 -0.01 5.22 16 16 C -0.11 -3.13 6.65 31.66 0.21 -2.92 16 17 C 0.10 2.29 6.44 86.83 0.56 2.85 16 18 N -0.56 -18.73 3.14 -627.69 -1.97 -20.70 16 19 C 0.16 5.04 6.61 38.15 0.25 5.29 16 20 C -0.20 -7.24 8.95 22.39 0.20 -7.04 16 21 C -0.06 -1.78 5.88 -19.88 -0.12 -1.90 16 22 C -0.11 -2.55 10.01 71.24 0.71 -1.84 16 23 C -0.15 -3.29 9.35 22.29 0.21 -3.08 16 24 C -0.06 -1.13 5.88 -19.88 -0.12 -1.24 16 25 C -0.11 -1.25 10.01 71.23 0.71 -0.53 16 26 C -0.17 -3.88 9.06 22.39 0.20 -3.68 16 27 C 0.52 22.55 7.34 87.90 0.65 23.20 16 28 O -0.54 -27.72 14.62 -3.05 -0.04 -27.76 16 29 H 0.09 4.29 5.94 -2.39 -0.01 4.28 16 30 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.08 4.11 6.10 -2.38 -0.01 4.09 16 33 H 0.03 1.56 7.35 -2.39 -0.02 1.54 16 34 H 0.27 12.95 8.31 -92.70 -0.77 12.18 16 35 H 0.08 2.68 7.05 -2.39 -0.02 2.66 16 36 H 0.13 2.78 8.14 -2.38 -0.02 2.76 16 37 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.11 1.96 7.34 -2.39 -0.02 1.94 16 39 H 0.12 5.11 5.21 -2.91 -0.02 5.10 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.05 1.37 8.09 -2.39 -0.02 1.35 16 42 H 0.09 1.54 8.08 -2.39 -0.02 1.52 16 43 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 44 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.08 0.73 8.09 -2.38 -0.02 0.71 16 46 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 47 H 0.15 2.58 6.80 -2.91 -0.02 2.56 16 Total: -1.00 -73.23 374.91 5.83 -67.40 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.99 Total: 29.36 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 6.36 Total: 12.55 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -3.46 Total: -88.59 kcal Atomic # 8 Polarization: -63.43 SS G_CDS: -0.09 Total: -63.52 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.80 kcal Total: -73.23 5.83 -67.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.276 kcal (2) G-P(sol) polarization free energy of solvation -73.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds